Wall clock time and date at job start Wed Apr 1 2020 03:10:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09003 * 110.28756 * 2 1 4 4 C 1.54001 * 110.32878 * 237.86102 * 2 1 3 5 5 N 1.47482 * 107.08626 * 242.30868 * 4 2 1 6 6 C 1.34773 * 127.03773 * 154.51554 * 5 4 2 7 7 O 1.21687 * 120.00457 * 177.99823 * 6 5 4 8 8 C 1.46727 * 119.99770 * 358.27440 * 6 5 4 9 9 C 1.36671 * 126.02704 * 187.37395 * 8 6 5 10 10 C 1.40798 * 107.05306 * 179.90695 * 9 8 6 11 11 C 1.48513 * 126.28032 * 180.13852 * 10 9 8 12 12 N 1.34032 * 126.67387 * 359.92022 * 11 10 9 13 13 N 1.28978 * 107.27056 * 179.83807 * 12 11 10 14 14 N 1.28737 * 108.93982 * 0.43351 * 13 12 11 15 15 H 0.96999 * 125.34238 * 179.72598 * 14 13 12 16 16 N 1.28868 * 109.31176 * 359.72820 * 14 13 12 17 17 C 1.36560 * 107.43496 * 0.35653 * 10 9 8 18 18 N 1.34838 * 108.61264 * 359.78133 * 17 10 9 19 19 H 0.97003 * 125.52553 * 179.97438 * 18 17 10 20 20 C 1.48121 * 105.93224 * 334.77951 * 5 4 2 21 21 C 1.54603 * 103.42232 * 39.02072 * 20 5 4 22 22 H 1.08999 * 110.57193 * 81.16919 * 21 20 5 23 23 C 1.52994 * 110.98886 * 204.37061 * 21 20 5 24 24 N 1.46494 * 109.47632 * 288.65261 * 23 21 20 25 25 C 1.36932 * 120.00278 * 179.97438 * 24 23 21 26 26 H 1.08002 * 120.00324 * 359.97438 * 25 24 23 27 27 C 1.38810 * 120.00341 * 180.02562 * 25 24 23 28 28 N 1.31622 * 119.99781 * 0.02562 * 27 25 24 29 29 Si 1.86799 * 120.00205 * 179.97438 * 27 25 24 30 30 H 1.48494 * 109.47410 * 0.02562 * 29 27 25 31 31 H 1.48505 * 109.46862 * 120.00162 * 29 27 25 32 32 H 1.48501 * 109.47333 * 239.99773 * 29 27 25 33 33 H 1.09003 * 109.46660 * 180.68452 * 1 2 3 34 34 H 1.08999 * 109.47235 * 300.68224 * 1 2 3 35 35 H 1.08994 * 109.46776 * 60.68649 * 1 2 3 36 36 H 1.08998 * 109.91152 * 122.95157 * 4 2 1 37 37 H 1.08994 * 109.91359 * 1.67504 * 4 2 1 38 38 H 1.08002 * 126.46634 * 0.02562 * 9 8 6 39 39 H 1.08002 * 125.69443 * 179.75480 * 17 10 9 40 40 H 1.09000 * 110.66101 * 157.50295 * 20 5 4 41 41 H 1.08997 * 110.66111 * 280.62276 * 20 5 4 42 42 H 1.09003 * 109.47251 * 48.65779 * 23 21 20 43 43 H 1.08997 * 109.46843 * 168.65085 * 23 21 20 44 44 H 0.97001 * 119.99662 * 0.02562 * 24 23 21 45 45 H 0.97005 * 119.99759 * 179.97438 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9080 1.0224 0.0000 4 6 2.0650 -0.7682 -1.2228 5 7 2.8299 -1.9203 -0.7101 6 6 3.0647 -3.0859 -1.3445 7 8 3.7473 -3.9415 -0.8126 8 6 2.5022 -3.3210 -2.6792 9 6 2.5407 -4.4987 -3.3717 10 6 1.8849 -4.2782 -4.5979 11 6 1.6793 -5.2779 -5.6768 12 7 2.0817 -6.5564 -5.6707 13 7 1.7057 -7.0814 -6.7872 14 7 1.0987 -6.1868 -7.4862 15 1 0.7216 -6.3251 -8.3691 16 7 1.0708 -5.0788 -6.8288 17 6 1.4768 -2.9751 -4.6152 18 7 1.8480 -2.3925 -3.4572 19 1 1.6813 -1.4689 -3.2121 20 6 3.2817 -1.5367 0.6473 21 6 2.0693 -0.7718 1.2264 22 1 1.3210 -1.4691 1.6032 23 6 2.5071 0.1968 2.3267 24 7 2.9001 -0.5614 3.5170 25 6 3.3317 0.0976 4.6370 26 1 3.3828 1.1764 4.6429 27 6 3.7045 -0.6209 5.7647 28 7 3.6436 -1.9357 5.7572 29 14 4.2940 0.2781 7.2924 30 1 4.2705 1.7421 7.0452 31 1 3.3997 -0.0453 8.4330 32 1 5.6798 -0.1480 7.6137 33 1 -0.3633 -1.0276 0.0123 34 1 -0.3633 0.5244 0.8838 35 1 -0.3633 0.5031 -0.8960 36 1 2.7167 -0.1222 -1.8110 37 1 1.2335 -1.1173 -1.8348 38 1 2.9878 -5.4241 -3.0399 39 1 0.9459 -2.4917 -5.4219 40 1 3.4981 -2.4221 1.2452 41 1 4.1541 -0.8856 0.5926 42 1 3.3539 0.7867 1.9758 43 1 1.6799 0.8614 2.5760 44 1 2.8552 -1.5304 3.5114 45 1 3.9045 -2.4378 6.5451 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001590296148.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:10:08 Heat of formation + Delta-G solvation = 132.427378 kcal Electronic energy + Delta-G solvation = -29096.620517 eV Core-core repulsion = 24959.580105 eV Total energy + Delta-G solvation = -4137.040412 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.165 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -45.31736 -42.68319 -40.82287 -39.04979 -36.50442 -35.35023 -34.62870 -34.14656 -33.07731 -32.04848 -31.19595 -30.09275 -27.55152 -27.21371 -25.63516 -25.31012 -24.87125 -23.35680 -22.13486 -21.49527 -21.29365 -21.04357 -19.93135 -19.24266 -18.55430 -18.01559 -17.40182 -17.30116 -16.57327 -16.50307 -15.85820 -15.63359 -15.34310 -15.23813 -14.98806 -14.90563 -14.83596 -14.47187 -14.28586 -14.06521 -13.66683 -13.59691 -13.35433 -13.17158 -13.02694 -12.91588 -12.79258 -12.44467 -12.35217 -12.09352 -12.04728 -12.03910 -11.95766 -11.80056 -11.57398 -11.47102 -11.27933 -10.94320 -10.07424 -9.81460 -9.28514 -8.99134 -7.94106 -5.23422 0.12388 0.36039 0.62443 1.47459 1.48643 1.53944 1.58639 1.68912 1.95729 2.03959 2.29238 2.56476 2.88382 3.26088 3.35490 3.40713 3.44819 3.68919 3.78878 4.06958 4.18644 4.18911 4.25604 4.30499 4.34490 4.44387 4.51489 4.55409 4.58303 4.76184 4.79112 4.83390 4.87335 4.93388 5.03606 5.06796 5.19366 5.26052 5.35235 5.41097 5.49838 5.53383 5.62464 5.73506 6.27509 6.30100 6.41096 6.95418 7.26388 7.33466 8.10427 8.31075 9.29776 Molecular weight = 345.17amu Principal moments of inertia in cm(-1) A = 0.023889 B = 0.001931 C = 0.001822 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1171.816383 B =14497.467344 C =15363.764289 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.087 4.087 3 H 0.112 0.888 4 C 0.089 3.911 5 N -0.618 5.618 6 C 0.597 3.403 7 O -0.580 6.580 8 C -0.055 4.055 9 C -0.076 4.076 10 C -0.143 4.143 11 C 0.251 3.749 12 N -0.310 5.310 13 N -0.064 5.064 14 N -0.202 5.202 15 H 0.493 0.507 16 N -0.295 5.295 17 C 0.120 3.880 18 N -0.514 5.514 19 H 0.439 0.561 20 C 0.118 3.882 21 C -0.094 4.094 22 H 0.065 0.935 23 C 0.165 3.835 24 N -0.749 5.749 25 C -0.240 4.240 26 H 0.082 0.918 27 C -0.081 4.081 28 N -0.973 5.973 29 Si 0.974 3.026 30 H -0.261 1.261 31 H -0.295 1.295 32 H -0.297 1.297 33 H 0.046 0.954 34 H 0.055 0.945 35 H 0.091 0.909 36 H 0.107 0.893 37 H 0.096 0.904 38 H 0.136 0.864 39 H 0.230 0.770 40 H 0.047 0.953 41 H 0.078 0.922 42 H 0.031 0.969 43 H 0.033 0.967 44 H 0.370 0.630 45 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.245 3.891 -33.037 35.114 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.106 4.106 3 H 0.130 0.870 4 C -0.033 4.033 5 N -0.351 5.351 6 C 0.388 3.612 7 O -0.460 6.460 8 C -0.166 4.166 9 C -0.104 4.104 10 C -0.152 4.152 11 C -0.029 4.029 12 N -0.182 5.182 13 N -0.059 5.059 14 N -0.053 5.053 15 H 0.352 0.648 16 N -0.148 5.148 17 C -0.024 4.024 18 N -0.116 5.116 19 H 0.287 0.713 20 C -0.004 4.004 21 C -0.114 4.114 22 H 0.083 0.917 23 C 0.038 3.962 24 N -0.391 5.391 25 C -0.372 4.372 26 H 0.100 0.900 27 C -0.273 4.273 28 N -0.624 5.624 29 Si 0.803 3.197 30 H -0.185 1.185 31 H -0.222 1.222 32 H -0.224 1.224 33 H 0.065 0.935 34 H 0.074 0.926 35 H 0.110 0.890 36 H 0.125 0.875 37 H 0.114 0.886 38 H 0.154 0.846 39 H 0.246 0.754 40 H 0.065 0.935 41 H 0.096 0.904 42 H 0.049 0.951 43 H 0.051 0.949 44 H 0.202 0.798 45 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -10.770 3.121 -32.891 34.750 hybrid contribution 0.382 -0.116 1.348 1.406 sum -10.388 3.004 -31.543 33.345 Atomic orbital electron populations 1.21866 0.92588 1.01913 1.03515 1.22085 0.97498 1.00114 0.90951 0.86973 1.22812 0.96021 0.86747 0.97709 1.48761 1.53546 1.15019 1.17729 1.17051 0.79688 0.80400 0.84025 1.90866 1.41529 1.45498 1.68060 1.19467 1.11137 0.92002 0.94013 1.20977 0.99403 0.97103 0.92914 1.16429 1.13015 0.92612 0.93187 1.22917 0.96545 0.91120 0.92308 1.76128 1.21366 1.08047 1.12696 1.78874 1.09124 1.18425 0.99489 1.47753 1.35713 1.03088 1.18767 0.64772 1.74828 1.23216 1.10405 1.06368 1.22525 0.98437 0.91499 0.89962 1.42530 1.42381 1.13073 1.13657 0.71251 1.22320 0.97613 0.98616 0.81867 1.22345 0.96191 0.97285 0.95531 0.91660 1.20808 0.96935 0.93097 0.85335 1.42653 1.79285 1.05687 1.11487 1.19705 1.34168 0.91869 0.91482 0.90049 1.25624 1.03723 0.96231 1.01703 1.69852 1.56339 1.06220 1.29961 0.85057 0.76837 0.78377 0.79394 1.18504 1.22241 1.22432 0.93522 0.92576 0.89024 0.87511 0.88603 0.84583 0.75362 0.93475 0.90379 0.95110 0.94878 0.79824 0.94180 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.98 8.90 71.98 0.64 -1.34 16 2 C -0.09 -1.47 3.17 -9.90 -0.03 -1.50 16 3 H 0.11 1.53 7.85 -2.39 -0.02 1.51 16 4 C 0.09 1.24 5.26 86.53 0.45 1.69 16 5 N -0.62 -16.02 3.29 -814.73 -2.68 -18.71 16 6 C 0.60 18.45 7.86 86.46 0.68 19.13 16 7 O -0.58 -24.24 17.10 -4.31 -0.07 -24.31 16 8 C -0.05 -1.25 6.82 40.08 0.27 -0.97 16 9 C -0.08 -1.88 10.57 22.53 0.24 -1.64 16 10 C -0.14 -2.68 6.10 -20.30 -0.12 -2.80 16 11 C 0.25 5.02 8.18 137.41 1.12 6.14 16 12 N -0.31 -7.47 12.54 -52.16 -0.65 -8.12 16 13 N -0.06 -1.19 13.47 37.02 0.50 -0.69 16 14 N -0.20 -2.14 7.90 37.02 0.29 -1.85 16 15 H 0.49 0.01 8.96 -347.54 -3.12 -3.10 16 16 N -0.30 -4.17 12.39 -52.11 -0.65 -4.82 16 17 C 0.12 1.21 11.84 83.84 0.99 2.20 16 18 N -0.51 -5.97 5.39 -184.11 -0.99 -6.97 16 19 H 0.44 2.23 5.25 -92.71 -0.49 1.74 16 20 C 0.12 3.83 6.44 86.61 0.56 4.39 16 21 C -0.09 -2.73 2.60 -9.70 -0.03 -2.75 16 22 H 0.06 2.17 7.86 -2.39 -0.02 2.16 16 23 C 0.16 5.99 5.58 86.38 0.48 6.47 16 24 N -0.75 -37.65 5.52 -343.48 -1.90 -39.55 16 25 C -0.24 -13.33 9.99 84.03 0.84 -12.49 16 26 H 0.08 4.25 7.83 -2.91 -0.02 4.23 16 27 C -0.08 -4.71 5.50 84.86 0.47 -4.25 16 28 N -0.97 -61.39 13.06 21.65 0.28 -61.10 16 29 Si 0.97 46.62 29.55 68.60 2.03 48.65 16 30 H -0.26 -11.49 7.11 99.48 0.71 -10.78 16 31 H -0.30 -14.16 7.11 99.48 0.71 -13.45 16 32 H -0.30 -14.35 7.11 99.48 0.71 -13.65 16 33 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16 34 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 35 H 0.09 0.65 8.14 -2.39 -0.02 0.63 16 36 H 0.11 0.86 8.14 -2.39 -0.02 0.85 16 37 H 0.10 0.80 5.02 -2.39 -0.01 0.79 16 38 H 0.14 3.92 8.06 -2.91 -0.02 3.90 16 39 H 0.23 0.21 8.06 -2.91 -0.02 0.18 16 40 H 0.05 1.94 7.87 -2.39 -0.02 1.93 16 41 H 0.08 2.49 7.95 -2.39 -0.02 2.47 16 42 H 0.03 1.09 8.00 -2.39 -0.02 1.07 16 43 H 0.03 1.17 8.14 -2.39 -0.02 1.15 16 44 H 0.37 20.51 7.67 -92.71 -0.71 19.80 16 45 H 0.25 15.30 8.31 -92.70 -0.77 14.53 16 Total: -1.00 -87.09 379.71 -0.51 -87.60 By element: Atomic # 1 Polarization: 20.82 SS G_CDS: -3.24 Total: 17.58 kcal Atomic # 6 Polarization: 5.71 SS G_CDS: 6.57 Total: 12.28 kcal Atomic # 7 Polarization: -136.00 SS G_CDS: -5.80 Total: -141.80 kcal Atomic # 8 Polarization: -24.24 SS G_CDS: -0.07 Total: -24.31 kcal Atomic # 14 Polarization: 46.62 SS G_CDS: 2.03 Total: 48.65 kcal Total: -87.09 -0.51 -87.60 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001590296148.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 220.025 kcal (2) G-P(sol) polarization free energy of solvation -87.086 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 132.939 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.512 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.598 kcal (6) G-S(sol) free energy of system = (1) + (5) 132.427 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds