Wall clock time and date at job start Wed Apr 1 2020 03:14:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09009 * 109.74701 * 2 1 4 4 C 1.53812 * 109.76309 * 239.37788 * 2 1 3 5 5 N 1.46967 * 108.57444 * 289.94705 * 4 2 1 6 6 C 1.34775 * 120.59716 * 124.62570 * 5 4 2 7 7 O 1.21687 * 120.00035 * 186.37661 * 6 5 4 8 8 C 1.46729 * 119.99655 * 6.37214 * 6 5 4 9 9 C 1.36670 * 126.02217 * 227.13035 * 8 6 5 10 10 C 1.40803 * 107.04933 * 180.02562 * 9 8 6 11 11 C 1.48512 * 126.27885 * 179.97438 * 10 9 8 12 12 N 1.34034 * 126.67624 * 359.68646 * 11 10 9 13 13 N 1.28975 * 107.27046 * 179.83608 * 12 11 10 14 14 N 1.28729 * 108.94322 * 0.42848 * 13 12 11 15 15 H 0.97000 * 125.34627 * 179.72834 * 14 13 12 16 16 N 1.28875 * 109.31252 * 359.72607 * 14 13 12 17 17 C 1.36560 * 107.43676 * 359.97438 * 10 9 8 18 18 N 1.34846 * 108.61173 * 359.73500 * 17 10 9 19 19 H 0.96992 * 125.52593 * 180.26033 * 18 17 10 20 20 C 1.46969 * 118.81162 * 304.64265 * 5 4 2 21 21 C 1.53369 * 108.63304 * 55.23086 * 20 5 4 22 22 H 1.08997 * 109.75637 * 70.40290 * 21 20 5 23 23 C 1.53002 * 109.61050 * 190.83337 * 21 20 5 24 24 N 1.46964 * 109.61344 * 120.42646 * 2 1 3 25 25 C 1.36935 * 120.59540 * 244.54712 * 24 2 1 26 26 H 1.08002 * 119.99921 * 209.81969 * 25 24 2 27 27 C 1.38817 * 120.00189 * 29.81855 * 25 24 2 28 28 N 1.31617 * 120.00077 * 18.67631 * 27 25 24 29 29 Si 1.86799 * 119.99909 * 198.68133 * 27 25 24 30 30 H 1.48497 * 109.46829 * 269.99517 * 29 27 25 31 31 H 1.48497 * 109.47196 * 29.99624 * 29 27 25 32 32 H 1.48500 * 109.46811 * 149.99856 * 29 27 25 33 33 H 1.09000 * 109.47689 * 299.56923 * 1 2 3 34 34 H 1.08997 * 109.47679 * 59.57328 * 1 2 3 35 35 H 1.09003 * 109.46650 * 179.57175 * 1 2 3 36 36 H 1.08999 * 109.74374 * 170.15539 * 4 2 1 37 37 H 1.08996 * 109.67262 * 49.68921 * 4 2 1 38 38 H 1.07994 * 126.47366 * 359.97438 * 9 8 6 39 39 H 1.08001 * 125.69186 * 180.02562 * 17 10 9 40 40 H 1.09006 * 109.61144 * 295.48448 * 20 5 4 41 41 H 1.08991 * 109.75155 * 175.05702 * 20 5 4 42 42 H 1.08994 * 109.47211 * 179.14553 * 23 21 20 43 43 H 1.09003 * 109.46854 * 299.14592 * 23 21 20 44 44 H 1.09004 * 109.46979 * 59.13952 * 23 21 20 45 45 H 0.96994 * 120.00353 * 179.97438 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8983 1.0260 0.0000 4 6 2.0500 -0.7373 -1.2457 5 7 1.7611 -2.1705 -1.0960 6 6 1.0604 -2.8311 -2.0389 7 8 0.7272 -3.9864 -1.8516 8 6 0.6992 -2.1572 -3.2912 9 6 -0.5352 -2.1591 -3.8780 10 6 -0.4335 -1.3943 -5.0558 11 6 -1.5275 -1.1186 -6.0217 12 7 -2.7932 -1.5526 -5.9430 13 7 -3.4206 -1.0916 -6.9713 14 7 -2.6018 -0.4016 -7.6858 15 1 -2.8236 0.0495 -8.5153 16 7 -1.4410 -0.4042 -7.1259 17 6 0.8555 -0.9527 -5.1471 18 7 1.5424 -1.4064 -4.0791 19 1 2.4794 -1.2343 -3.8971 20 6 2.2495 -2.8704 0.1004 21 6 1.7343 -2.1343 1.3433 22 1 0.6588 -2.2825 1.4399 23 6 2.4407 -2.6731 2.5890 24 7 2.0233 -0.7011 1.1937 25 6 2.7344 -0.0297 2.1522 26 1 3.4777 -0.5509 2.7373 27 6 2.5000 1.3208 2.3719 28 7 1.3817 1.8718 1.9497 29 14 3.7717 2.3560 3.2665 30 1 3.4972 2.3255 4.7255 31 1 5.1274 1.8087 3.0063 32 1 3.7014 3.7569 2.7787 33 1 -0.3634 0.5071 0.8938 34 1 -0.3634 0.5204 -0.8861 35 1 -0.3633 -1.0277 -0.0077 36 1 3.1258 -0.5888 -1.3391 37 1 1.5492 -0.3541 -2.1347 38 1 -1.4209 -2.6543 -3.5084 39 1 1.2564 -0.3384 -5.9397 40 1 3.3396 -2.8738 0.1028 41 1 1.8806 -3.8960 0.1036 42 1 2.0840 -2.1381 3.4690 43 1 2.2249 -3.7361 2.6977 44 1 3.5164 -2.5293 2.4874 45 1 1.2177 2.8153 2.1035 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001590296020.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:14:17 Heat of formation + Delta-G solvation = 174.149508 kcal Electronic energy + Delta-G solvation = -30749.107896 eV Core-core repulsion = 26613.876692 eV Total energy + Delta-G solvation = -4135.231204 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.165 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -44.44992 -41.57232 -39.32418 -37.28574 -34.48504 -34.13943 -33.57675 -32.81733 -31.23623 -30.95523 -29.57276 -27.95379 -26.46463 -25.65691 -24.75203 -24.17354 -23.73979 -21.89408 -21.06348 -20.41461 -20.04415 -19.17690 -18.83394 -17.74096 -17.15544 -16.36115 -15.86984 -15.46787 -15.21580 -14.90211 -14.73123 -14.14989 -14.02495 -13.95641 -13.73221 -13.54816 -13.28866 -12.99205 -12.71085 -12.53511 -12.16812 -12.11324 -11.80837 -11.51667 -11.43785 -11.19898 -11.17350 -11.13476 -11.05002 -10.80512 -10.69302 -10.60329 -10.24149 -10.15778 -9.93482 -9.73180 -9.49789 -8.92098 -8.57808 -8.36487 -8.18292 -6.69552 -5.87773 -3.31639 0.96470 1.49799 1.78128 2.17832 2.74917 3.07091 3.15662 3.30625 3.39208 3.40173 3.54742 3.86802 4.19626 4.40903 4.75602 4.93190 5.11442 5.25611 5.28598 5.33164 5.45329 5.61957 5.65868 5.76624 5.86545 5.92874 6.03092 6.03962 6.12323 6.19902 6.30018 6.32258 6.42504 6.51659 6.55298 6.66636 6.73582 6.83413 6.88412 6.98147 7.08097 7.19581 7.41498 7.60783 7.73084 7.81898 8.14538 8.35467 8.39306 9.11473 9.73521 10.31728 11.19333 Molecular weight = 345.17amu Principal moments of inertia in cm(-1) A = 0.015584 B = 0.002908 C = 0.002640 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1796.320401 B = 9624.869428 C =10602.558526 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.184 3.816 3 H 0.103 0.897 4 C 0.080 3.920 5 N -0.588 5.588 6 C 0.581 3.419 7 O -0.539 6.539 8 C -0.024 4.024 9 C -0.081 4.081 10 C -0.118 4.118 11 C 0.268 3.732 12 N -0.269 5.269 13 N -0.055 5.055 14 N -0.234 5.234 15 H 0.472 0.528 16 N -0.310 5.310 17 C 0.071 3.929 18 N -0.526 5.526 19 H 0.425 0.575 20 C 0.101 3.899 21 C 0.154 3.846 22 H 0.034 0.966 23 C -0.135 4.135 24 N -0.580 5.580 25 C -0.255 4.255 26 H 0.071 0.929 27 C 0.007 3.993 28 N -0.894 5.894 29 Si 0.898 3.102 30 H -0.287 1.287 31 H -0.280 1.280 32 H -0.290 1.290 33 H 0.079 0.921 34 H 0.027 0.973 35 H 0.026 0.974 36 H 0.062 0.938 37 H 0.072 0.928 38 H 0.154 0.846 39 H 0.181 0.819 40 H 0.064 0.936 41 H 0.083 0.917 42 H 0.065 0.935 43 H 0.041 0.959 44 H 0.055 0.945 45 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.606 -2.894 -17.034 17.289 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.076 3.924 3 H 0.120 0.880 4 C -0.045 4.045 5 N -0.319 5.319 6 C 0.368 3.632 7 O -0.416 6.416 8 C -0.136 4.136 9 C -0.108 4.108 10 C -0.129 4.129 11 C -0.012 4.012 12 N -0.143 5.143 13 N -0.050 5.050 14 N -0.080 5.080 15 H 0.326 0.674 16 N -0.162 5.162 17 C -0.071 4.071 18 N -0.122 5.122 19 H 0.264 0.736 20 C -0.023 4.023 21 C 0.046 3.954 22 H 0.051 0.949 23 C -0.192 4.192 24 N -0.303 5.303 25 C -0.385 4.385 26 H 0.089 0.911 27 C -0.193 4.193 28 N -0.538 5.538 29 Si 0.727 3.273 30 H -0.214 1.214 31 H -0.206 1.206 32 H -0.217 1.217 33 H 0.097 0.903 34 H 0.046 0.954 35 H 0.045 0.955 36 H 0.081 0.919 37 H 0.090 0.910 38 H 0.172 0.828 39 H 0.198 0.802 40 H 0.083 0.917 41 H 0.101 0.899 42 H 0.084 0.916 43 H 0.060 0.940 44 H 0.074 0.926 45 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -1.273 -3.387 -17.004 17.384 hybrid contribution 1.215 1.314 0.066 1.791 sum -0.057 -2.074 -16.938 17.064 Atomic orbital electron populations 1.22013 0.97802 0.98983 1.01385 1.20716 0.92512 0.96456 0.82711 0.87974 1.22861 1.00129 0.79736 1.01751 1.47998 1.52770 1.10669 1.20497 1.17136 0.78519 0.85454 0.82120 1.90808 1.54185 1.16781 1.79837 1.20068 0.91919 1.04770 0.96868 1.20874 0.96399 1.00034 0.93473 1.16277 0.89882 1.09957 0.96734 1.22824 0.92086 0.94463 0.91815 1.76124 1.04243 1.20261 1.13643 1.78903 1.19870 1.06244 0.99989 1.47651 1.03860 1.34861 1.21598 0.67405 1.74895 1.06887 1.23602 1.10813 1.21775 0.91352 1.01296 0.92675 1.41960 1.12471 1.38993 1.18745 0.73572 1.22315 0.98386 0.96570 0.84990 1.20798 0.96730 0.86217 0.91613 0.94883 1.21751 1.00654 0.98382 0.98462 1.44173 1.63100 1.03170 1.19844 1.19132 1.12939 0.92098 1.14287 0.91143 1.25074 0.96168 0.98772 0.99247 1.70015 1.22063 1.11949 1.49746 0.86384 0.81577 0.79781 0.79510 1.21442 1.20568 1.21657 0.90255 0.95370 0.95508 0.91945 0.91005 0.82792 0.80182 0.91746 0.89875 0.91558 0.93972 0.92635 0.93631 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.04 8.96 37.15 0.33 -2.71 16 2 C 0.18 3.85 2.36 -67.26 -0.16 3.69 16 3 H 0.10 2.42 6.16 -51.92 -0.32 2.10 16 4 C 0.08 1.32 5.40 -3.36 -0.02 1.30 16 5 N -0.59 -10.01 2.59 -173.74 -0.45 -10.46 16 6 C 0.58 10.00 7.56 -12.83 -0.10 9.90 16 7 O -0.54 -10.85 16.52 5.20 0.09 -10.76 16 8 C -0.02 -0.35 5.57 -82.38 -0.46 -0.80 16 9 C -0.08 -1.18 10.78 -39.18 -0.42 -1.60 16 10 C -0.12 -1.50 6.10 -105.30 -0.64 -2.14 16 11 C 0.27 3.45 8.18 -156.30 -1.28 2.17 16 12 N -0.27 -3.76 12.54 32.16 0.40 -3.36 16 13 N -0.05 -0.62 13.47 60.35 0.81 0.19 16 14 N -0.23 -1.93 7.90 60.35 0.48 -1.46 16 15 H 0.47 1.48 8.96 -340.38 -3.05 -1.57 16 16 N -0.31 -3.27 12.39 32.18 0.40 -2.87 16 17 C 0.07 0.70 11.84 -16.83 -0.20 0.50 16 18 N -0.53 -5.56 4.71 -9.54 -0.04 -5.61 16 19 H 0.43 3.48 8.47 -40.82 -0.35 3.14 16 20 C 0.10 1.77 5.91 -3.60 -0.02 1.75 16 21 C 0.15 3.04 3.22 -67.48 -0.22 2.83 16 22 H 0.03 0.73 7.39 -51.93 -0.38 0.34 16 23 C -0.13 -2.40 7.95 37.16 0.30 -2.10 16 24 N -0.58 -12.98 2.67 -156.76 -0.42 -13.40 16 25 C -0.26 -6.28 8.53 -15.06 -0.13 -6.41 16 26 H 0.07 1.71 6.27 -52.49 -0.33 1.38 16 27 C 0.01 0.17 4.85 -17.43 -0.08 0.08 16 28 N -0.89 -23.65 10.27 55.49 0.57 -23.08 16 29 Si 0.90 20.25 29.59 -169.99 -5.03 15.22 16 30 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 31 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 32 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 33 H 0.08 1.94 7.11 -51.93 -0.37 1.57 16 34 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 35 H 0.03 0.56 7.01 -51.93 -0.36 0.20 16 36 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 37 H 0.07 1.06 5.38 -51.93 -0.28 0.78 16 38 H 0.15 2.30 8.06 -52.49 -0.42 1.88 16 39 H 0.18 1.19 8.06 -52.49 -0.42 0.77 16 40 H 0.06 1.08 8.12 -51.93 -0.42 0.66 16 41 H 0.08 1.45 7.00 -51.93 -0.36 1.09 16 42 H 0.07 1.28 7.68 -51.93 -0.40 0.88 16 43 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 44 H 0.05 0.97 7.37 -51.93 -0.38 0.59 16 45 H 0.25 6.61 8.31 -40.82 -0.34 6.27 16 LS Contribution 366.96 15.07 5.53 5.53 Total: -1.00 -31.91 366.96 -9.02 -40.93 By element: Atomic # 1 Polarization: 10.93 SS G_CDS: -8.26 Total: 2.67 kcal Atomic # 6 Polarization: 9.56 SS G_CDS: -3.10 Total: 6.46 kcal Atomic # 7 Polarization: -61.80 SS G_CDS: 1.75 Total: -60.05 kcal Atomic # 8 Polarization: -10.85 SS G_CDS: 0.09 Total: -10.76 kcal Atomic # 14 Polarization: 20.25 SS G_CDS: -5.03 Total: 15.22 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -31.91 -9.02 -40.93 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001590296020.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 215.080 kcal (2) G-P(sol) polarization free energy of solvation -31.907 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 183.172 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.023 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.930 kcal (6) G-S(sol) free energy of system = (1) + (5) 174.150 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds