Wall clock time and date at job start Wed Apr 1 2020 03:08:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09001 * 109.49630 * 2 1 4 4 C 1.53188 * 109.49605 * 120.06241 * 2 1 3 5 5 N 1.46931 * 108.77642 * 174.58804 * 4 2 1 6 6 C 1.34776 * 120.63381 * 126.36760 * 5 4 2 7 7 O 1.21625 * 119.99701 * 3.70365 * 6 5 4 8 8 C 1.47308 * 120.00219 * 183.70508 * 6 5 4 9 9 C 1.37829 * 126.52794 * 137.40830 * 8 6 5 10 10 N 1.34779 * 108.24994 * 180.22959 * 9 8 6 11 11 H 0.97003 * 125.36066 * 179.76534 * 10 9 8 12 12 C 1.37305 * 109.26983 * 359.76778 * 10 9 8 13 13 C 1.48010 * 125.75899 * 179.97438 * 12 10 9 14 14 N 1.34173 * 126.69401 * 179.70805 * 13 12 10 15 15 N 1.28983 * 107.25462 * 179.87476 * 14 13 12 16 16 N 1.28728 * 108.98386 * 0.39634 * 15 14 13 17 17 H 0.96996 * 125.32042 * 179.72316 * 16 15 14 18 18 N 1.28870 * 109.35641 * 359.74837 * 16 15 14 19 19 C 1.35694 * 108.47566 * 359.97438 * 12 10 9 20 20 C 1.46927 * 118.73370 * 306.64574 * 5 4 2 21 21 C 1.52755 * 109.00957 * 53.31018 * 20 5 4 22 22 C 1.53032 * 109.49801 * 239.90429 * 2 1 3 23 23 H 1.09004 * 109.46208 * 298.68547 * 22 2 1 24 24 N 1.46498 * 109.46503 * 58.65912 * 22 2 1 25 25 C 1.36934 * 120.00596 * 204.99960 * 24 22 2 26 26 H 1.08005 * 119.99689 * 0.02562 * 25 24 22 27 27 C 1.38811 * 120.00131 * 180.02562 * 25 24 22 28 28 N 1.31612 * 119.99960 * 359.97438 * 27 25 24 29 29 Si 1.86805 * 119.99859 * 180.02562 * 27 25 24 30 30 H 1.48497 * 109.47112 * 59.99632 * 29 27 25 31 31 H 1.48496 * 109.46822 * 179.97438 * 29 27 25 32 32 H 1.48495 * 109.46882 * 299.99866 * 29 27 25 33 33 H 1.09001 * 109.46967 * 299.93440 * 1 2 3 34 34 H 1.09002 * 109.47127 * 59.93903 * 1 2 3 35 35 H 1.08997 * 109.46699 * 179.97438 * 1 2 3 36 36 H 1.09003 * 109.58846 * 54.80022 * 4 2 1 37 37 H 1.08998 * 109.70759 * 294.44286 * 4 2 1 38 38 H 1.07995 * 125.87290 * 359.96306 * 9 8 6 39 39 H 1.08003 * 126.46774 * 179.97438 * 19 12 10 40 40 H 1.09009 * 109.58170 * 173.14064 * 20 5 4 41 41 H 1.08996 * 109.58680 * 293.56652 * 20 5 4 42 42 H 1.09001 * 109.56680 * 185.55165 * 21 20 5 43 43 H 1.09000 * 109.39445 * 65.51211 * 21 20 5 44 44 H 0.97006 * 119.99809 * 25.00224 * 24 22 2 45 45 H 0.97006 * 120.00067 * 180.02562 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0413 -0.7234 1.2498 5 7 3.5046 -0.8287 1.1699 6 6 4.2812 -0.3849 2.1781 7 8 3.7707 0.0466 3.1942 8 6 5.7482 -0.4223 2.0493 9 6 6.6303 0.5673 2.4265 10 7 7.8795 0.1513 2.1386 11 1 8.6910 0.6579 2.2994 12 6 7.8226 -1.1025 1.5818 13 6 8.9834 -1.9014 1.1291 14 7 8.9500 -3.1288 0.5881 15 7 10.1679 -3.4671 0.3316 16 7 10.9527 -2.5136 0.6947 17 1 11.9192 -2.5209 0.6130 18 7 10.2536 -1.5479 1.1839 19 6 6.5224 -1.4854 1.5167 20 6 4.1055 -1.4215 -0.0327 21 6 3.5709 -0.6953 -1.2657 22 6 2.0408 -0.7234 -1.2481 23 1 1.6970 -1.7577 -1.2346 24 7 1.5265 -0.0537 -2.4453 25 6 1.3965 -0.7503 -3.6170 26 1 1.6727 -1.7936 -3.6585 27 6 0.9097 -0.1155 -4.7514 28 7 0.5726 1.1557 -4.7007 29 14 0.7316 -1.0660 -6.3497 30 1 -0.2005 -2.2042 -6.1475 31 1 0.1939 -0.1674 -7.4026 32 1 2.0593 -1.5820 -6.7692 33 1 -0.3633 0.5128 0.8906 34 1 -0.3633 0.5148 -0.8895 35 1 -0.3632 -1.0277 -0.0005 36 1 1.6052 -1.7212 1.2986 37 1 1.7637 -0.1594 2.1403 38 1 6.3656 1.5149 2.8718 39 1 6.1474 -2.4208 1.1281 40 1 5.1896 -1.3158 0.0105 41 1 3.8412 -2.4774 -0.0907 42 1 3.9334 -1.1902 -2.1667 43 1 3.9159 0.3386 -1.2548 44 1 1.2781 0.8833 -2.4079 45 1 0.2321 1.5993 -5.4934 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001590294276.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:08:12 Heat of formation + Delta-G solvation = 127.341553 kcal Electronic energy + Delta-G solvation = -29870.881884 eV Core-core repulsion = 25733.620934 eV Total energy + Delta-G solvation = -4137.260950 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.165 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -45.48182 -42.47824 -40.77299 -38.79185 -36.10227 -35.42624 -34.54492 -34.35754 -33.07182 -32.30011 -30.97779 -30.25648 -27.68620 -26.71991 -25.62354 -25.17039 -24.52694 -23.14930 -22.91187 -21.83426 -20.99290 -20.34686 -19.72232 -19.12324 -18.87762 -18.19095 -17.46540 -16.79129 -16.62062 -16.16117 -15.63701 -15.61895 -15.51975 -15.18820 -15.06550 -14.89309 -14.79747 -14.55680 -14.11389 -13.88809 -13.47815 -13.33742 -13.28462 -13.04038 -12.84154 -12.78513 -12.65439 -12.45086 -12.38896 -12.23247 -12.17199 -12.04686 -11.96845 -11.76393 -11.60698 -11.09096 -10.98057 -10.79551 -9.98970 -9.57853 -9.16976 -8.90969 -7.87419 -5.14308 -0.08976 0.36406 0.93696 1.35315 1.50528 1.52678 1.58339 1.75994 1.82335 2.06916 2.36868 2.61232 2.74576 3.31095 3.45693 3.70714 3.86831 3.96346 4.07819 4.12723 4.19359 4.20825 4.30004 4.40029 4.40680 4.46505 4.56804 4.71857 4.76260 4.87049 4.90667 4.91513 4.99353 5.06602 5.10611 5.26505 5.38638 5.47051 5.49277 5.55963 5.57566 5.61579 5.68103 5.75468 6.34219 6.38080 6.53595 7.08045 7.26214 7.40770 8.17826 8.41122 9.36042 Molecular weight = 345.17amu Principal moments of inertia in cm(-1) A = 0.010556 B = 0.002837 C = 0.002357 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2651.851848 B = 9866.458692 C =11875.358518 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.099 4.099 3 H 0.054 0.946 4 C 0.128 3.872 5 N -0.599 5.599 6 C 0.591 3.409 7 O -0.585 6.585 8 C -0.247 4.247 9 C 0.110 3.890 10 N -0.509 5.509 11 H 0.440 0.560 12 C 0.058 3.942 13 C 0.241 3.759 14 N -0.286 5.286 15 N -0.052 5.052 16 N -0.197 5.197 17 H 0.495 0.505 18 N -0.302 5.302 19 C -0.096 4.096 20 C 0.108 3.892 21 C -0.140 4.140 22 C 0.179 3.821 23 H 0.047 0.953 24 N -0.731 5.731 25 C -0.229 4.229 26 H 0.076 0.924 27 C -0.077 4.077 28 N -0.971 5.971 29 Si 0.967 3.033 30 H -0.279 1.279 31 H -0.300 1.300 32 H -0.279 1.279 33 H 0.065 0.935 34 H 0.040 0.960 35 H 0.057 0.943 36 H 0.081 0.919 37 H 0.087 0.913 38 H 0.211 0.789 39 H 0.160 0.840 40 H 0.108 0.892 41 H 0.082 0.918 42 H 0.062 0.938 43 H 0.043 0.957 44 H 0.371 0.629 45 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.045 -4.799 16.614 28.019 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.119 4.119 3 H 0.073 0.927 4 C 0.005 3.995 5 N -0.330 5.330 6 C 0.381 3.619 7 O -0.467 6.467 8 C -0.256 4.256 9 C -0.032 4.032 10 N -0.105 5.105 11 H 0.282 0.718 12 C -0.055 4.055 13 C -0.039 4.039 14 N -0.158 5.158 15 N -0.047 5.047 16 N -0.048 5.048 17 H 0.354 0.646 18 N -0.155 5.155 19 C -0.124 4.124 20 C -0.015 4.015 21 C -0.181 4.181 22 C 0.071 3.929 23 H 0.065 0.935 24 N -0.370 5.370 25 C -0.361 4.361 26 H 0.094 0.906 27 C -0.269 4.269 28 N -0.623 5.623 29 Si 0.796 3.204 30 H -0.205 1.205 31 H -0.227 1.227 32 H -0.206 1.206 33 H 0.084 0.916 34 H 0.059 0.941 35 H 0.076 0.924 36 H 0.099 0.901 37 H 0.105 0.895 38 H 0.227 0.773 39 H 0.178 0.822 40 H 0.126 0.874 41 H 0.100 0.900 42 H 0.081 0.919 43 H 0.062 0.938 44 H 0.202 0.798 45 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 22.267 -5.238 16.745 28.349 hybrid contribution 0.289 0.731 -1.203 1.437 sum 22.556 -4.507 15.542 27.760 Atomic orbital electron populations 1.21577 0.93970 1.01984 1.01222 1.21594 0.96613 0.99146 0.94506 0.92719 1.21600 0.78907 1.01297 0.97725 1.48019 1.06759 1.60111 1.18099 1.17722 0.86264 0.75911 0.81971 1.90733 1.76031 1.49622 1.30331 1.19387 0.92098 0.99162 1.14969 1.22528 0.81559 1.00134 0.98990 1.41463 1.09332 1.13323 1.46334 0.71844 1.16340 0.89510 0.88008 1.11610 1.22551 0.89616 0.91443 1.00257 1.76166 1.11752 1.11576 1.16344 1.78926 0.95411 1.14801 1.15605 1.47714 1.13852 1.07059 1.36216 0.64568 1.74904 1.03822 1.16180 1.20633 1.21150 0.90083 0.99937 1.01202 1.22054 0.99811 0.97196 0.82393 1.22376 0.98342 0.99984 0.97397 1.20432 0.91651 0.95285 0.85549 0.93523 1.42578 1.76854 1.10862 1.06683 1.19562 1.33607 0.94377 0.88556 0.90595 1.25462 1.03307 0.96916 1.01198 1.69811 1.52123 1.11084 1.29238 0.85306 0.77852 0.77388 0.79811 1.20532 1.22685 1.20553 0.91567 0.94121 0.92399 0.90097 0.89455 0.77264 0.82220 0.87379 0.89970 0.91929 0.93773 0.79776 0.94323 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.24 9.02 71.98 0.65 -3.59 16 2 C -0.10 -3.27 2.46 -10.72 -0.03 -3.29 16 3 H 0.05 1.97 8.14 -2.39 -0.02 1.95 16 4 C 0.13 3.64 5.71 86.36 0.49 4.14 16 5 N -0.60 -16.78 2.98 -823.73 -2.45 -19.23 16 6 C 0.59 16.99 7.59 86.63 0.66 17.65 16 7 O -0.59 -20.21 16.52 -4.11 -0.07 -20.28 16 8 C -0.25 -5.56 5.34 -20.08 -0.11 -5.67 16 9 C 0.11 1.76 11.92 84.14 1.00 2.76 16 10 N -0.51 -6.60 6.01 -183.00 -1.10 -7.70 16 11 H 0.44 2.98 8.96 -92.71 -0.83 2.15 16 12 C 0.06 1.05 7.08 40.29 0.29 1.34 16 13 C 0.24 4.48 8.20 137.16 1.13 5.60 16 14 N -0.29 -6.06 12.52 -52.37 -0.66 -6.71 16 15 N -0.05 -0.87 13.47 37.02 0.50 -0.38 16 16 N -0.20 -1.94 7.90 37.02 0.29 -1.65 16 17 H 0.50 -0.14 8.96 -347.52 -3.11 -3.26 16 18 N -0.30 -4.21 12.41 -52.32 -0.65 -4.86 16 19 C -0.10 -1.98 8.31 22.59 0.19 -1.80 16 20 C 0.11 2.84 5.69 86.22 0.49 3.33 16 21 C -0.14 -4.75 5.64 30.53 0.17 -4.58 16 22 C 0.18 6.83 2.19 45.02 0.10 6.93 16 23 H 0.05 1.80 8.08 -2.39 -0.02 1.78 16 24 N -0.73 -35.90 4.41 -322.82 -1.42 -37.33 16 25 C -0.23 -12.41 9.93 84.03 0.83 -11.58 16 26 H 0.08 3.94 7.83 -2.91 -0.02 3.92 16 27 C -0.08 -4.38 5.50 84.86 0.47 -3.91 16 28 N -0.97 -59.39 13.06 21.65 0.28 -59.11 16 29 Si 0.97 46.05 29.55 68.60 2.03 48.08 16 30 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 31 H -0.30 -14.58 7.11 99.48 0.71 -13.87 16 32 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 33 H 0.07 1.83 8.14 -2.39 -0.02 1.81 16 34 H 0.04 1.59 7.36 -2.39 -0.02 1.57 16 35 H 0.06 1.79 8.14 -2.39 -0.02 1.77 16 36 H 0.08 2.09 8.14 -2.39 -0.02 2.07 16 37 H 0.09 2.57 7.02 -2.39 -0.02 2.55 16 38 H 0.21 2.27 8.06 -2.91 -0.02 2.25 16 39 H 0.16 3.19 7.13 -2.91 -0.02 3.17 16 40 H 0.11 2.55 4.15 -2.38 -0.01 2.54 16 41 H 0.08 1.94 8.14 -2.39 -0.02 1.92 16 42 H 0.06 2.27 8.14 -2.39 -0.02 2.25 16 43 H 0.04 1.61 8.14 -2.39 -0.02 1.59 16 44 H 0.37 19.96 7.50 -92.70 -0.70 19.27 16 45 H 0.25 14.85 8.31 -92.70 -0.77 14.08 16 Total: -1.00 -76.06 375.11 -0.48 -76.54 By element: Atomic # 1 Polarization: 28.85 SS G_CDS: -3.56 Total: 25.30 kcal Atomic # 6 Polarization: 0.99 SS G_CDS: 6.33 Total: 7.32 kcal Atomic # 7 Polarization: -131.75 SS G_CDS: -5.21 Total: -136.96 kcal Atomic # 8 Polarization: -20.21 SS G_CDS: -0.07 Total: -20.28 kcal Atomic # 14 Polarization: 46.05 SS G_CDS: 2.03 Total: 48.08 kcal Total: -76.06 -0.48 -76.54 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001590294276.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 203.883 kcal (2) G-P(sol) polarization free energy of solvation -76.063 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 127.820 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.478 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.542 kcal (6) G-S(sol) free energy of system = (1) + (5) 127.342 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds