Wall clock time and date at job start Wed Apr 1 2020 03:08:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09001 * 109.49630 * 2 1 4 4 C 1.53188 * 109.49605 * 120.06241 * 2 1 3 5 5 N 1.46931 * 108.77642 * 174.58804 * 4 2 1 6 6 C 1.34776 * 120.63381 * 126.36760 * 5 4 2 7 7 O 1.21625 * 119.99701 * 3.70365 * 6 5 4 8 8 C 1.47308 * 120.00219 * 183.70508 * 6 5 4 9 9 C 1.37829 * 126.52794 * 137.40830 * 8 6 5 10 10 N 1.34779 * 108.24994 * 180.22959 * 9 8 6 11 11 H 0.97003 * 125.36066 * 179.76534 * 10 9 8 12 12 C 1.37305 * 109.26983 * 359.76778 * 10 9 8 13 13 C 1.48010 * 125.75899 * 179.97438 * 12 10 9 14 14 N 1.34173 * 126.69401 * 179.70805 * 13 12 10 15 15 N 1.28983 * 107.25462 * 179.87476 * 14 13 12 16 16 N 1.28728 * 108.98386 * 0.39634 * 15 14 13 17 17 H 0.96996 * 125.32042 * 179.72316 * 16 15 14 18 18 N 1.28870 * 109.35641 * 359.74837 * 16 15 14 19 19 C 1.35694 * 108.47566 * 359.97438 * 12 10 9 20 20 C 1.46927 * 118.73370 * 306.64574 * 5 4 2 21 21 C 1.52755 * 109.00957 * 53.31018 * 20 5 4 22 22 C 1.53032 * 109.49801 * 239.90429 * 2 1 3 23 23 H 1.09004 * 109.46208 * 298.68547 * 22 2 1 24 24 N 1.46498 * 109.46503 * 58.65912 * 22 2 1 25 25 C 1.36934 * 120.00596 * 204.99960 * 24 22 2 26 26 H 1.08005 * 119.99689 * 0.02562 * 25 24 22 27 27 C 1.38811 * 120.00131 * 180.02562 * 25 24 22 28 28 N 1.31612 * 119.99960 * 359.97438 * 27 25 24 29 29 Si 1.86805 * 119.99859 * 180.02562 * 27 25 24 30 30 H 1.48497 * 109.47112 * 59.99632 * 29 27 25 31 31 H 1.48496 * 109.46822 * 179.97438 * 29 27 25 32 32 H 1.48495 * 109.46882 * 299.99866 * 29 27 25 33 33 H 1.09001 * 109.46967 * 299.93440 * 1 2 3 34 34 H 1.09002 * 109.47127 * 59.93903 * 1 2 3 35 35 H 1.08997 * 109.46699 * 179.97438 * 1 2 3 36 36 H 1.09003 * 109.58846 * 54.80022 * 4 2 1 37 37 H 1.08998 * 109.70759 * 294.44286 * 4 2 1 38 38 H 1.07995 * 125.87290 * 359.96306 * 9 8 6 39 39 H 1.08003 * 126.46774 * 179.97438 * 19 12 10 40 40 H 1.09009 * 109.58170 * 173.14064 * 20 5 4 41 41 H 1.08996 * 109.58680 * 293.56652 * 20 5 4 42 42 H 1.09001 * 109.56680 * 185.55165 * 21 20 5 43 43 H 1.09000 * 109.39445 * 65.51211 * 21 20 5 44 44 H 0.97006 * 119.99809 * 25.00224 * 24 22 2 45 45 H 0.97006 * 120.00067 * 180.02562 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0413 -0.7234 1.2498 5 7 3.5046 -0.8287 1.1699 6 6 4.2812 -0.3849 2.1781 7 8 3.7707 0.0466 3.1942 8 6 5.7482 -0.4223 2.0493 9 6 6.6303 0.5673 2.4265 10 7 7.8795 0.1513 2.1386 11 1 8.6910 0.6579 2.2994 12 6 7.8226 -1.1025 1.5818 13 6 8.9834 -1.9014 1.1291 14 7 8.9500 -3.1288 0.5881 15 7 10.1679 -3.4671 0.3316 16 7 10.9527 -2.5136 0.6947 17 1 11.9192 -2.5209 0.6130 18 7 10.2536 -1.5479 1.1839 19 6 6.5224 -1.4854 1.5167 20 6 4.1055 -1.4215 -0.0327 21 6 3.5709 -0.6953 -1.2657 22 6 2.0408 -0.7234 -1.2481 23 1 1.6970 -1.7577 -1.2346 24 7 1.5265 -0.0537 -2.4453 25 6 1.3965 -0.7503 -3.6170 26 1 1.6727 -1.7936 -3.6585 27 6 0.9097 -0.1155 -4.7514 28 7 0.5726 1.1557 -4.7007 29 14 0.7316 -1.0660 -6.3497 30 1 -0.2005 -2.2042 -6.1475 31 1 0.1939 -0.1674 -7.4026 32 1 2.0593 -1.5820 -6.7692 33 1 -0.3633 0.5128 0.8906 34 1 -0.3633 0.5148 -0.8895 35 1 -0.3632 -1.0277 -0.0005 36 1 1.6052 -1.7212 1.2986 37 1 1.7637 -0.1594 2.1403 38 1 6.3656 1.5149 2.8718 39 1 6.1474 -2.4208 1.1281 40 1 5.1896 -1.3158 0.0105 41 1 3.8412 -2.4774 -0.0907 42 1 3.9334 -1.1902 -2.1667 43 1 3.9159 0.3386 -1.2548 44 1 1.2781 0.8833 -2.4079 45 1 0.2321 1.5993 -5.4934 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001590294276.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:08:13 Heat of formation + Delta-G solvation = 152.659583 kcal Electronic energy + Delta-G solvation = -29869.784011 eV Core-core repulsion = 25733.620934 eV Total energy + Delta-G solvation = -4136.163078 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.165 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -44.81432 -41.67695 -39.58270 -37.41930 -34.75207 -34.52037 -33.72622 -32.94687 -31.57547 -31.27450 -29.57253 -29.17469 -26.45055 -25.12428 -24.91235 -24.29735 -23.07110 -22.01822 -21.50849 -21.05704 -19.67699 -19.58267 -18.83862 -18.06417 -17.53009 -17.01572 -16.29834 -15.68117 -15.11077 -14.87661 -14.84299 -14.43769 -14.28822 -14.04227 -13.98099 -13.61764 -13.37834 -13.21951 -12.88739 -12.66927 -12.43538 -12.28613 -12.08354 -11.76525 -11.61125 -11.52730 -11.44679 -11.36595 -11.10251 -10.87349 -10.73140 -10.52846 -10.31458 -10.18739 -9.79129 -9.67515 -9.54400 -9.17268 -8.82299 -8.48254 -8.27409 -6.90760 -5.73192 -3.01184 0.56593 1.09223 1.81121 1.83829 2.51424 2.56531 3.11669 3.31898 3.46056 3.50822 3.51351 3.54138 3.99063 4.61824 4.74174 4.81078 4.84725 5.04523 5.09886 5.23042 5.35032 5.38700 5.50522 5.52118 5.62461 5.74567 5.78143 5.81327 5.90925 5.96185 6.07974 6.17904 6.25131 6.30198 6.41140 6.44858 6.50217 6.52763 6.65121 6.76026 6.90813 6.97311 7.01617 7.15327 7.68257 7.73031 7.76124 8.40634 8.45430 9.56669 10.15148 10.49970 11.49396 Molecular weight = 345.17amu Principal moments of inertia in cm(-1) A = 0.010556 B = 0.002837 C = 0.002357 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2651.851848 B = 9866.458692 C =11875.358518 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.109 4.109 3 H 0.069 0.931 4 C 0.121 3.879 5 N -0.597 5.597 6 C 0.590 3.410 7 O -0.554 6.554 8 C -0.215 4.215 9 C 0.091 3.909 10 N -0.528 5.528 11 H 0.425 0.575 12 C 0.060 3.940 13 C 0.254 3.746 14 N -0.256 5.256 15 N -0.042 5.042 16 N -0.226 5.226 17 H 0.476 0.524 18 N -0.311 5.311 19 C -0.087 4.087 20 C 0.097 3.903 21 C -0.151 4.151 22 C 0.184 3.816 23 H 0.048 0.952 24 N -0.721 5.721 25 C -0.235 4.235 26 H 0.069 0.931 27 C -0.014 4.014 28 N -0.934 5.934 29 Si 0.904 3.096 30 H -0.286 1.286 31 H -0.292 1.292 32 H -0.287 1.287 33 H 0.042 0.958 34 H 0.073 0.927 35 H 0.050 0.950 36 H 0.066 0.934 37 H 0.088 0.912 38 H 0.187 0.813 39 H 0.161 0.839 40 H 0.092 0.908 41 H 0.066 0.934 42 H 0.074 0.926 43 H 0.058 0.942 44 H 0.383 0.617 45 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.931 -3.892 15.596 25.605 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.129 4.129 3 H 0.087 0.913 4 C -0.001 4.001 5 N -0.328 5.328 6 C 0.379 3.621 7 O -0.433 6.433 8 C -0.225 4.225 9 C -0.049 4.049 10 N -0.122 5.122 11 H 0.263 0.737 12 C -0.053 4.053 13 C -0.026 4.026 14 N -0.129 5.129 15 N -0.038 5.038 16 N -0.072 5.072 17 H 0.330 0.670 18 N -0.163 5.163 19 C -0.115 4.115 20 C -0.026 4.026 21 C -0.192 4.192 22 C 0.073 3.927 23 H 0.066 0.934 24 N -0.361 5.361 25 C -0.367 4.367 26 H 0.087 0.913 27 C -0.209 4.209 28 N -0.582 5.582 29 Si 0.736 3.264 30 H -0.213 1.213 31 H -0.218 1.218 32 H -0.214 1.214 33 H 0.061 0.939 34 H 0.092 0.908 35 H 0.069 0.931 36 H 0.084 0.916 37 H 0.106 0.894 38 H 0.204 0.796 39 H 0.178 0.822 40 H 0.109 0.891 41 H 0.084 0.916 42 H 0.093 0.907 43 H 0.077 0.923 44 H 0.217 0.783 45 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 20.080 -4.278 15.706 25.850 hybrid contribution 0.807 0.448 -0.974 1.342 sum 20.887 -3.830 14.732 25.845 Atomic orbital electron populations 1.21659 0.94210 1.01748 1.01756 1.21734 0.96468 1.00033 0.94702 0.91294 1.21702 0.78387 1.00842 0.99196 1.47976 1.06897 1.60054 1.17888 1.17353 0.85139 0.76993 0.82646 1.90758 1.75164 1.48170 1.29202 1.19531 0.93394 0.97380 1.12148 1.22200 0.81763 1.00118 1.00847 1.41494 1.09001 1.14038 1.47661 0.73705 1.16355 0.89777 0.87411 1.11722 1.22520 0.89036 0.91451 0.99580 1.76189 1.10741 1.10767 1.15213 1.78977 0.95524 1.14197 1.15065 1.47628 1.12990 1.08279 1.38335 0.66991 1.74934 1.04411 1.16005 1.20967 1.21154 0.89625 0.99974 1.00756 1.22106 0.99008 0.97104 0.84413 1.22582 1.00116 1.00452 0.96040 1.20210 0.90496 0.95644 0.86328 0.93442 1.42405 1.76517 1.11401 1.05775 1.19184 1.35680 0.94069 0.87728 0.91283 1.24711 1.02232 0.96010 0.97993 1.69648 1.50151 1.09502 1.28913 0.86309 0.77728 0.78724 0.83682 1.21319 1.21834 1.21360 0.93858 0.90827 0.93067 0.91608 0.89379 0.79636 0.82196 0.89050 0.91559 0.90725 0.92344 0.78274 0.93553 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.23 9.02 37.16 0.34 -1.90 16 2 C -0.11 -1.82 2.46 -90.50 -0.22 -2.04 16 3 H 0.07 1.23 8.14 -51.93 -0.42 0.80 16 4 C 0.12 1.80 5.71 -3.71 -0.02 1.78 16 5 N -0.60 -8.69 2.98 -174.34 -0.52 -9.21 16 6 C 0.59 8.81 7.59 -12.57 -0.10 8.71 16 7 O -0.55 -9.78 16.52 5.26 0.09 -9.70 16 8 C -0.21 -2.59 5.34 -104.96 -0.56 -3.15 16 9 C 0.09 0.83 11.92 -16.41 -0.20 0.64 16 10 N -0.53 -4.10 6.01 -9.19 -0.06 -4.15 16 11 H 0.42 2.09 8.96 -40.82 -0.37 1.72 16 12 C 0.06 0.60 7.08 -82.32 -0.58 0.02 16 13 C 0.25 2.59 8.20 -156.26 -1.28 1.30 16 14 N -0.26 -2.88 12.52 32.10 0.40 -2.47 16 15 N -0.04 -0.39 13.47 60.35 0.81 0.43 16 16 N -0.23 -1.38 7.90 60.35 0.48 -0.90 16 17 H 0.48 0.56 8.96 -340.34 -3.05 -2.49 16 18 N -0.31 -2.54 12.41 32.11 0.40 -2.14 16 19 C -0.09 -0.96 8.31 -39.09 -0.32 -1.29 16 20 C 0.10 1.33 5.69 -3.93 -0.02 1.31 16 21 C -0.15 -2.58 5.64 -26.83 -0.15 -2.73 16 22 C 0.18 3.50 2.19 -67.89 -0.15 3.35 16 23 H 0.05 0.93 8.08 -51.93 -0.42 0.51 16 24 N -0.72 -17.38 4.41 -53.39 -0.24 -17.61 16 25 C -0.24 -6.34 9.93 -15.06 -0.15 -6.49 16 26 H 0.07 1.81 7.83 -52.48 -0.41 1.40 16 27 C -0.01 -0.38 5.50 -17.43 -0.10 -0.48 16 28 N -0.93 -27.84 13.06 55.49 0.72 -27.12 16 29 Si 0.90 22.20 29.55 -169.99 -5.02 17.17 16 30 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 31 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 32 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 33 H 0.04 0.62 8.14 -51.93 -0.42 0.19 16 34 H 0.07 1.41 7.36 -51.93 -0.38 1.03 16 35 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 36 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 37 H 0.09 1.34 7.02 -51.93 -0.36 0.98 16 38 H 0.19 1.28 8.06 -52.49 -0.42 0.85 16 39 H 0.16 1.69 7.13 -52.48 -0.37 1.31 16 40 H 0.09 1.14 4.15 -51.92 -0.22 0.93 16 41 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 42 H 0.07 1.36 8.14 -51.93 -0.42 0.94 16 43 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 44 H 0.38 9.98 7.50 -40.82 -0.31 9.67 16 45 H 0.25 7.42 8.31 -40.82 -0.34 7.08 16 LS Contribution 375.11 15.07 5.65 5.65 Total: -1.00 -34.88 375.11 -9.21 -44.09 By element: Atomic # 1 Polarization: 15.34 SS G_CDS: -8.41 Total: 6.93 kcal Atomic # 6 Polarization: 2.55 SS G_CDS: -3.52 Total: -0.97 kcal Atomic # 7 Polarization: -65.19 SS G_CDS: 2.00 Total: -63.18 kcal Atomic # 8 Polarization: -9.78 SS G_CDS: 0.09 Total: -9.70 kcal Atomic # 14 Polarization: 22.20 SS G_CDS: -5.02 Total: 17.17 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -34.88 -9.21 -44.09 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001590294276.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 196.749 kcal (2) G-P(sol) polarization free energy of solvation -34.885 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 161.865 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.205 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.090 kcal (6) G-S(sol) free energy of system = (1) + (5) 152.660 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds