Wall clock time and date at job start Wed Apr 1 2020 03:14:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09009 * 109.74701 * 2 1 4 4 C 1.53812 * 109.76309 * 239.37788 * 2 1 3 5 5 N 1.46967 * 108.57444 * 289.94705 * 4 2 1 6 6 C 1.34775 * 120.59716 * 124.62570 * 5 4 2 7 7 O 1.21687 * 120.00035 * 186.37661 * 6 5 4 8 8 C 1.46729 * 119.99655 * 6.37214 * 6 5 4 9 9 C 1.36670 * 126.02217 * 227.13035 * 8 6 5 10 10 C 1.40803 * 107.04933 * 180.02562 * 9 8 6 11 11 C 1.48512 * 126.27885 * 179.97438 * 10 9 8 12 12 N 1.34034 * 126.67624 * 359.68646 * 11 10 9 13 13 N 1.28975 * 107.27046 * 179.83608 * 12 11 10 14 14 N 1.28729 * 108.94322 * 0.42848 * 13 12 11 15 15 H 0.97000 * 125.34627 * 179.72834 * 14 13 12 16 16 N 1.28875 * 109.31252 * 359.72607 * 14 13 12 17 17 C 1.36560 * 107.43676 * 359.97438 * 10 9 8 18 18 N 1.34846 * 108.61173 * 359.73500 * 17 10 9 19 19 H 0.96992 * 125.52593 * 180.26033 * 18 17 10 20 20 C 1.46969 * 118.81162 * 304.64265 * 5 4 2 21 21 C 1.53369 * 108.63304 * 55.23086 * 20 5 4 22 22 H 1.08997 * 109.75637 * 70.40290 * 21 20 5 23 23 C 1.53002 * 109.61050 * 190.83337 * 21 20 5 24 24 N 1.46964 * 109.61344 * 120.42646 * 2 1 3 25 25 C 1.36935 * 120.59540 * 244.54712 * 24 2 1 26 26 H 1.08002 * 119.99921 * 209.81969 * 25 24 2 27 27 C 1.38817 * 120.00189 * 29.81855 * 25 24 2 28 28 N 1.31617 * 120.00077 * 18.67631 * 27 25 24 29 29 Si 1.86799 * 119.99909 * 198.68133 * 27 25 24 30 30 H 1.48497 * 109.46829 * 269.99517 * 29 27 25 31 31 H 1.48497 * 109.47196 * 29.99624 * 29 27 25 32 32 H 1.48500 * 109.46811 * 149.99856 * 29 27 25 33 33 H 1.09000 * 109.47689 * 299.56923 * 1 2 3 34 34 H 1.08997 * 109.47679 * 59.57328 * 1 2 3 35 35 H 1.09003 * 109.46650 * 179.57175 * 1 2 3 36 36 H 1.08999 * 109.74374 * 170.15539 * 4 2 1 37 37 H 1.08996 * 109.67262 * 49.68921 * 4 2 1 38 38 H 1.07994 * 126.47366 * 359.97438 * 9 8 6 39 39 H 1.08001 * 125.69186 * 180.02562 * 17 10 9 40 40 H 1.09006 * 109.61144 * 295.48448 * 20 5 4 41 41 H 1.08991 * 109.75155 * 175.05702 * 20 5 4 42 42 H 1.08994 * 109.47211 * 179.14553 * 23 21 20 43 43 H 1.09003 * 109.46854 * 299.14592 * 23 21 20 44 44 H 1.09004 * 109.46979 * 59.13952 * 23 21 20 45 45 H 0.96994 * 120.00353 * 179.97438 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8983 1.0260 0.0000 4 6 2.0500 -0.7373 -1.2457 5 7 1.7611 -2.1705 -1.0960 6 6 1.0604 -2.8311 -2.0389 7 8 0.7272 -3.9864 -1.8516 8 6 0.6992 -2.1572 -3.2912 9 6 -0.5352 -2.1591 -3.8780 10 6 -0.4335 -1.3943 -5.0558 11 6 -1.5275 -1.1186 -6.0217 12 7 -2.7932 -1.5526 -5.9430 13 7 -3.4206 -1.0916 -6.9713 14 7 -2.6018 -0.4016 -7.6858 15 1 -2.8236 0.0495 -8.5153 16 7 -1.4410 -0.4042 -7.1259 17 6 0.8555 -0.9527 -5.1471 18 7 1.5424 -1.4064 -4.0791 19 1 2.4794 -1.2343 -3.8971 20 6 2.2495 -2.8704 0.1004 21 6 1.7343 -2.1343 1.3433 22 1 0.6588 -2.2825 1.4399 23 6 2.4407 -2.6731 2.5890 24 7 2.0233 -0.7011 1.1937 25 6 2.7344 -0.0297 2.1522 26 1 3.4777 -0.5509 2.7373 27 6 2.5000 1.3208 2.3719 28 7 1.3817 1.8718 1.9497 29 14 3.7717 2.3560 3.2665 30 1 3.4972 2.3255 4.7255 31 1 5.1274 1.8087 3.0063 32 1 3.7014 3.7569 2.7787 33 1 -0.3634 0.5071 0.8938 34 1 -0.3634 0.5204 -0.8861 35 1 -0.3633 -1.0277 -0.0077 36 1 3.1258 -0.5888 -1.3391 37 1 1.5492 -0.3541 -2.1347 38 1 -1.4209 -2.6543 -3.5084 39 1 1.2564 -0.3384 -5.9397 40 1 3.3396 -2.8738 0.1028 41 1 1.8806 -3.8960 0.1036 42 1 2.0840 -2.1381 3.4690 43 1 2.2249 -3.7361 2.6977 44 1 3.5164 -2.5293 2.4874 45 1 1.2177 2.8153 2.1035 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001590296020.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:14:16 Heat of formation + Delta-G solvation = 152.451527 kcal Electronic energy + Delta-G solvation = -30750.048791 eV Core-core repulsion = 26613.876692 eV Total energy + Delta-G solvation = -4136.172099 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.165 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -45.29781 -42.59508 -40.69730 -38.83615 -35.75257 -35.29212 -34.57456 -34.33494 -33.00150 -31.90927 -30.68309 -29.66227 -27.87599 -27.15600 -25.69189 -25.55914 -24.92825 -23.11315 -22.66790 -21.33357 -21.14957 -20.60111 -19.87005 -19.03716 -17.99802 -17.70358 -17.53686 -16.83845 -16.64296 -16.31385 -15.79784 -15.71723 -15.39139 -15.19334 -14.97961 -14.84547 -14.65152 -14.34654 -14.07173 -13.65156 -13.53022 -13.50834 -13.05400 -13.02802 -12.90550 -12.76152 -12.45869 -12.35287 -12.32575 -12.26406 -12.03437 -12.02644 -11.97554 -11.78857 -11.59201 -11.36142 -11.06703 -10.45471 -9.93159 -9.76966 -9.20648 -8.50421 -7.78335 -5.24033 0.14252 0.58681 0.68191 1.50553 1.53795 1.54931 1.61680 1.68923 1.88544 2.15859 2.41721 2.57794 2.92913 3.30660 3.35901 3.52535 3.58999 4.13916 4.18734 4.22607 4.29787 4.32710 4.40491 4.49454 4.54878 4.57281 4.60448 4.72854 4.79793 4.85622 4.89554 4.93383 5.04282 5.08141 5.18951 5.34995 5.38041 5.49952 5.53404 5.68331 5.73016 5.74858 5.77534 5.87155 6.37168 6.44080 6.47865 7.04126 7.23569 7.28129 7.90921 8.45751 9.26046 Molecular weight = 345.17amu Principal moments of inertia in cm(-1) A = 0.015584 B = 0.002908 C = 0.002640 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1796.320401 B = 9624.869428 C =10602.558526 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C 0.180 3.820 3 H 0.077 0.923 4 C 0.096 3.904 5 N -0.589 5.589 6 C 0.584 3.416 7 O -0.574 6.574 8 C -0.046 4.046 9 C -0.092 4.092 10 C -0.140 4.140 11 C 0.254 3.746 12 N -0.309 5.309 13 N -0.064 5.064 14 N -0.203 5.203 15 H 0.493 0.507 16 N -0.299 5.299 17 C 0.110 3.890 18 N -0.511 5.511 19 H 0.440 0.560 20 C 0.110 3.890 21 C 0.150 3.850 22 H 0.006 0.994 23 C -0.126 4.126 24 N -0.592 5.592 25 C -0.253 4.253 26 H 0.074 0.926 27 C -0.041 4.041 28 N -0.921 5.921 29 Si 0.955 3.045 30 H -0.295 1.295 31 H -0.271 1.271 32 H -0.297 1.297 33 H 0.041 0.959 34 H 0.042 0.958 35 H 0.018 0.982 36 H 0.081 0.919 37 H 0.094 0.906 38 H 0.136 0.864 39 H 0.224 0.776 40 H 0.080 0.920 41 H 0.083 0.917 42 H 0.044 0.956 43 H 0.070 0.930 44 H 0.061 0.939 45 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.274 -2.453 -19.438 19.633 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.073 3.927 3 H 0.095 0.905 4 C -0.028 4.028 5 N -0.319 5.319 6 C 0.373 3.627 7 O -0.454 6.454 8 C -0.158 4.158 9 C -0.119 4.119 10 C -0.150 4.150 11 C -0.025 4.025 12 N -0.182 5.182 13 N -0.059 5.059 14 N -0.054 5.054 15 H 0.352 0.648 16 N -0.152 5.152 17 C -0.033 4.033 18 N -0.108 5.108 19 H 0.282 0.718 20 C -0.014 4.014 21 C 0.043 3.957 22 H 0.023 0.977 23 C -0.184 4.184 24 N -0.315 5.315 25 C -0.383 4.383 26 H 0.092 0.908 27 C -0.237 4.237 28 N -0.566 5.566 29 Si 0.785 3.215 30 H -0.222 1.222 31 H -0.196 1.196 32 H -0.223 1.223 33 H 0.060 0.940 34 H 0.061 0.939 35 H 0.037 0.963 36 H 0.099 0.901 37 H 0.112 0.888 38 H 0.154 0.846 39 H 0.241 0.759 40 H 0.098 0.902 41 H 0.102 0.898 42 H 0.063 0.937 43 H 0.088 0.912 44 H 0.080 0.920 45 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 0.624 -2.954 -19.424 19.657 hybrid contribution 0.534 1.179 0.729 1.485 sum 1.157 -1.775 -18.695 18.815 Atomic orbital electron populations 1.21818 0.98573 0.97958 1.00198 1.20671 0.91812 0.95841 0.84359 0.90514 1.22655 1.01237 0.78865 1.00070 1.48012 1.52805 1.10730 1.20388 1.17439 0.77405 0.85053 0.82814 1.90782 1.55380 1.18464 1.80761 1.19546 0.92689 1.06853 0.96729 1.20860 0.96091 1.00447 0.94523 1.16381 0.91251 1.10879 0.96500 1.22900 0.91913 0.95148 0.92576 1.76108 1.05211 1.21840 1.15003 1.78841 1.20102 1.06882 1.00042 1.47731 1.02896 1.33188 1.21586 0.64831 1.74844 1.07372 1.22927 1.10037 1.22372 0.89960 0.98886 0.92112 1.41896 1.12864 1.37895 1.18148 0.71831 1.22151 0.99111 0.96132 0.84015 1.20898 0.95532 0.85338 0.93918 0.97678 1.21663 1.00532 0.99752 0.96438 1.44405 1.62975 1.04094 1.20074 1.19401 1.12572 0.92219 1.14117 0.90844 1.25676 0.97538 0.99873 1.00651 1.70170 1.23461 1.11506 1.51460 0.85477 0.80109 0.78060 0.77861 1.22239 1.19566 1.22346 0.93984 0.93863 0.96283 0.90069 0.88761 0.84612 0.75924 0.90171 0.89819 0.93727 0.91161 0.92042 0.94438 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.50 8.96 71.98 0.65 -4.85 16 2 C 0.18 7.54 2.36 45.18 0.11 7.65 16 3 H 0.08 3.65 6.16 -2.38 -0.01 3.64 16 4 C 0.10 2.99 5.40 86.56 0.47 3.45 16 5 N -0.59 -19.31 2.59 -821.80 -2.13 -21.44 16 6 C 0.58 19.69 7.56 86.46 0.65 20.35 16 7 O -0.57 -23.22 16.52 -4.31 -0.07 -23.29 16 8 C -0.05 -1.26 5.57 40.08 0.22 -1.04 16 9 C -0.09 -2.64 10.78 22.53 0.24 -2.39 16 10 C -0.14 -3.30 6.10 -20.30 -0.12 -3.42 16 11 C 0.25 6.14 8.18 137.40 1.12 7.27 16 12 N -0.31 -8.50 12.54 -52.16 -0.65 -9.15 16 13 N -0.06 -1.38 13.47 37.02 0.50 -0.88 16 14 N -0.20 -2.88 7.90 37.02 0.29 -2.59 16 15 H 0.49 1.70 8.96 -347.54 -3.12 -1.42 16 16 N -0.30 -5.50 12.39 -52.10 -0.65 -6.14 16 17 C 0.11 1.75 11.84 83.84 0.99 2.74 16 18 N -0.51 -9.13 4.71 -184.11 -0.87 -10.00 16 19 H 0.44 5.39 8.47 -92.71 -0.79 4.60 16 20 C 0.11 3.72 5.91 86.41 0.51 4.23 16 21 C 0.15 5.93 3.22 45.03 0.15 6.08 16 22 H 0.01 0.25 7.39 -2.39 -0.02 0.23 16 23 C -0.13 -4.40 7.95 71.98 0.57 -3.82 16 24 N -0.59 -26.55 2.67 -649.87 -1.74 -28.29 16 25 C -0.25 -12.43 8.53 84.04 0.72 -11.72 16 26 H 0.07 3.52 6.27 -2.91 -0.02 3.50 16 27 C -0.04 -2.10 4.85 84.86 0.41 -1.68 16 28 N -0.92 -49.84 10.27 21.65 0.22 -49.61 16 29 Si 0.96 41.86 29.59 68.60 2.03 43.89 16 30 H -0.29 -13.17 7.11 99.48 0.71 -12.46 16 31 H -0.27 -11.32 7.11 99.48 0.71 -10.61 16 32 H -0.30 -13.21 7.11 99.48 0.71 -12.50 16 33 H 0.04 2.12 7.11 -2.39 -0.02 2.11 16 34 H 0.04 1.69 8.14 -2.39 -0.02 1.67 16 35 H 0.02 0.81 7.01 -2.39 -0.02 0.79 16 36 H 0.08 2.29 8.14 -2.39 -0.02 2.27 16 37 H 0.09 2.52 5.38 -2.39 -0.01 2.51 16 38 H 0.14 4.27 8.06 -2.91 -0.02 4.25 16 39 H 0.22 1.65 8.06 -2.91 -0.02 1.62 16 40 H 0.08 2.49 8.12 -2.38 -0.02 2.47 16 41 H 0.08 2.86 7.00 -2.39 -0.02 2.84 16 42 H 0.04 1.72 7.68 -2.39 -0.02 1.71 16 43 H 0.07 2.03 8.14 -2.39 -0.02 2.01 16 44 H 0.06 2.06 7.37 -2.38 -0.02 2.04 16 45 H 0.25 13.20 8.31 -92.71 -0.77 12.42 16 Total: -1.00 -71.76 366.96 0.80 -70.96 By element: Atomic # 1 Polarization: 16.52 SS G_CDS: -2.82 Total: 13.69 kcal Atomic # 6 Polarization: 16.15 SS G_CDS: 6.69 Total: 22.84 kcal Atomic # 7 Polarization: -123.07 SS G_CDS: -5.02 Total: -128.09 kcal Atomic # 8 Polarization: -23.22 SS G_CDS: -0.07 Total: -23.29 kcal Atomic # 14 Polarization: 41.86 SS G_CDS: 2.03 Total: 43.89 kcal Total: -71.76 0.80 -70.96 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001590296020.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 223.412 kcal (2) G-P(sol) polarization free energy of solvation -71.761 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 151.651 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.801 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.961 kcal (6) G-S(sol) free energy of system = (1) + (5) 152.452 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds