Wall clock time and date at job start Wed Apr 1 2020 03:08:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08996 * 109.49752 * 2 1 4 4 C 1.52757 * 109.58668 * 240.04372 * 2 1 3 5 5 N 1.46930 * 109.00360 * 185.53926 * 4 2 1 6 6 C 1.34784 * 120.62869 * 233.58429 * 5 4 2 7 7 O 1.21621 * 119.99885 * 5.76507 * 6 5 4 8 8 C 1.47303 * 120.00166 * 185.76481 * 6 5 4 9 9 C 1.37832 * 126.52919 * 32.26872 * 8 6 5 10 10 N 1.34780 * 108.25544 * 179.74889 * 9 8 6 11 11 H 0.96996 * 125.36314 * 180.25076 * 10 9 8 12 12 C 1.37304 * 109.26838 * 0.37725 * 10 9 8 13 13 C 1.48002 * 125.76359 * 179.88561 * 12 10 9 14 14 N 1.34175 * 126.69766 * 179.71879 * 13 12 10 15 15 N 1.28984 * 107.25294 * 179.97438 * 14 13 12 16 16 N 1.28716 * 108.98637 * 359.97438 * 15 14 13 17 17 H 0.97005 * 125.32095 * 180.02562 * 16 15 14 18 18 N 1.28866 * 109.35715 * 359.75640 * 16 15 14 19 19 C 1.35700 * 108.47477 * 359.62027 * 12 10 9 20 20 C 1.46921 * 118.74349 * 53.31159 * 5 4 2 21 21 C 1.53194 * 108.77266 * 306.64485 * 20 5 4 22 22 C 1.53038 * 109.31219 * 54.63303 * 21 20 5 23 23 H 1.08995 * 109.46400 * 58.65782 * 22 21 20 24 24 N 1.46503 * 109.45533 * 178.61370 * 22 21 20 25 25 C 1.36933 * 120.00207 * 274.99909 * 24 22 21 26 26 H 1.08001 * 119.99846 * 359.97438 * 25 24 22 27 27 C 1.38813 * 120.00271 * 180.02562 * 25 24 22 28 28 N 1.31617 * 119.99621 * 359.97438 * 27 25 24 29 29 Si 1.86802 * 120.00134 * 179.97438 * 27 25 24 30 30 H 1.48495 * 109.47274 * 59.99635 * 29 27 25 31 31 H 1.48497 * 109.47014 * 179.97438 * 29 27 25 32 32 H 1.48498 * 109.46951 * 299.99812 * 29 27 25 33 33 H 1.09007 * 109.46861 * 299.93845 * 1 2 3 34 34 H 1.08995 * 109.47192 * 59.93335 * 1 2 3 35 35 H 1.09002 * 109.47303 * 179.97438 * 1 2 3 36 36 H 1.09002 * 109.51220 * 65.65878 * 4 2 1 37 37 H 1.08998 * 109.43800 * 305.37247 * 4 2 1 38 38 H 1.08001 * 125.86946 * 359.97438 * 9 8 6 39 39 H 1.08002 * 126.47337 * 180.22747 * 19 12 10 40 40 H 1.09012 * 109.58473 * 66.42668 * 20 5 4 41 41 H 1.08997 * 109.59134 * 186.85389 * 20 5 4 42 42 H 1.09008 * 109.49599 * 174.58416 * 21 20 5 43 43 H 1.08996 * 109.49398 * 294.67478 * 21 20 5 44 44 H 0.97002 * 120.00101 * 95.00425 * 24 22 21 45 45 H 0.97004 * 119.99460 * 180.02562 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0421 -0.7186 -1.2469 5 7 3.5052 -0.8284 -1.1689 6 6 4.2819 -0.3847 -2.1771 7 8 3.7818 0.2062 -3.1152 8 6 5.7363 -0.6153 -2.1429 9 6 6.3825 -1.6979 -1.5859 10 7 7.7084 -1.5369 -1.7663 11 1 8.3942 -2.1569 -1.4729 12 6 7.9355 -0.3556 -2.4282 13 6 9.2608 0.1806 -2.8110 14 7 9.5039 1.3285 -3.4617 15 7 10.7826 1.4271 -3.5989 16 7 11.3416 0.3979 -3.0650 17 1 12.2968 0.2314 -3.0340 18 7 10.4344 -0.3739 -2.5731 19 6 6.7392 0.2345 -2.6774 20 6 4.1059 -1.4256 0.0316 21 6 3.5708 -0.6940 1.2666 22 6 2.0408 -0.7228 1.2485 23 1 1.6971 -1.7571 1.2355 24 7 1.5259 -0.0528 2.4453 25 6 1.3945 -0.7493 3.6169 26 1 1.6700 -1.7927 3.6586 27 6 0.9062 -0.1146 4.7508 28 7 0.5700 1.1569 4.6998 29 14 0.7263 -1.0650 6.3488 30 1 2.0535 -1.5809 6.7700 31 1 0.1884 -0.1661 7.4014 32 1 -0.2055 -2.2032 6.1456 33 1 -0.3633 0.5129 0.8906 34 1 -0.3633 0.5148 -0.8893 35 1 -0.3634 -1.0277 -0.0005 36 1 1.7652 -0.1498 -2.1345 37 1 1.6031 -1.7150 -1.2973 38 1 5.9076 -2.5335 -1.0931 39 1 6.5802 1.1737 -3.1865 40 1 3.8385 -2.4809 0.0876 41 1 5.1901 -1.3231 -0.0126 42 1 3.9333 -1.1885 2.1679 43 1 3.9155 0.3399 1.2547 44 1 1.2780 0.8843 2.4078 45 1 0.2291 1.6005 5.4922 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001590294275.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:08:08 Heat of formation + Delta-G solvation = 127.723813 kcal Electronic energy + Delta-G solvation = -29592.056673 eV Core-core repulsion = 25454.812299 eV Total energy + Delta-G solvation = -4137.244374 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.165 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -45.50748 -42.51781 -40.76555 -38.78263 -36.10871 -35.45769 -34.63733 -34.26658 -33.02496 -32.33345 -30.96181 -30.43023 -27.59888 -26.72811 -25.66174 -25.02476 -24.75988 -22.99632 -22.91464 -21.83792 -21.01087 -20.38495 -19.99963 -19.03208 -18.62449 -18.21545 -17.67587 -16.74408 -16.64931 -16.17701 -15.69978 -15.62645 -15.47866 -15.17626 -15.08905 -14.87717 -14.75916 -14.28839 -14.21968 -13.88793 -13.54112 -13.36893 -13.35399 -13.01615 -12.85697 -12.77294 -12.64110 -12.47341 -12.37369 -12.25173 -12.17181 -12.07677 -11.93521 -11.76058 -11.58936 -11.07602 -10.97441 -10.76804 -10.11921 -9.53978 -9.17949 -8.89498 -7.86294 -5.13575 -0.11125 0.33585 0.84597 1.33640 1.51091 1.53531 1.59320 1.75081 1.84014 2.04231 2.45751 2.62160 2.73787 3.28562 3.47011 3.69717 3.88339 3.94823 4.06151 4.09453 4.14357 4.20092 4.27250 4.36880 4.39840 4.48637 4.57306 4.73521 4.76456 4.87824 4.89865 4.92353 4.98749 5.06515 5.09981 5.27744 5.39642 5.46897 5.47879 5.56030 5.58015 5.64229 5.66751 5.74764 6.34812 6.38861 6.55017 7.05784 7.29238 7.41006 8.18746 8.41413 9.37396 Molecular weight = 345.17amu Principal moments of inertia in cm(-1) A = 0.014811 B = 0.002306 C = 0.002114 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1890.078973 B =12140.226524 C =13240.109017 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.102 4.102 3 H 0.045 0.955 4 C 0.129 3.871 5 N -0.602 5.602 6 C 0.587 3.413 7 O -0.591 6.591 8 C -0.248 4.248 9 C 0.102 3.898 10 N -0.505 5.505 11 H 0.443 0.557 12 C 0.057 3.943 13 C 0.241 3.759 14 N -0.292 5.292 15 N -0.053 5.053 16 N -0.196 5.196 17 H 0.496 0.504 18 N -0.298 5.298 19 C -0.085 4.085 20 C 0.104 3.896 21 C -0.144 4.144 22 C 0.179 3.821 23 H 0.055 0.945 24 N -0.734 5.734 25 C -0.226 4.226 26 H 0.081 0.919 27 C -0.081 4.081 28 N -0.974 5.974 29 Si 0.969 3.031 30 H -0.277 1.277 31 H -0.304 1.304 32 H -0.278 1.278 33 H 0.038 0.962 34 H 0.061 0.939 35 H 0.062 0.938 36 H 0.079 0.921 37 H 0.090 0.910 38 H 0.229 0.771 39 H 0.139 0.861 40 H 0.102 0.898 41 H 0.112 0.888 42 H 0.070 0.930 43 H 0.035 0.965 44 H 0.368 0.632 45 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.785 -11.112 -15.652 29.035 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.122 4.122 3 H 0.063 0.937 4 C 0.006 3.994 5 N -0.333 5.333 6 C 0.378 3.622 7 O -0.473 6.473 8 C -0.257 4.257 9 C -0.040 4.040 10 N -0.100 5.100 11 H 0.285 0.715 12 C -0.056 4.056 13 C -0.039 4.039 14 N -0.165 5.165 15 N -0.048 5.048 16 N -0.047 5.047 17 H 0.355 0.645 18 N -0.152 5.152 19 C -0.113 4.113 20 C -0.018 4.018 21 C -0.185 4.185 22 C 0.070 3.930 23 H 0.073 0.927 24 N -0.372 5.372 25 C -0.358 4.358 26 H 0.099 0.901 27 C -0.273 4.273 28 N -0.625 5.625 29 Si 0.798 3.202 30 H -0.203 1.203 31 H -0.231 1.231 32 H -0.204 1.204 33 H 0.057 0.943 34 H 0.080 0.920 35 H 0.081 0.919 36 H 0.097 0.903 37 H 0.108 0.892 38 H 0.245 0.755 39 H 0.157 0.843 40 H 0.120 0.880 41 H 0.130 0.870 42 H 0.088 0.912 43 H 0.054 0.946 44 H 0.200 0.800 45 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 22.123 -10.607 -16.247 29.426 hybrid contribution 0.066 0.141 1.501 1.509 sum 22.189 -10.465 -14.746 28.623 Atomic orbital electron populations 1.21572 0.94067 1.02120 1.00985 1.21540 0.96592 0.98985 0.95070 0.93657 1.21493 0.79064 1.01468 0.97415 1.48023 1.06638 1.60518 1.18102 1.17780 0.86029 0.77036 0.81348 1.90733 1.75839 1.43910 1.36826 1.19411 0.91975 1.00912 1.13436 1.23082 0.81702 1.00155 0.99060 1.41496 1.08323 1.17105 1.43063 0.71547 1.16224 0.87598 0.91851 1.09936 1.22542 0.91571 0.90928 0.98810 1.76187 1.05196 1.17338 1.17757 1.78917 1.01549 1.09801 1.14497 1.47719 1.13013 1.10816 1.33146 0.64473 1.74898 0.97324 1.21464 1.21468 1.20899 0.89563 1.00213 1.00671 1.22318 0.99699 0.97945 0.81844 1.22485 0.98191 0.99846 0.97941 1.20464 0.91866 0.95472 0.85156 0.92717 1.42639 1.76873 1.10826 1.06893 1.19591 1.33354 0.94467 0.88396 0.90073 1.25517 1.03461 0.96915 1.01414 1.69829 1.52234 1.11220 1.29219 0.85275 0.77916 0.77298 0.79666 1.20329 1.23069 1.20431 0.94314 0.91994 0.91941 0.90250 0.89151 0.75464 0.84315 0.88044 0.87049 0.91152 0.94563 0.80031 0.94438 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.21 9.03 71.98 0.65 -3.56 16 2 C -0.10 -3.34 2.44 -10.86 -0.03 -3.36 16 3 H 0.04 1.70 8.14 -2.39 -0.02 1.68 16 4 C 0.13 3.52 5.70 86.22 0.49 4.01 16 5 N -0.60 -15.46 2.98 -823.73 -2.45 -17.91 16 6 C 0.59 17.10 7.61 86.63 0.66 17.76 16 7 O -0.59 -22.23 16.47 -4.10 -0.07 -22.30 16 8 C -0.25 -5.59 5.49 -20.08 -0.11 -5.70 16 9 C 0.10 1.28 9.51 84.14 0.80 2.08 16 10 N -0.50 -5.73 6.01 -182.99 -1.10 -6.83 16 11 H 0.44 2.07 8.96 -92.71 -0.83 1.24 16 12 C 0.06 1.07 7.08 40.29 0.29 1.36 16 13 C 0.24 4.65 8.20 137.16 1.12 5.78 16 14 N -0.29 -6.58 12.52 -52.38 -0.66 -7.23 16 15 N -0.05 -0.90 13.46 37.02 0.50 -0.40 16 16 N -0.20 -1.90 7.90 37.02 0.29 -1.61 16 17 H 0.50 -0.35 8.96 -347.51 -3.12 -3.46 16 18 N -0.30 -4.10 12.41 -52.33 -0.65 -4.75 16 19 C -0.09 -2.05 10.72 22.59 0.24 -1.81 16 20 C 0.10 2.13 5.25 86.36 0.45 2.58 16 21 C -0.14 -4.42 5.66 30.67 0.17 -4.25 16 22 C 0.18 6.44 2.20 45.02 0.10 6.54 16 23 H 0.05 1.91 8.08 -2.39 -0.02 1.90 16 24 N -0.73 -35.25 4.41 -322.81 -1.42 -36.67 16 25 C -0.23 -11.88 9.93 84.03 0.83 -11.04 16 26 H 0.08 3.99 7.83 -2.91 -0.02 3.96 16 27 C -0.08 -4.56 5.50 84.86 0.47 -4.10 16 28 N -0.97 -59.37 13.06 21.65 0.28 -59.08 16 29 Si 0.97 45.07 29.55 68.60 2.03 47.09 16 30 H -0.28 -12.28 7.11 99.48 0.71 -11.58 16 31 H -0.30 -14.61 7.11 99.48 0.71 -13.90 16 32 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 33 H 0.04 1.52 7.36 -2.38 -0.02 1.50 16 34 H 0.06 1.76 8.14 -2.39 -0.02 1.74 16 35 H 0.06 1.86 8.14 -2.39 -0.02 1.84 16 36 H 0.08 2.38 7.00 -2.39 -0.02 2.37 16 37 H 0.09 2.06 8.14 -2.39 -0.02 2.04 16 38 H 0.23 1.03 6.63 -2.91 -0.02 1.01 16 39 H 0.14 3.75 8.06 -2.91 -0.02 3.73 16 40 H 0.10 1.48 8.14 -2.38 -0.02 1.46 16 41 H 0.11 1.74 4.36 -2.39 -0.01 1.73 16 42 H 0.07 2.23 8.14 -2.38 -0.02 2.21 16 43 H 0.04 1.28 8.14 -2.39 -0.02 1.26 16 44 H 0.37 19.83 7.50 -92.71 -0.70 19.13 16 45 H 0.25 14.79 8.31 -92.71 -0.77 14.02 16 Total: -1.00 -80.55 374.47 -0.66 -81.21 By element: Atomic # 1 Polarization: 25.75 SS G_CDS: -3.56 Total: 22.19 kcal Atomic # 6 Polarization: 0.14 SS G_CDS: 6.14 Total: 6.28 kcal Atomic # 7 Polarization: -129.28 SS G_CDS: -5.21 Total: -134.49 kcal Atomic # 8 Polarization: -22.23 SS G_CDS: -0.07 Total: -22.30 kcal Atomic # 14 Polarization: 45.07 SS G_CDS: 2.03 Total: 47.09 kcal Total: -80.55 -0.66 -81.21 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001590294275.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 208.938 kcal (2) G-P(sol) polarization free energy of solvation -80.553 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 128.386 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.662 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.214 kcal (6) G-S(sol) free energy of system = (1) + (5) 127.724 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds