Wall clock time and date at job start Wed Apr 1 2020 03:10:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09003 * 110.28756 * 2 1 4 4 C 1.54001 * 110.32878 * 237.86102 * 2 1 3 5 5 N 1.47482 * 107.08626 * 242.30868 * 4 2 1 6 6 C 1.34773 * 127.03773 * 154.51554 * 5 4 2 7 7 O 1.21687 * 120.00457 * 177.99823 * 6 5 4 8 8 C 1.46727 * 119.99770 * 358.27440 * 6 5 4 9 9 C 1.36671 * 126.02704 * 187.37395 * 8 6 5 10 10 C 1.40798 * 107.05306 * 179.90695 * 9 8 6 11 11 C 1.48513 * 126.28032 * 180.13852 * 10 9 8 12 12 N 1.34032 * 126.67387 * 359.92022 * 11 10 9 13 13 N 1.28978 * 107.27056 * 179.83807 * 12 11 10 14 14 N 1.28737 * 108.93982 * 0.43351 * 13 12 11 15 15 H 0.96999 * 125.34238 * 179.72598 * 14 13 12 16 16 N 1.28868 * 109.31176 * 359.72820 * 14 13 12 17 17 C 1.36560 * 107.43496 * 0.35653 * 10 9 8 18 18 N 1.34838 * 108.61264 * 359.78133 * 17 10 9 19 19 H 0.97003 * 125.52553 * 179.97438 * 18 17 10 20 20 C 1.48121 * 105.93224 * 334.77951 * 5 4 2 21 21 C 1.54603 * 103.42232 * 39.02072 * 20 5 4 22 22 H 1.08999 * 110.57193 * 81.16919 * 21 20 5 23 23 C 1.52994 * 110.98886 * 204.37061 * 21 20 5 24 24 N 1.46494 * 109.47632 * 288.65261 * 23 21 20 25 25 C 1.36932 * 120.00278 * 179.97438 * 24 23 21 26 26 H 1.08002 * 120.00324 * 359.97438 * 25 24 23 27 27 C 1.38810 * 120.00341 * 180.02562 * 25 24 23 28 28 N 1.31622 * 119.99781 * 0.02562 * 27 25 24 29 29 Si 1.86799 * 120.00205 * 179.97438 * 27 25 24 30 30 H 1.48494 * 109.47410 * 0.02562 * 29 27 25 31 31 H 1.48505 * 109.46862 * 120.00162 * 29 27 25 32 32 H 1.48501 * 109.47333 * 239.99773 * 29 27 25 33 33 H 1.09003 * 109.46660 * 180.68452 * 1 2 3 34 34 H 1.08999 * 109.47235 * 300.68224 * 1 2 3 35 35 H 1.08994 * 109.46776 * 60.68649 * 1 2 3 36 36 H 1.08998 * 109.91152 * 122.95157 * 4 2 1 37 37 H 1.08994 * 109.91359 * 1.67504 * 4 2 1 38 38 H 1.08002 * 126.46634 * 0.02562 * 9 8 6 39 39 H 1.08002 * 125.69443 * 179.75480 * 17 10 9 40 40 H 1.09000 * 110.66101 * 157.50295 * 20 5 4 41 41 H 1.08997 * 110.66111 * 280.62276 * 20 5 4 42 42 H 1.09003 * 109.47251 * 48.65779 * 23 21 20 43 43 H 1.08997 * 109.46843 * 168.65085 * 23 21 20 44 44 H 0.97001 * 119.99662 * 0.02562 * 24 23 21 45 45 H 0.97005 * 119.99759 * 179.97438 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9080 1.0224 0.0000 4 6 2.0650 -0.7682 -1.2228 5 7 2.8299 -1.9203 -0.7101 6 6 3.0647 -3.0859 -1.3445 7 8 3.7473 -3.9415 -0.8126 8 6 2.5022 -3.3210 -2.6792 9 6 2.5407 -4.4987 -3.3717 10 6 1.8849 -4.2782 -4.5979 11 6 1.6793 -5.2779 -5.6768 12 7 2.0817 -6.5564 -5.6707 13 7 1.7057 -7.0814 -6.7872 14 7 1.0987 -6.1868 -7.4862 15 1 0.7216 -6.3251 -8.3691 16 7 1.0708 -5.0788 -6.8288 17 6 1.4768 -2.9751 -4.6152 18 7 1.8480 -2.3925 -3.4572 19 1 1.6813 -1.4689 -3.2121 20 6 3.2817 -1.5367 0.6473 21 6 2.0693 -0.7718 1.2264 22 1 1.3210 -1.4691 1.6032 23 6 2.5071 0.1968 2.3267 24 7 2.9001 -0.5614 3.5170 25 6 3.3317 0.0976 4.6370 26 1 3.3828 1.1764 4.6429 27 6 3.7045 -0.6209 5.7647 28 7 3.6436 -1.9357 5.7572 29 14 4.2940 0.2781 7.2924 30 1 4.2705 1.7421 7.0452 31 1 3.3997 -0.0453 8.4330 32 1 5.6798 -0.1480 7.6137 33 1 -0.3633 -1.0276 0.0123 34 1 -0.3633 0.5244 0.8838 35 1 -0.3633 0.5031 -0.8960 36 1 2.7167 -0.1222 -1.8110 37 1 1.2335 -1.1173 -1.8348 38 1 2.9878 -5.4241 -3.0399 39 1 0.9459 -2.4917 -5.4219 40 1 3.4981 -2.4221 1.2452 41 1 4.1541 -0.8856 0.5926 42 1 3.3539 0.7867 1.9758 43 1 1.6799 0.8614 2.5760 44 1 2.8552 -1.5304 3.5114 45 1 3.9045 -2.4378 6.5451 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001590296148.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:10:09 Heat of formation + Delta-G solvation = 160.547417 kcal Electronic energy + Delta-G solvation = -29095.401140 eV Core-core repulsion = 24959.580105 eV Total energy + Delta-G solvation = -4135.821035 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.165 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -44.63098 -41.87332 -39.78330 -37.85894 -34.83529 -34.58349 -33.83063 -32.93379 -31.58369 -31.17330 -30.05836 -28.86991 -26.73248 -25.72822 -24.94500 -24.25286 -23.51582 -22.10692 -21.10107 -20.64808 -20.46590 -19.99255 -19.21052 -17.91012 -17.33524 -16.99493 -16.41857 -16.15588 -15.52017 -15.07106 -14.79182 -14.51463 -14.25698 -14.13699 -14.05790 -13.62389 -13.52946 -13.34431 -13.05005 -12.97738 -12.84578 -12.44166 -12.36784 -12.12847 -12.01324 -11.63868 -11.40942 -11.34896 -11.31436 -11.18527 -10.89645 -10.67129 -10.55319 -10.44209 -10.11587 -9.99287 -9.69497 -9.20483 -8.90400 -8.80301 -8.51719 -6.94161 -5.76409 -3.06281 0.78283 1.19902 1.43735 2.00646 2.60195 2.78182 2.84276 3.27401 3.43657 3.48681 3.51545 3.61803 3.98357 4.28871 4.30116 4.54208 4.60598 4.69631 4.73348 5.00187 5.06570 5.09738 5.12189 5.26717 5.38238 5.40442 5.54419 5.56534 5.64321 5.67129 5.77274 5.85813 5.93902 6.04490 6.08363 6.10907 6.12680 6.24315 6.34240 6.35974 6.47440 6.65540 6.77531 6.88234 7.43985 7.69408 7.96622 8.07186 8.41470 9.52900 10.09416 10.43464 11.46110 Molecular weight = 345.17amu Principal moments of inertia in cm(-1) A = 0.023889 B = 0.001931 C = 0.001822 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1171.816383 B =14497.467344 C =15363.764289 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.098 4.098 3 H 0.091 0.909 4 C 0.093 3.907 5 N -0.621 5.621 6 C 0.603 3.397 7 O -0.518 6.518 8 C -0.039 4.039 9 C -0.063 4.063 10 C -0.120 4.120 11 C 0.264 3.736 12 N -0.268 5.268 13 N -0.052 5.052 14 N -0.233 5.233 15 H 0.473 0.527 16 N -0.309 5.309 17 C 0.075 3.925 18 N -0.534 5.534 19 H 0.424 0.576 20 C 0.116 3.884 21 C -0.102 4.102 22 H 0.085 0.915 23 C 0.166 3.834 24 N -0.733 5.733 25 C -0.243 4.243 26 H 0.071 0.929 27 C -0.013 4.013 28 N -0.930 5.930 29 Si 0.907 3.093 30 H -0.281 1.281 31 H -0.292 1.292 32 H -0.291 1.291 33 H 0.056 0.944 34 H 0.066 0.934 35 H 0.053 0.947 36 H 0.071 0.929 37 H 0.068 0.932 38 H 0.161 0.839 39 H 0.183 0.817 40 H 0.093 0.907 41 H 0.078 0.922 42 H 0.021 0.979 43 H 0.024 0.976 44 H 0.385 0.615 45 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.257 0.436 -29.606 31.022 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.118 4.118 3 H 0.110 0.890 4 C -0.031 4.031 5 N -0.355 5.355 6 C 0.392 3.608 7 O -0.393 6.393 8 C -0.151 4.151 9 C -0.090 4.090 10 C -0.130 4.130 11 C -0.016 4.016 12 N -0.141 5.141 13 N -0.048 5.048 14 N -0.078 5.078 15 H 0.327 0.673 16 N -0.161 5.161 17 C -0.067 4.067 18 N -0.135 5.135 19 H 0.269 0.731 20 C -0.005 4.005 21 C -0.122 4.122 22 H 0.104 0.896 23 C 0.038 3.962 24 N -0.377 5.377 25 C -0.374 4.374 26 H 0.089 0.911 27 C -0.209 4.209 28 N -0.578 5.578 29 Si 0.738 3.262 30 H -0.206 1.206 31 H -0.219 1.219 32 H -0.218 1.218 33 H 0.075 0.925 34 H 0.085 0.915 35 H 0.072 0.928 36 H 0.089 0.911 37 H 0.085 0.915 38 H 0.178 0.822 39 H 0.200 0.800 40 H 0.111 0.889 41 H 0.096 0.904 42 H 0.039 0.961 43 H 0.041 0.959 44 H 0.218 0.782 45 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -8.738 -0.425 -29.404 30.678 hybrid contribution -0.164 0.935 0.456 1.053 sum -8.902 0.510 -28.948 30.290 Atomic orbital electron populations 1.21861 0.93953 1.02142 1.02143 1.22079 0.96453 0.99808 0.93435 0.89041 1.22459 0.94861 0.88087 0.97722 1.48768 1.53691 1.14230 1.18845 1.16582 0.80336 0.80811 0.83060 1.90908 1.38626 1.43448 1.66311 1.20134 1.09047 0.90958 0.94921 1.21028 0.98925 0.97527 0.91520 1.16338 1.11794 0.91086 0.93782 1.22803 0.95963 0.91342 0.91521 1.76141 1.19705 1.06857 1.11419 1.78933 1.08358 1.17941 0.99522 1.47669 1.37630 1.04090 1.18450 0.67289 1.74881 1.23854 1.10152 1.07175 1.21894 1.01604 0.92986 0.90241 1.42667 1.43582 1.13022 1.14250 0.73088 1.22561 0.96876 1.00451 0.80589 1.22535 0.97145 0.97902 0.94600 0.89616 1.20611 0.96610 0.92666 0.86356 1.42368 1.79265 1.05957 1.10113 1.19233 1.36125 0.91258 0.90764 0.91128 1.24761 1.02285 0.95493 0.98344 1.69674 1.54172 1.04534 1.29432 0.86127 0.78126 0.78579 0.83380 1.20588 1.21883 1.21835 0.92515 0.91479 0.92775 0.91054 0.91459 0.82159 0.80028 0.88857 0.90407 0.96076 0.95871 0.78162 0.93466 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.26 8.90 37.16 0.33 -0.93 16 2 C -0.10 -0.98 3.17 -89.25 -0.28 -1.27 16 3 H 0.09 0.84 7.85 -51.93 -0.41 0.43 16 4 C 0.09 0.81 5.26 -2.98 -0.02 0.80 16 5 N -0.62 -8.12 3.29 -171.50 -0.56 -8.68 16 6 C 0.60 8.96 7.86 -12.83 -0.10 8.86 16 7 O -0.52 -9.88 17.10 5.20 0.09 -9.79 16 8 C -0.04 -0.46 6.82 -82.38 -0.56 -1.02 16 9 C -0.06 -0.76 10.57 -39.18 -0.41 -1.17 16 10 C -0.12 -1.22 6.10 -105.30 -0.64 -1.86 16 11 C 0.26 2.81 8.18 -156.31 -1.28 1.53 16 12 N -0.27 -3.22 12.54 32.16 0.40 -2.81 16 13 N -0.05 -0.50 13.47 60.35 0.81 0.31 16 14 N -0.23 -1.48 7.90 60.35 0.48 -1.01 16 15 H 0.47 0.64 8.96 -340.37 -3.05 -2.41 16 16 N -0.31 -2.60 12.39 32.18 0.40 -2.20 16 17 C 0.08 0.54 11.84 -16.84 -0.20 0.34 16 18 N -0.53 -4.10 5.39 -9.54 -0.05 -4.15 16 19 H 0.42 2.20 5.25 -40.82 -0.21 1.99 16 20 C 0.12 1.80 6.44 -2.31 -0.01 1.79 16 21 C -0.10 -1.49 2.60 -88.93 -0.23 -1.72 16 22 H 0.09 1.37 7.86 -51.93 -0.41 0.97 16 23 C 0.17 3.05 5.58 -4.05 -0.02 3.02 16 24 N -0.73 -17.95 5.52 -59.92 -0.33 -18.28 16 25 C -0.24 -6.68 9.99 -15.06 -0.15 -6.83 16 26 H 0.07 1.88 7.83 -52.49 -0.41 1.47 16 27 C -0.01 -0.36 5.50 -17.43 -0.10 -0.45 16 28 N -0.93 -28.23 13.06 55.49 0.72 -27.51 16 29 Si 0.91 22.33 29.55 -169.99 -5.02 17.31 16 30 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 31 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 32 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 33 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 34 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 35 H 0.05 0.35 8.14 -51.93 -0.42 -0.08 16 36 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 37 H 0.07 0.45 5.02 -51.93 -0.26 0.19 16 38 H 0.16 2.04 8.06 -52.49 -0.42 1.62 16 39 H 0.18 0.71 8.06 -52.49 -0.42 0.28 16 40 H 0.09 1.73 7.87 -51.93 -0.41 1.33 16 41 H 0.08 1.20 7.95 -51.93 -0.41 0.79 16 42 H 0.02 0.39 8.00 -51.93 -0.42 -0.02 16 43 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 44 H 0.38 10.07 7.67 -40.82 -0.31 9.76 16 45 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 LS Contribution 379.71 15.07 5.72 5.72 Total: -1.00 -36.60 379.71 -9.42 -46.02 By element: Atomic # 1 Polarization: 12.37 SS G_CDS: -8.40 Total: 3.98 kcal Atomic # 6 Polarization: 4.77 SS G_CDS: -3.68 Total: 1.09 kcal Atomic # 7 Polarization: -66.20 SS G_CDS: 1.87 Total: -64.33 kcal Atomic # 8 Polarization: -9.88 SS G_CDS: 0.09 Total: -9.79 kcal Atomic # 14 Polarization: 22.33 SS G_CDS: -5.02 Total: 17.31 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -36.60 -9.42 -46.02 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001590296148.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 206.570 kcal (2) G-P(sol) polarization free energy of solvation -36.603 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 169.967 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.420 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.023 kcal (6) G-S(sol) free energy of system = (1) + (5) 160.547 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds