Wall clock time and date at job start Wed Apr 1 2020 03:10:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08997 * 110.64222 * 2 1 4 4 C 1.54326 * 110.71973 * 236.85192 * 2 1 3 5 5 N 1.47022 * 107.27041 * 263.64871 * 4 2 1 6 6 C 1.34778 * 125.64773 * 181.02242 * 5 4 2 7 7 O 1.21703 * 120.00134 * 180.02562 * 6 5 4 8 8 C 1.46606 * 119.99712 * 0.03058 * 6 5 4 9 9 C 1.38036 * 126.00963 * 180.02562 * 8 6 5 10 10 C 1.39394 * 107.43048 * 179.70420 * 9 8 6 11 11 C 1.37751 * 107.65307 * 0.42052 * 10 9 8 12 12 C 1.47916 * 125.82075 * 179.84382 * 11 10 9 13 13 N 1.34200 * 126.70437 * 179.37748 * 12 11 10 14 14 N 1.28978 * 107.25051 * 179.86822 * 13 12 11 15 15 N 1.28718 * 108.99608 * 0.39605 * 14 13 12 16 16 H 0.97006 * 125.31580 * 179.70722 * 15 14 13 17 17 N 1.28867 * 109.36487 * 359.74962 * 15 14 13 18 18 N 1.36395 * 108.36071 * 359.57653 * 11 10 9 19 19 H 0.96992 * 125.71166 * 180.28488 * 18 11 10 20 20 C 1.47424 * 108.70450 * 1.29358 * 5 4 2 21 21 C 1.55135 * 104.72063 * 335.54633 * 20 5 4 22 22 H 1.08995 * 111.19183 * 279.19235 * 21 20 5 23 23 C 1.52997 * 110.93370 * 155.29261 * 21 20 5 24 24 N 1.46492 * 109.47517 * 72.96078 * 23 21 20 25 25 C 1.36935 * 120.00500 * 179.97438 * 24 23 21 26 26 H 1.08005 * 119.99923 * 359.97438 * 25 24 23 27 27 C 1.38814 * 120.00455 * 180.02562 * 25 24 23 28 28 N 1.31614 * 119.99890 * 180.02562 * 27 25 24 29 29 Si 1.86798 * 119.99719 * 359.97438 * 27 25 24 30 30 H 1.48495 * 109.47060 * 90.00373 * 29 27 25 31 31 H 1.48503 * 109.46880 * 210.00173 * 29 27 25 32 32 H 1.48496 * 109.47216 * 330.00363 * 29 27 25 33 33 H 1.09006 * 109.46975 * 181.69066 * 1 2 3 34 34 H 1.08999 * 109.47322 * 301.68834 * 1 2 3 35 35 H 1.08998 * 109.46977 * 61.69591 * 1 2 3 36 36 H 1.09007 * 109.87924 * 144.23596 * 4 2 1 37 37 H 1.08993 * 109.88337 * 23.07490 * 4 2 1 38 38 H 1.08000 * 126.28052 * 359.97062 * 9 8 6 39 39 H 1.08000 * 126.16836 * 180.26543 * 10 9 8 40 40 H 1.09000 * 110.36973 * 94.48255 * 20 5 4 41 41 H 1.09001 * 110.36264 * 216.80370 * 20 5 4 42 42 H 1.09003 * 109.46694 * 192.96406 * 23 21 20 43 43 H 1.09003 * 109.47553 * 312.95381 * 23 21 20 44 44 H 0.97007 * 120.00203 * 359.97438 * 24 23 21 45 45 H 0.97003 * 119.99530 * 180.02562 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9143 1.0200 0.0000 4 6 2.0760 -0.7893 -1.2085 5 7 2.3757 -2.1507 -0.7414 6 6 2.8903 -3.1437 -1.4934 7 8 3.0980 -4.2363 -0.9992 8 6 3.2000 -2.9077 -2.9068 9 6 3.7271 -3.8309 -3.7873 10 6 3.8583 -3.2009 -5.0239 11 6 3.4201 -1.9029 -4.8800 12 6 3.3877 -0.8771 -5.9452 13 7 2.9541 0.3875 -5.8280 14 7 3.0962 0.9489 -6.9804 15 7 3.5878 0.0924 -7.8060 16 1 3.7864 0.2638 -8.7399 17 7 3.7743 -1.0285 -7.1982 18 7 3.0155 -1.7266 -3.5895 19 1 2.6575 -0.9064 -3.2154 20 6 2.0140 -2.2517 0.6842 21 6 2.0828 -0.7947 1.2126 22 1 3.1096 -0.5043 1.4348 23 6 1.1874 -0.6155 2.4401 24 7 1.8006 -1.2792 3.5931 25 6 1.1758 -1.2517 4.8113 26 1 0.2310 -0.7403 4.9222 27 6 1.7572 -1.8802 5.9039 28 7 1.1564 -1.8541 7.0746 29 14 3.3916 -2.7641 5.7123 30 1 4.5019 -1.8155 5.9817 31 1 3.4600 -3.8925 6.6754 32 1 3.5122 -3.2871 4.3278 33 1 -0.3633 -1.0273 0.0303 34 1 -0.3634 0.5398 0.8744 35 1 -0.3633 0.4873 -0.9048 36 1 2.9852 -0.3163 -1.5800 37 1 1.3252 -0.8250 -1.9978 38 1 3.9858 -4.8547 -3.5609 39 1 4.2378 -3.6489 -5.9303 40 1 1.0051 -2.6498 0.7924 41 1 2.7297 -2.8808 1.2135 42 1 1.0704 0.4473 2.6524 43 1 0.2099 -1.0565 2.2444 44 1 2.6494 -1.7383 3.4937 45 1 1.5629 -2.2930 7.8383 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001590298103.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:10:28 Heat of formation + Delta-G solvation = 160.729450 kcal Electronic energy + Delta-G solvation = -29568.728128 eV Core-core repulsion = 25432.914986 eV Total energy + Delta-G solvation = -4135.813142 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.165 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -44.97393 -41.76789 -39.94982 -38.03878 -34.98510 -34.88129 -33.90707 -33.06238 -31.64836 -31.37349 -30.09624 -29.12011 -26.98884 -26.05036 -25.16626 -24.66700 -23.27380 -21.93715 -21.37197 -21.06194 -20.28297 -19.68879 -19.51868 -18.07886 -17.68320 -17.28375 -16.74219 -16.26023 -15.54686 -15.18717 -14.94954 -14.74082 -14.46418 -14.22317 -14.06147 -13.74940 -13.51168 -13.27270 -13.08198 -12.88680 -12.71328 -12.60483 -12.58615 -12.45818 -12.03630 -11.93287 -11.80364 -11.70220 -11.45479 -11.36050 -10.92407 -10.65087 -10.61791 -10.45869 -10.22634 -10.09045 -9.59002 -9.48063 -8.91067 -8.87871 -8.46062 -7.24645 -5.76832 -3.12992 0.35665 0.75468 1.62158 1.62633 2.41589 2.55242 2.76813 3.13948 3.23542 3.39974 3.43793 3.48200 3.75821 4.15334 4.26732 4.53859 4.60319 4.60870 4.69079 4.87215 4.89762 4.97021 5.02571 5.08004 5.21591 5.35919 5.53745 5.57575 5.58854 5.64141 5.66271 5.76272 5.83380 5.83912 5.94642 6.01415 6.07980 6.12069 6.23669 6.28181 6.43645 6.55616 6.66773 6.79825 7.28662 7.58804 7.93481 7.97930 8.41744 9.20285 9.92838 10.11524 11.41307 Molecular weight = 345.17amu Principal moments of inertia in cm(-1) A = 0.019487 B = 0.002307 C = 0.002134 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1436.508735 B =12132.708232 C =13120.372653 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.091 4.091 3 H 0.094 0.906 4 C 0.089 3.911 5 N -0.616 5.616 6 C 0.598 3.402 7 O -0.519 6.519 8 C -0.008 4.008 9 C -0.112 4.112 10 C -0.139 4.139 11 C 0.097 3.903 12 C 0.244 3.756 13 N -0.277 5.277 14 N -0.042 5.042 15 N -0.224 5.224 16 H 0.478 0.522 17 N -0.279 5.279 18 N -0.519 5.519 19 H 0.425 0.575 20 C 0.115 3.885 21 C -0.107 4.107 22 H 0.087 0.913 23 C 0.170 3.830 24 N -0.757 5.757 25 C -0.245 4.245 26 H 0.090 0.910 27 C 0.005 3.995 28 N -0.933 5.933 29 Si 0.883 3.117 30 H -0.285 1.285 31 H -0.290 1.290 32 H -0.275 1.275 33 H 0.060 0.940 34 H 0.072 0.928 35 H 0.055 0.945 36 H 0.068 0.932 37 H 0.070 0.930 38 H 0.160 0.840 39 H 0.156 0.844 40 H 0.078 0.922 41 H 0.083 0.917 42 H 0.034 0.966 43 H 0.034 0.966 44 H 0.361 0.639 45 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.537 4.512 -33.666 34.269 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.111 4.111 3 H 0.113 0.887 4 C -0.035 4.035 5 N -0.350 5.350 6 C 0.387 3.613 7 O -0.394 6.394 8 C -0.125 4.125 9 C -0.138 4.138 10 C -0.167 4.167 11 C -0.023 4.023 12 C -0.036 4.036 13 N -0.151 5.151 14 N -0.037 5.037 15 N -0.070 5.070 16 H 0.333 0.667 17 N -0.131 5.131 18 N -0.121 5.121 19 H 0.270 0.730 20 C -0.006 4.006 21 C -0.126 4.126 22 H 0.105 0.895 23 C 0.042 3.958 24 N -0.402 5.402 25 C -0.375 4.375 26 H 0.108 0.892 27 C -0.191 4.191 28 N -0.581 5.581 29 Si 0.713 3.287 30 H -0.211 1.211 31 H -0.217 1.217 32 H -0.202 1.202 33 H 0.079 0.921 34 H 0.091 0.909 35 H 0.074 0.926 36 H 0.086 0.914 37 H 0.088 0.912 38 H 0.177 0.823 39 H 0.173 0.827 40 H 0.097 0.903 41 H 0.102 0.898 42 H 0.051 0.949 43 H 0.052 0.948 44 H 0.193 0.807 45 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 4.290 4.669 -33.386 33.983 hybrid contribution 1.245 -0.419 -0.380 1.368 sum 5.535 4.251 -33.766 34.480 Atomic orbital electron populations 1.21876 0.93515 1.02712 1.02359 1.22156 0.97024 0.99184 0.92728 0.88736 1.22390 0.99492 0.83088 0.98511 1.48477 1.62852 1.11095 1.12531 1.16618 0.77675 0.83656 0.83346 1.90898 1.53476 1.23054 1.71984 1.20628 1.11768 0.86888 0.93207 1.21280 1.01676 0.99709 0.91132 1.21143 1.05261 0.91111 0.99217 1.16901 1.10361 0.92501 0.82504 1.22458 0.99478 0.91375 0.90258 1.76172 1.19391 1.05590 1.13962 1.78902 1.11517 1.18325 0.94945 1.47764 1.39886 1.04362 1.15023 0.66683 1.75004 1.22519 1.08645 1.06949 1.42618 1.48550 1.12944 1.07965 0.73049 1.22471 1.01734 0.97940 0.78473 1.22743 1.01327 0.93426 0.95130 0.89471 1.20613 0.94221 0.96479 0.84452 1.42736 1.24933 1.65651 1.06916 1.19019 1.04513 1.29393 0.84593 0.89188 1.24673 0.98385 1.00539 0.95456 1.69700 1.39600 1.48748 1.00024 0.86570 0.85048 0.79773 0.77299 1.21119 1.21671 1.20155 0.92127 0.90918 0.92643 0.91444 0.91188 0.82279 0.82674 0.90344 0.89810 0.94866 0.94783 0.80650 0.93040 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.45 7.91 37.16 0.29 -1.15 16 2 C -0.09 -0.92 3.46 -88.78 -0.31 -1.23 16 3 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 4 C 0.09 0.84 4.68 -3.06 -0.01 0.83 16 5 N -0.62 -7.92 3.32 -171.94 -0.57 -8.49 16 6 C 0.60 8.52 7.82 -12.88 -0.10 8.42 16 7 O -0.52 -9.25 17.13 5.19 0.09 -9.17 16 8 C -0.01 -0.09 6.88 -81.95 -0.56 -0.65 16 9 C -0.11 -1.15 10.60 -39.23 -0.42 -1.57 16 10 C -0.14 -1.23 10.79 -39.33 -0.42 -1.65 16 11 C 0.10 0.91 7.12 -82.05 -0.58 0.32 16 12 C 0.24 2.21 8.21 -156.25 -1.28 0.93 16 13 N -0.28 -2.63 12.54 32.08 0.40 -2.23 16 14 N -0.04 -0.32 13.46 60.35 0.81 0.49 16 15 N -0.22 -1.07 7.90 60.35 0.48 -0.59 16 16 H 0.48 -0.08 8.96 -340.33 -3.05 -3.13 16 17 N -0.28 -2.03 12.39 32.10 0.40 -1.64 16 18 N -0.52 -4.95 5.65 -5.80 -0.03 -4.98 16 19 H 0.43 3.51 4.88 -40.82 -0.20 3.31 16 20 C 0.12 1.71 6.01 -2.41 -0.01 1.70 16 21 C -0.11 -1.48 2.93 -88.35 -0.26 -1.73 16 22 H 0.09 1.23 8.14 -51.93 -0.42 0.81 16 23 C 0.17 3.00 4.54 -4.05 -0.02 2.98 16 24 N -0.76 -17.43 5.35 -59.91 -0.32 -17.75 16 25 C -0.25 -6.86 10.47 -15.06 -0.16 -7.01 16 26 H 0.09 2.68 8.06 -52.48 -0.42 2.26 16 27 C 0.01 0.16 5.50 -17.43 -0.10 0.06 16 28 N -0.93 -29.31 13.97 55.49 0.78 -28.53 16 29 Si 0.88 22.33 27.74 -169.99 -4.71 17.62 16 30 H -0.28 -7.13 7.11 56.52 0.40 -6.73 16 31 H -0.29 -7.47 7.11 56.52 0.40 -7.07 16 32 H -0.28 -6.62 6.52 56.52 0.37 -6.25 16 33 H 0.06 0.66 7.35 -51.93 -0.38 0.27 16 34 H 0.07 0.76 7.13 -51.93 -0.37 0.39 16 35 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 36 H 0.07 0.55 7.08 -51.92 -0.37 0.18 16 37 H 0.07 0.56 6.92 -51.93 -0.36 0.20 16 38 H 0.16 1.51 8.06 -52.49 -0.42 1.08 16 39 H 0.16 1.03 8.06 -52.49 -0.42 0.61 16 40 H 0.08 1.20 7.48 -51.93 -0.39 0.81 16 41 H 0.08 1.43 8.03 -51.93 -0.42 1.02 16 42 H 0.03 0.59 8.05 -51.93 -0.42 0.17 16 43 H 0.03 0.61 6.95 -51.93 -0.36 0.25 16 44 H 0.36 8.24 5.53 -40.82 -0.23 8.02 16 45 H 0.26 7.78 8.31 -40.82 -0.34 7.44 16 LS Contribution 372.42 15.07 5.61 5.61 Total: -1.00 -36.09 372.42 -9.26 -45.36 By element: Atomic # 1 Polarization: 12.31 SS G_CDS: -8.25 Total: 4.06 kcal Atomic # 6 Polarization: 4.18 SS G_CDS: -3.94 Total: 0.23 kcal Atomic # 7 Polarization: -65.66 SS G_CDS: 1.94 Total: -63.72 kcal Atomic # 8 Polarization: -9.25 SS G_CDS: 0.09 Total: -9.17 kcal Atomic # 14 Polarization: 22.33 SS G_CDS: -4.71 Total: 17.62 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -36.09 -9.26 -45.36 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001590298103.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 206.088 kcal (2) G-P(sol) polarization free energy of solvation -36.094 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 169.994 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.264 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.359 kcal (6) G-S(sol) free energy of system = (1) + (5) 160.729 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds