Wall clock time and date at job start Wed Apr 1 2020 03:08:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08999 * 109.49991 * 2 1 4 4 C 1.53195 * 109.50227 * 239.90489 * 2 1 3 5 5 N 1.46923 * 108.77794 * 185.41483 * 4 2 1 6 6 C 1.34777 * 120.63351 * 233.62932 * 5 4 2 7 7 O 1.21629 * 119.99205 * 356.28522 * 6 5 4 8 8 C 1.47302 * 120.00452 * 176.28645 * 6 5 4 9 9 C 1.37826 * 126.52895 * 223.16758 * 8 6 5 10 10 N 1.34785 * 108.25302 * 179.97438 * 9 8 6 11 11 H 0.96995 * 125.36532 * 180.02562 * 10 9 8 12 12 C 1.37312 * 109.26729 * 0.02562 * 10 9 8 13 13 C 1.48005 * 125.75970 * 180.02562 * 12 10 9 14 14 N 1.34174 * 126.69554 * 179.97438 * 13 12 10 15 15 N 1.28982 * 107.25406 * 180.02562 * 14 13 12 16 16 N 1.28721 * 108.98664 * 359.97438 * 15 14 13 17 17 H 0.97001 * 125.32695 * 179.97438 * 16 15 14 18 18 N 1.28871 * 109.35752 * 359.73607 * 16 15 14 19 19 C 1.35699 * 108.47304 * 359.72256 * 12 10 9 20 20 C 1.46994 * 118.75445 * 53.60371 * 5 4 2 21 21 C 1.53191 * 108.74220 * 306.41113 * 20 5 4 22 22 C 1.53039 * 109.33874 * 54.62437 * 21 20 5 23 23 H 1.09000 * 109.46298 * 178.60039 * 22 21 20 24 24 N 1.46503 * 109.46135 * 58.63493 * 22 21 20 25 25 C 1.36941 * 119.99649 * 85.00655 * 24 22 21 26 26 H 1.08006 * 119.99926 * 359.97438 * 25 24 22 27 27 C 1.38809 * 120.00032 * 180.02562 * 25 24 22 28 28 N 1.31618 * 119.99966 * 359.97438 * 27 25 24 29 29 Si 1.86800 * 120.00013 * 179.97438 * 27 25 24 30 30 H 1.48501 * 109.46874 * 89.99951 * 29 27 25 31 31 H 1.48501 * 109.46957 * 209.99941 * 29 27 25 32 32 H 1.48495 * 109.47016 * 329.99635 * 29 27 25 33 33 H 1.09000 * 109.47353 * 299.93327 * 1 2 3 34 34 H 1.09001 * 109.47004 * 59.93640 * 1 2 3 35 35 H 1.09004 * 109.47117 * 179.97438 * 1 2 3 36 36 H 1.09005 * 109.58376 * 305.20243 * 4 2 1 37 37 H 1.08996 * 109.58485 * 65.62503 * 4 2 1 38 38 H 1.07994 * 125.87129 * 359.96494 * 9 8 6 39 39 H 1.08006 * 126.46599 * 180.28309 * 19 12 10 40 40 H 1.09009 * 109.63179 * 186.61559 * 20 5 4 41 41 H 1.09004 * 109.57943 * 66.17876 * 20 5 4 42 42 H 1.08992 * 109.49543 * 294.65260 * 21 20 5 43 43 H 1.09003 * 109.49811 * 174.58684 * 21 20 5 44 44 H 0.96998 * 120.00407 * 265.00267 * 24 22 21 45 45 H 0.96995 * 120.00117 * 180.02562 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0414 -0.7241 -1.2494 5 7 3.5047 -0.8294 -1.1693 6 6 4.2813 -0.3862 -2.1777 7 8 3.7708 0.0445 -3.1942 8 6 5.7482 -0.4233 -2.0487 9 6 6.6295 0.5706 -2.4164 10 7 7.8794 0.1514 -2.1361 11 1 8.6907 0.6587 -2.2955 12 6 7.8234 -1.1070 -1.5894 13 6 8.9851 -1.9104 -1.1472 14 7 8.9521 -3.1398 -0.6109 15 7 10.1710 -3.4829 -0.3653 16 7 10.9553 -2.5272 -0.7236 17 1 11.9221 -2.5354 -0.6443 18 7 10.2558 -1.5597 -1.2088 19 6 6.5227 -1.4868 -1.5170 20 6 4.1059 -1.4268 0.0317 21 6 3.5708 -0.6946 1.2663 22 6 2.0408 -0.7228 1.2486 23 1 1.6581 -0.2239 2.1390 24 7 1.5783 -2.1128 1.2313 25 6 1.4467 -2.8052 2.4055 26 1 1.6843 -2.3266 3.3441 27 6 1.0091 -4.1224 2.3891 28 7 0.7201 -4.7057 1.2452 29 14 0.8303 -5.0671 3.9907 30 1 -0.5420 -4.8785 4.5260 31 1 1.0709 -6.5114 3.7429 32 1 1.8198 -4.5623 4.9762 33 1 -0.3634 0.5128 0.8906 34 1 -0.3633 0.5148 -0.8894 35 1 -0.3633 -1.0277 -0.0005 36 1 1.6053 -1.7220 -1.2976 37 1 1.7639 -0.1585 -2.1388 38 1 6.3641 1.5216 -2.8539 39 1 6.1478 -2.4227 -1.1297 40 1 5.1904 -1.3248 -0.0123 41 1 3.8382 -2.4820 0.0879 42 1 3.9159 0.3392 1.2541 43 1 3.9333 -1.1886 2.1678 44 1 1.3653 -2.5427 0.3883 45 1 0.4140 -5.6260 1.2338 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001590294274.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:08:05 Heat of formation + Delta-G solvation = 131.439058 kcal Electronic energy + Delta-G solvation = -30363.967307 eV Core-core repulsion = 26226.884039 eV Total energy + Delta-G solvation = -4137.083269 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.165 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -45.49350 -42.48301 -40.82616 -38.84883 -35.78172 -35.44125 -34.54042 -34.36430 -32.97642 -32.29082 -30.85618 -30.27930 -27.65954 -26.59707 -25.63009 -25.36866 -24.92943 -23.24452 -22.99323 -21.84922 -20.38800 -20.29850 -19.53729 -19.19455 -18.89752 -18.20211 -17.40108 -16.73050 -16.58733 -16.08813 -15.82948 -15.61979 -15.53584 -15.19650 -15.07429 -14.80388 -14.77206 -14.46963 -14.22333 -14.03799 -13.44347 -13.32652 -13.25255 -12.95030 -12.84063 -12.80644 -12.58479 -12.46583 -12.33411 -12.23675 -12.08065 -12.05069 -11.87855 -11.80372 -11.51120 -11.09361 -10.94329 -10.78883 -9.98458 -9.50569 -9.16848 -8.85789 -7.83641 -5.09353 -0.10479 0.35182 0.93837 1.34827 1.52065 1.52422 1.60384 1.75854 1.82553 2.11088 2.34130 2.63824 2.73822 3.30990 3.50172 3.72048 3.96338 3.99412 4.07596 4.15868 4.19190 4.21528 4.29882 4.38748 4.42391 4.49807 4.59639 4.72519 4.76284 4.80646 4.94392 4.98684 5.07283 5.12602 5.20822 5.30730 5.36057 5.37911 5.47227 5.54927 5.57461 5.65195 5.67814 5.77055 6.38295 6.40858 6.58978 7.07464 7.27704 7.45661 8.23154 8.46380 9.39764 Molecular weight = 345.17amu Principal moments of inertia in cm(-1) A = 0.009794 B = 0.003378 C = 0.002655 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2858.300004 B = 8287.716531 C =10544.498250 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.096 4.096 3 H 0.089 0.911 4 C 0.125 3.875 5 N -0.594 5.594 6 C 0.588 3.412 7 O -0.588 6.588 8 C -0.247 4.247 9 C 0.119 3.881 10 N -0.506 5.506 11 H 0.442 0.558 12 C 0.061 3.939 13 C 0.241 3.759 14 N -0.291 5.291 15 N -0.054 5.054 16 N -0.196 5.196 17 H 0.496 0.504 18 N -0.297 5.297 19 C -0.102 4.102 20 C 0.116 3.884 21 C -0.140 4.140 22 C 0.172 3.828 23 H 0.047 0.953 24 N -0.725 5.725 25 C -0.225 4.225 26 H 0.074 0.926 27 C -0.073 4.073 28 N -0.969 5.969 29 Si 0.962 3.038 30 H -0.292 1.292 31 H -0.302 1.302 32 H -0.271 1.271 33 H 0.059 0.941 34 H 0.066 0.934 35 H 0.037 0.963 36 H 0.046 0.954 37 H 0.086 0.914 38 H 0.219 0.781 39 H 0.144 0.856 40 H 0.106 0.894 41 H 0.047 0.953 42 H 0.075 0.925 43 H 0.061 0.939 44 H 0.373 0.627 45 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.948 14.174 -6.110 26.832 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.116 4.116 3 H 0.107 0.893 4 C 0.002 3.998 5 N -0.324 5.324 6 C 0.379 3.621 7 O -0.470 6.470 8 C -0.256 4.256 9 C -0.023 4.023 10 N -0.101 5.101 11 H 0.284 0.716 12 C -0.052 4.052 13 C -0.039 4.039 14 N -0.164 5.164 15 N -0.049 5.049 16 N -0.047 5.047 17 H 0.355 0.645 18 N -0.151 5.151 19 C -0.130 4.130 20 C -0.007 4.007 21 C -0.181 4.181 22 C 0.064 3.936 23 H 0.065 0.935 24 N -0.366 5.366 25 C -0.357 4.357 26 H 0.092 0.908 27 C -0.265 4.265 28 N -0.620 5.620 29 Si 0.793 3.207 30 H -0.220 1.220 31 H -0.229 1.229 32 H -0.196 1.196 33 H 0.078 0.922 34 H 0.085 0.915 35 H 0.057 0.943 36 H 0.065 0.935 37 H 0.105 0.895 38 H 0.235 0.765 39 H 0.162 0.838 40 H 0.124 0.876 41 H 0.065 0.935 42 H 0.094 0.906 43 H 0.080 0.920 44 H 0.207 0.793 45 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 22.185 13.859 -6.173 26.876 hybrid contribution 0.136 -0.966 0.495 1.094 sum 22.321 12.893 -5.678 26.395 Atomic orbital electron populations 1.21603 0.94090 1.01423 1.01810 1.21620 0.96506 0.99399 0.94102 0.89268 1.21497 0.79250 1.00087 0.98980 1.47982 1.06574 1.59496 1.18353 1.17773 0.86376 0.76155 0.81827 1.90719 1.76070 1.50224 1.29970 1.19362 0.92001 0.99061 1.15163 1.22547 0.81218 0.99970 0.98559 1.41421 1.09390 1.12655 1.46651 0.71607 1.16233 0.89099 0.88061 1.11784 1.22550 0.89702 0.91398 1.00237 1.76228 1.11791 1.11740 1.16621 1.78945 0.95373 1.14791 1.15774 1.47723 1.13845 1.06875 1.36236 0.64503 1.74885 1.03533 1.16131 1.20524 1.21080 0.90608 0.99805 1.01459 1.21900 0.98971 0.96431 0.83362 1.22384 0.98388 1.00126 0.97214 1.20453 0.92198 0.85130 0.95855 0.93505 1.42595 1.79048 1.09375 1.05542 1.19569 1.34562 0.93901 0.87696 0.90760 1.25365 1.03735 0.98394 0.99020 1.69805 1.53964 1.12785 1.25454 0.85300 0.77587 0.77573 0.80280 1.21983 1.22941 1.19572 0.92196 0.91535 0.94334 0.93547 0.89524 0.76493 0.83804 0.87575 0.93497 0.90646 0.92042 0.79324 0.94463 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.20 9.05 71.98 0.65 -3.55 16 2 C -0.10 -3.12 2.67 -10.71 -0.03 -3.15 16 3 H 0.09 2.52 8.14 -2.39 -0.02 2.50 16 4 C 0.12 4.38 5.41 86.36 0.47 4.84 16 5 N -0.59 -19.96 2.97 -822.72 -2.45 -22.41 16 6 C 0.59 19.18 7.59 86.63 0.66 19.84 16 7 O -0.59 -22.21 16.52 -4.12 -0.07 -22.27 16 8 C -0.25 -6.26 5.35 -20.08 -0.11 -6.36 16 9 C 0.12 1.95 11.92 84.14 1.00 2.95 16 10 N -0.51 -6.86 6.01 -182.99 -1.10 -7.96 16 11 H 0.44 2.92 8.96 -92.71 -0.83 2.09 16 12 C 0.06 1.26 7.08 40.29 0.29 1.55 16 13 C 0.24 5.10 8.20 137.15 1.13 6.23 16 14 N -0.29 -7.33 12.52 -52.37 -0.66 -7.98 16 15 N -0.05 -1.06 13.47 37.02 0.50 -0.56 16 16 N -0.20 -2.27 7.90 37.02 0.29 -1.98 16 17 H 0.50 0.51 8.96 -347.51 -3.12 -2.61 16 18 N -0.30 -4.57 12.41 -52.32 -0.65 -5.21 16 19 C -0.10 -2.58 8.31 22.59 0.19 -2.39 16 20 C 0.12 3.88 5.47 86.35 0.47 4.36 16 21 C -0.14 -4.65 5.78 30.67 0.18 -4.47 16 22 C 0.17 6.44 2.53 45.02 0.11 6.56 16 23 H 0.05 1.78 8.08 -2.39 -0.02 1.76 16 24 N -0.72 -34.55 3.64 -322.79 -1.18 -35.73 16 25 C -0.23 -12.03 9.93 84.03 0.83 -11.20 16 26 H 0.07 3.82 7.83 -2.91 -0.02 3.80 16 27 C -0.07 -4.13 5.50 84.86 0.47 -3.67 16 28 N -0.97 -59.03 13.06 21.65 0.28 -58.75 16 29 Si 0.96 46.25 29.55 68.60 2.03 48.28 16 30 H -0.29 -13.93 7.11 99.48 0.71 -13.22 16 31 H -0.30 -14.89 7.11 99.48 0.71 -14.19 16 32 H -0.27 -12.30 7.11 99.48 0.71 -11.59 16 33 H 0.06 1.81 8.14 -2.39 -0.02 1.79 16 34 H 0.07 1.81 8.14 -2.39 -0.02 1.79 16 35 H 0.04 1.48 7.54 -2.38 -0.02 1.46 16 36 H 0.05 1.89 6.64 -2.38 -0.02 1.88 16 37 H 0.09 2.99 7.02 -2.39 -0.02 2.97 16 38 H 0.22 2.12 8.06 -2.91 -0.02 2.10 16 39 H 0.14 4.10 7.13 -2.91 -0.02 4.08 16 40 H 0.11 3.13 4.14 -2.38 -0.01 3.12 16 41 H 0.05 1.93 7.74 -2.39 -0.02 1.91 16 42 H 0.07 2.10 8.14 -2.39 -0.02 2.08 16 43 H 0.06 2.17 8.14 -2.39 -0.02 2.15 16 44 H 0.37 19.53 5.93 -92.71 -0.55 18.99 16 45 H 0.25 14.80 8.31 -92.71 -0.77 14.03 16 Total: -1.00 -76.07 371.20 -0.10 -76.17 By element: Atomic # 1 Polarization: 30.29 SS G_CDS: -3.41 Total: 26.88 kcal Atomic # 6 Polarization: 5.22 SS G_CDS: 6.31 Total: 11.53 kcal Atomic # 7 Polarization: -135.63 SS G_CDS: -4.95 Total: -140.58 kcal Atomic # 8 Polarization: -22.21 SS G_CDS: -0.07 Total: -22.27 kcal Atomic # 14 Polarization: 46.25 SS G_CDS: 2.03 Total: 48.28 kcal Total: -76.07 -0.10 -76.17 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001590294274.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 207.611 kcal (2) G-P(sol) polarization free energy of solvation -76.075 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 131.536 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.097 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.172 kcal (6) G-S(sol) free energy of system = (1) + (5) 131.439 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds