Wall clock time and date at job start Wed Apr 1 2020 02:55:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09000 * 109.70381 * 2 1 4 4 C 1.53191 * 109.58803 * 120.36263 * 2 1 3 5 5 C 1.53039 * 109.31440 * 65.14817 * 4 2 1 6 6 H 1.09008 * 109.44519 * 301.35411 * 5 4 2 7 7 N 1.46502 * 109.46027 * 181.39001 * 5 4 2 8 8 C 1.34775 * 119.99925 * 154.93385 * 7 5 4 9 9 O 1.21625 * 120.00058 * 359.97438 * 8 7 5 10 10 C 1.47308 * 119.99941 * 179.97438 * 8 7 5 11 11 C 1.37826 * 126.52645 * 359.97429 * 10 8 7 12 12 N 1.34782 * 108.25256 * 179.79082 * 11 10 8 13 13 H 0.96999 * 125.36930 * 180.24455 * 12 11 10 14 14 C 1.37310 * 109.27010 * 0.37566 * 12 11 10 15 15 C 1.48001 * 125.76455 * 179.88740 * 14 12 11 16 16 N 1.34174 * 126.69625 * 179.37746 * 15 14 12 17 17 N 1.28983 * 107.25182 * 179.89152 * 16 15 14 18 18 N 1.28725 * 108.98820 * 0.37317 * 17 16 15 19 19 H 0.96994 * 125.32093 * 179.78414 * 18 17 16 20 20 N 1.28864 * 109.35322 * 359.76178 * 18 17 16 21 21 C 1.35702 * 108.47141 * 359.62030 * 14 12 11 22 22 C 1.53037 * 109.54080 * 61.36544 * 5 4 2 23 23 C 1.53194 * 109.31151 * 298.63960 * 22 5 4 24 24 N 1.46924 * 108.77931 * 54.63383 * 23 22 5 25 25 C 1.36932 * 120.63436 * 126.41644 * 24 23 22 26 26 H 1.07999 * 120.00073 * 207.67547 * 25 24 23 27 27 C 1.38808 * 119.99907 * 27.66504 * 25 24 23 28 28 N 1.31619 * 120.00373 * 17.37207 * 27 25 24 29 29 Si 1.86805 * 119.99777 * 197.36843 * 27 25 24 30 30 H 1.48495 * 109.47375 * 0.02562 * 29 27 25 31 31 H 1.48502 * 109.47130 * 120.00578 * 29 27 25 32 32 H 1.48504 * 109.47109 * 240.00040 * 29 27 25 33 33 H 1.08996 * 109.47663 * 180.35279 * 1 2 3 34 34 H 1.09002 * 109.46758 * 300.35546 * 1 2 3 35 35 H 1.09000 * 109.46985 * 60.34730 * 1 2 3 36 36 H 1.09001 * 109.49734 * 305.19695 * 4 2 1 37 37 H 1.08997 * 109.50001 * 185.09912 * 4 2 1 38 38 H 0.96998 * 119.99692 * 334.92667 * 7 5 4 39 39 H 1.08003 * 125.87489 * 0.02562 * 11 10 8 40 40 H 1.08002 * 126.47062 * 180.26631 * 21 14 12 41 41 H 1.09006 * 109.49241 * 58.58542 * 22 5 4 42 42 H 1.08999 * 109.50016 * 178.68365 * 22 5 4 43 43 H 1.09004 * 109.58527 * 174.41983 * 23 22 5 44 44 H 1.09002 * 109.58491 * 294.69864 * 23 22 5 45 45 H 0.96996 * 119.99961 * 179.97438 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8975 1.0262 0.0000 4 6 2.0436 -0.7295 1.2453 5 6 1.6414 -2.2042 1.1699 6 1 0.5564 -2.2813 1.0990 7 7 2.1023 -2.8980 2.3752 8 6 1.4741 -4.0154 2.7912 9 8 0.5243 -4.4476 2.1664 10 6 1.9378 -4.7134 4.0027 11 6 2.9937 -4.3449 4.8083 12 7 3.0894 -5.2376 5.8135 13 1 3.7467 -5.2121 6.5264 14 6 2.1115 -6.1905 5.6680 15 6 1.8862 -7.3433 6.5684 16 7 0.9306 -8.2778 6.4507 17 7 1.0796 -9.1027 7.4310 18 7 2.0744 -8.7203 8.1528 19 1 2.3922 -9.1682 8.9523 20 7 2.5824 -7.6495 7.6468 21 6 1.3828 -5.8933 4.5625 22 6 2.2799 -2.8465 -0.0637 23 6 1.7690 -2.1409 -1.3239 24 7 2.0225 -0.6995 -1.1946 25 6 2.7043 -0.0208 -2.1691 26 1 3.2695 0.8640 -1.9161 27 6 2.6691 -0.4701 -3.4819 28 7 1.7364 -1.3170 -3.8630 29 14 3.9456 0.1271 -4.7080 30 1 4.8776 1.0667 -4.0344 31 1 4.7080 -1.0337 -5.2339 32 1 3.2664 0.8227 -5.8306 33 1 -0.3634 -1.0276 0.0063 34 1 -0.3633 0.5194 0.8868 35 1 -0.3633 0.5084 -0.8931 36 1 1.6076 -0.2786 2.1368 37 1 3.1297 -0.6506 1.2912 38 1 2.8596 -2.5531 2.8736 39 1 3.6322 -3.4862 4.6615 40 1 0.5392 -6.4494 4.1810 41 1 3.3639 -2.7475 -0.0055 42 1 2.0121 -3.9023 -0.1040 43 1 2.2943 -2.5274 -2.1974 44 1 0.6990 -2.3176 -1.4332 45 1 1.7116 -1.6307 -4.7805 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001603852075.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:55:01 Heat of formation + Delta-G solvation = 154.021198 kcal Electronic energy + Delta-G solvation = -29302.523811 eV Core-core repulsion = 25166.419778 eV Total energy + Delta-G solvation = -4136.104033 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.165 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -44.85992 -41.62023 -39.28301 -37.50814 -34.80014 -34.35945 -33.77637 -32.49758 -31.66557 -30.73435 -29.87368 -28.97420 -26.83859 -25.01597 -24.63373 -24.12558 -23.18398 -21.85707 -21.35114 -20.94173 -19.76012 -19.58272 -18.70186 -18.05643 -17.57604 -16.81999 -16.18140 -15.66465 -15.05476 -15.03657 -14.63480 -14.38214 -14.10755 -13.89455 -13.67748 -13.63464 -13.50893 -12.92699 -12.71128 -12.63630 -12.45083 -12.35936 -12.14941 -11.81091 -11.57036 -11.42207 -11.34121 -11.01983 -10.85646 -10.75101 -10.55364 -10.27524 -10.12164 -9.97281 -9.66591 -9.64945 -9.31236 -9.26427 -8.63400 -8.48155 -8.32164 -6.63576 -5.73646 -3.15806 0.52143 1.04890 1.67571 1.77808 2.48009 2.55309 3.26690 3.39980 3.47921 3.49678 3.62640 3.69806 3.93349 4.52564 4.62160 4.79750 4.81697 5.01770 5.12412 5.35489 5.44151 5.45409 5.65113 5.69861 5.80234 5.87369 5.91454 6.10492 6.14592 6.28549 6.32691 6.40648 6.44358 6.53016 6.55722 6.65284 6.75036 6.88923 6.89840 6.97846 7.05991 7.22970 7.46695 7.71860 7.76652 7.85066 7.88708 8.50456 8.60170 9.26426 9.90209 10.46961 11.34463 Molecular weight = 345.17amu Principal moments of inertia in cm(-1) A = 0.026058 B = 0.001914 C = 0.001896 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1074.280023 B =14625.500707 C =14765.595100 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.170 3.830 3 H 0.064 0.936 4 C -0.132 4.132 5 C 0.151 3.849 6 H 0.086 0.914 7 N -0.723 5.723 8 C 0.583 3.417 9 O -0.538 6.538 10 C -0.216 4.216 11 C 0.070 3.930 12 N -0.525 5.525 13 H 0.424 0.576 14 C 0.052 3.948 15 C 0.255 3.745 16 N -0.255 5.255 17 N -0.043 5.043 18 N -0.227 5.227 19 H 0.476 0.524 20 N -0.312 5.312 21 C -0.058 4.058 22 C -0.147 4.147 23 C 0.173 3.827 24 N -0.585 5.585 25 C -0.251 4.251 26 H 0.066 0.934 27 C 0.002 3.998 28 N -0.899 5.899 29 Si 0.900 3.100 30 H -0.278 1.278 31 H -0.290 1.290 32 H -0.291 1.291 33 H 0.050 0.950 34 H 0.036 0.964 35 H 0.054 0.946 36 H 0.055 0.945 37 H 0.061 0.939 38 H 0.390 0.610 39 H 0.184 0.816 40 H 0.161 0.839 41 H 0.053 0.947 42 H 0.053 0.947 43 H 0.088 0.912 44 H 0.022 0.978 45 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.934 -9.737 26.681 28.827 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.061 3.939 3 H 0.083 0.917 4 C -0.172 4.172 5 C 0.048 3.952 6 H 0.104 0.896 7 N -0.373 5.373 8 C 0.370 3.630 9 O -0.416 6.416 10 C -0.226 4.226 11 C -0.071 4.071 12 N -0.120 5.120 13 H 0.262 0.738 14 C -0.060 4.060 15 C -0.024 4.024 16 N -0.129 5.129 17 N -0.039 5.039 18 N -0.073 5.073 19 H 0.330 0.670 20 N -0.164 5.164 21 C -0.086 4.086 22 C -0.187 4.187 23 C 0.047 3.953 24 N -0.307 5.307 25 C -0.381 4.381 26 H 0.083 0.917 27 C -0.196 4.196 28 N -0.543 5.543 29 Si 0.730 3.270 30 H -0.203 1.203 31 H -0.216 1.216 32 H -0.218 1.218 33 H 0.069 0.931 34 H 0.055 0.945 35 H 0.073 0.927 36 H 0.074 0.926 37 H 0.080 0.920 38 H 0.223 0.777 39 H 0.201 0.799 40 H 0.178 0.822 41 H 0.072 0.928 42 H 0.072 0.928 43 H 0.106 0.894 44 H 0.040 0.960 45 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 3.998 -10.685 26.375 28.737 hybrid contribution 1.827 0.471 0.339 1.917 sum 5.825 -10.214 26.714 29.188 Atomic orbital electron populations 1.22306 0.98693 1.01204 1.00022 1.20440 0.91798 0.95037 0.86581 0.91748 1.22294 1.01033 0.94336 0.99531 1.21080 0.99906 0.91099 0.83119 0.89589 1.46146 1.34594 1.27243 1.29270 1.17324 0.82521 0.80161 0.83012 1.90804 1.28034 1.65821 1.56911 1.19808 1.01465 1.00973 1.00351 1.22453 0.99904 0.95589 0.89109 1.41482 1.26518 1.20540 1.23413 0.73816 1.16369 0.98237 0.92374 0.99027 1.22511 0.91519 0.96242 0.92172 1.76212 1.20111 1.01853 1.14700 1.78978 1.05175 1.19868 0.99848 1.47625 1.19955 1.16534 1.23145 0.66995 1.74928 1.24858 1.04333 1.12292 1.21044 0.99404 0.95672 0.92467 1.22565 1.00046 0.99287 0.96807 1.20747 0.97798 0.82823 0.93965 1.44177 1.63787 1.03498 1.19191 1.19189 1.21942 1.10166 0.86762 0.91670 1.25043 0.97741 1.00072 0.96793 1.70046 1.31735 1.35753 1.16797 0.86268 0.81392 0.78001 0.81351 1.20340 1.21648 1.21831 0.93083 0.94526 0.92671 0.92620 0.91980 0.77653 0.79860 0.82181 0.92782 0.92791 0.89368 0.96035 0.93686 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.12 9.03 37.16 0.34 -2.79 16 2 C 0.17 3.38 3.29 -67.60 -0.22 3.16 16 3 H 0.06 1.27 7.93 -51.93 -0.41 0.86 16 4 C -0.13 -2.13 5.02 -26.61 -0.13 -2.27 16 5 C 0.15 2.58 2.21 -67.89 -0.15 2.43 16 6 H 0.09 1.68 5.92 -51.92 -0.31 1.37 16 7 N -0.72 -9.85 5.07 -54.88 -0.28 -10.13 16 8 C 0.58 8.89 7.77 -12.57 -0.10 8.79 16 9 O -0.54 -10.66 16.59 5.26 0.09 -10.58 16 10 C -0.22 -2.53 6.14 -104.96 -0.64 -3.17 16 11 C 0.07 0.52 11.44 -16.41 -0.19 0.33 16 12 N -0.53 -3.58 6.01 -9.19 -0.06 -3.63 16 13 H 0.42 1.66 8.96 -40.82 -0.37 1.29 16 14 C 0.05 0.51 7.08 -82.32 -0.58 -0.07 16 15 C 0.26 2.53 8.20 -156.26 -1.28 1.25 16 16 N -0.26 -2.84 12.52 32.09 0.40 -2.44 16 17 N -0.04 -0.38 13.46 60.35 0.81 0.43 16 18 N -0.23 -1.26 7.90 60.35 0.48 -0.78 16 19 H 0.48 0.27 8.96 -340.35 -3.05 -2.79 16 20 N -0.31 -2.38 12.41 32.11 0.40 -1.98 16 21 C -0.06 -0.69 10.59 -39.09 -0.41 -1.10 16 22 C -0.15 -2.92 5.65 -26.61 -0.15 -3.07 16 23 C 0.17 4.16 4.89 -3.71 -0.02 4.15 16 24 N -0.58 -14.16 2.70 -164.77 -0.45 -14.61 16 25 C -0.25 -6.72 9.58 -15.06 -0.14 -6.87 16 26 H 0.07 1.71 7.89 -52.49 -0.41 1.30 16 27 C 0.00 0.06 4.91 -17.43 -0.09 -0.02 16 28 N -0.90 -26.11 11.19 55.49 0.62 -25.48 16 29 Si 0.90 21.56 29.59 -169.99 -5.03 16.54 16 30 H -0.28 -6.49 7.11 56.52 0.40 -6.08 16 31 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 32 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 33 H 0.05 1.02 5.73 -51.93 -0.30 0.73 16 34 H 0.04 0.59 8.14 -51.93 -0.42 0.16 16 35 H 0.05 1.16 8.14 -51.93 -0.42 0.73 16 36 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 37 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 38 H 0.39 3.88 7.52 -40.82 -0.31 3.57 16 39 H 0.18 0.67 7.44 -52.48 -0.39 0.28 16 40 H 0.16 2.03 8.06 -52.49 -0.42 1.60 16 41 H 0.05 1.06 8.14 -51.93 -0.42 0.63 16 42 H 0.05 1.10 8.14 -51.93 -0.42 0.68 16 43 H 0.09 2.39 6.04 -51.93 -0.31 2.08 16 44 H 0.02 0.56 7.51 -51.93 -0.39 0.17 16 45 H 0.25 7.12 8.31 -40.82 -0.34 6.78 16 LS Contribution 373.68 15.07 5.63 5.63 Total: -1.00 -35.78 373.68 -9.50 -45.27 By element: Atomic # 1 Polarization: 9.34 SS G_CDS: -8.34 Total: 1.00 kcal Atomic # 6 Polarization: 4.53 SS G_CDS: -3.78 Total: 0.76 kcal Atomic # 7 Polarization: -60.55 SS G_CDS: 1.93 Total: -58.62 kcal Atomic # 8 Polarization: -10.66 SS G_CDS: 0.09 Total: -10.58 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.03 Total: 16.54 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -35.78 -9.50 -45.27 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001603852075.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 199.295 kcal (2) G-P(sol) polarization free energy of solvation -35.775 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 163.520 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.499 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.274 kcal (6) G-S(sol) free energy of system = (1) + (5) 154.021 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds