Wall clock time and date at job start Wed Apr 1 2020 02:55:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09000 * 109.70381 * 2 1 4 4 C 1.53191 * 109.58803 * 120.36263 * 2 1 3 5 5 C 1.53039 * 109.31440 * 65.14817 * 4 2 1 6 6 H 1.09008 * 109.44519 * 301.35411 * 5 4 2 7 7 N 1.46502 * 109.46027 * 181.39001 * 5 4 2 8 8 C 1.34775 * 119.99925 * 154.93385 * 7 5 4 9 9 O 1.21625 * 120.00058 * 359.97438 * 8 7 5 10 10 C 1.47308 * 119.99941 * 179.97438 * 8 7 5 11 11 C 1.37826 * 126.52645 * 359.97429 * 10 8 7 12 12 N 1.34782 * 108.25256 * 179.79082 * 11 10 8 13 13 H 0.96999 * 125.36930 * 180.24455 * 12 11 10 14 14 C 1.37310 * 109.27010 * 0.37566 * 12 11 10 15 15 C 1.48001 * 125.76455 * 179.88740 * 14 12 11 16 16 N 1.34174 * 126.69625 * 179.37746 * 15 14 12 17 17 N 1.28983 * 107.25182 * 179.89152 * 16 15 14 18 18 N 1.28725 * 108.98820 * 0.37317 * 17 16 15 19 19 H 0.96994 * 125.32093 * 179.78414 * 18 17 16 20 20 N 1.28864 * 109.35322 * 359.76178 * 18 17 16 21 21 C 1.35702 * 108.47141 * 359.62030 * 14 12 11 22 22 C 1.53037 * 109.54080 * 61.36544 * 5 4 2 23 23 C 1.53194 * 109.31151 * 298.63960 * 22 5 4 24 24 N 1.46924 * 108.77931 * 54.63383 * 23 22 5 25 25 C 1.36932 * 120.63436 * 126.41644 * 24 23 22 26 26 H 1.07999 * 120.00073 * 207.67547 * 25 24 23 27 27 C 1.38808 * 119.99907 * 27.66504 * 25 24 23 28 28 N 1.31619 * 120.00373 * 17.37207 * 27 25 24 29 29 Si 1.86805 * 119.99777 * 197.36843 * 27 25 24 30 30 H 1.48495 * 109.47375 * 0.02562 * 29 27 25 31 31 H 1.48502 * 109.47130 * 120.00578 * 29 27 25 32 32 H 1.48504 * 109.47109 * 240.00040 * 29 27 25 33 33 H 1.08996 * 109.47663 * 180.35279 * 1 2 3 34 34 H 1.09002 * 109.46758 * 300.35546 * 1 2 3 35 35 H 1.09000 * 109.46985 * 60.34730 * 1 2 3 36 36 H 1.09001 * 109.49734 * 305.19695 * 4 2 1 37 37 H 1.08997 * 109.50001 * 185.09912 * 4 2 1 38 38 H 0.96998 * 119.99692 * 334.92667 * 7 5 4 39 39 H 1.08003 * 125.87489 * 0.02562 * 11 10 8 40 40 H 1.08002 * 126.47062 * 180.26631 * 21 14 12 41 41 H 1.09006 * 109.49241 * 58.58542 * 22 5 4 42 42 H 1.08999 * 109.50016 * 178.68365 * 22 5 4 43 43 H 1.09004 * 109.58527 * 174.41983 * 23 22 5 44 44 H 1.09002 * 109.58491 * 294.69864 * 23 22 5 45 45 H 0.96996 * 119.99961 * 179.97438 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8975 1.0262 0.0000 4 6 2.0436 -0.7295 1.2453 5 6 1.6414 -2.2042 1.1699 6 1 0.5564 -2.2813 1.0990 7 7 2.1023 -2.8980 2.3752 8 6 1.4741 -4.0154 2.7912 9 8 0.5243 -4.4476 2.1664 10 6 1.9378 -4.7134 4.0027 11 6 2.9937 -4.3449 4.8083 12 7 3.0894 -5.2376 5.8135 13 1 3.7467 -5.2121 6.5264 14 6 2.1115 -6.1905 5.6680 15 6 1.8862 -7.3433 6.5684 16 7 0.9306 -8.2778 6.4507 17 7 1.0796 -9.1027 7.4310 18 7 2.0744 -8.7203 8.1528 19 1 2.3922 -9.1682 8.9523 20 7 2.5824 -7.6495 7.6468 21 6 1.3828 -5.8933 4.5625 22 6 2.2799 -2.8465 -0.0637 23 6 1.7690 -2.1409 -1.3239 24 7 2.0225 -0.6995 -1.1946 25 6 2.7043 -0.0208 -2.1691 26 1 3.2695 0.8640 -1.9161 27 6 2.6691 -0.4701 -3.4819 28 7 1.7364 -1.3170 -3.8630 29 14 3.9456 0.1271 -4.7080 30 1 4.8776 1.0667 -4.0344 31 1 4.7080 -1.0337 -5.2339 32 1 3.2664 0.8227 -5.8306 33 1 -0.3634 -1.0276 0.0063 34 1 -0.3633 0.5194 0.8868 35 1 -0.3633 0.5084 -0.8931 36 1 1.6076 -0.2786 2.1368 37 1 3.1297 -0.6506 1.2912 38 1 2.8596 -2.5531 2.8736 39 1 3.6322 -3.4862 4.6615 40 1 0.5392 -6.4494 4.1810 41 1 3.3639 -2.7475 -0.0055 42 1 2.0121 -3.9023 -0.1040 43 1 2.2943 -2.5274 -2.1974 44 1 0.6990 -2.3176 -1.4332 45 1 1.7116 -1.6307 -4.7805 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001603852075.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:55:00 Heat of formation + Delta-G solvation = 126.252134 kcal Electronic energy + Delta-G solvation = -29303.727968 eV Core-core repulsion = 25166.419778 eV Total energy + Delta-G solvation = -4137.308190 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.165 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -45.50579 -42.37093 -40.60072 -39.04048 -35.90846 -35.45629 -34.48795 -34.20769 -32.69408 -32.19490 -31.32683 -30.06307 -28.41895 -26.22654 -25.66574 -25.12300 -24.32953 -23.57181 -22.67074 -21.75877 -20.83579 -20.31160 -19.86522 -19.24489 -18.52024 -18.21362 -17.31085 -17.17170 -16.44177 -16.02614 -15.71861 -15.54529 -15.44176 -15.11647 -15.07806 -14.89002 -14.60787 -14.35055 -14.13728 -14.03442 -13.79105 -13.35166 -13.30959 -13.10702 -12.85340 -12.62738 -12.49205 -12.48145 -12.25201 -12.21231 -12.06532 -11.97345 -11.92096 -11.69389 -11.40925 -11.09759 -10.80342 -10.51436 -10.16420 -9.81804 -9.19512 -8.63442 -7.80738 -5.25345 -0.10858 0.34622 0.81915 1.33958 1.49239 1.51272 1.61480 1.77231 1.86823 2.31589 2.55736 2.63621 2.77323 3.28792 3.34858 3.68555 3.89021 3.97814 4.08450 4.17270 4.20336 4.34036 4.37783 4.39638 4.53782 4.60251 4.76667 4.79338 4.85659 4.91813 4.99555 5.05534 5.19195 5.24319 5.25538 5.41017 5.46705 5.52338 5.56368 5.59023 5.66468 5.71703 5.74052 5.83305 6.40802 6.45941 6.82841 7.05985 7.20710 7.49799 7.93557 8.45819 9.25905 Molecular weight = 345.17amu Principal moments of inertia in cm(-1) A = 0.026058 B = 0.001914 C = 0.001896 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1074.280023 B =14625.500707 C =14765.595100 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.159 3.841 3 H 0.072 0.928 4 C -0.116 4.116 5 C 0.163 3.837 6 H 0.059 0.941 7 N -0.704 5.704 8 C 0.582 3.418 9 O -0.597 6.597 10 C -0.253 4.253 11 C 0.116 3.884 12 N -0.504 5.504 13 H 0.443 0.557 14 C 0.053 3.947 15 C 0.241 3.759 16 N -0.294 5.294 17 N -0.053 5.053 18 N -0.195 5.195 19 H 0.496 0.504 20 N -0.297 5.297 21 C -0.084 4.084 22 C -0.132 4.132 23 C 0.184 3.816 24 N -0.598 5.598 25 C -0.252 4.252 26 H 0.074 0.926 27 C -0.057 4.057 28 N -0.938 5.938 29 Si 0.965 3.035 30 H -0.261 1.261 31 H -0.295 1.295 32 H -0.297 1.297 33 H 0.032 0.968 34 H 0.075 0.925 35 H 0.026 0.974 36 H 0.093 0.907 37 H 0.079 0.921 38 H 0.415 0.585 39 H 0.235 0.765 40 H 0.135 0.865 41 H 0.063 0.937 42 H 0.039 0.961 43 H 0.051 0.949 44 H -0.013 1.013 45 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.066 -8.307 30.581 32.700 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.052 3.948 3 H 0.090 0.910 4 C -0.155 4.155 5 C 0.058 3.942 6 H 0.077 0.923 7 N -0.355 5.355 8 C 0.372 3.628 9 O -0.479 6.479 10 C -0.263 4.263 11 C -0.026 4.026 12 N -0.099 5.099 13 H 0.285 0.715 14 C -0.059 4.059 15 C -0.039 4.039 16 N -0.166 5.166 17 N -0.048 5.048 18 N -0.047 5.047 19 H 0.355 0.645 20 N -0.151 5.151 21 C -0.112 4.112 22 C -0.172 4.172 23 C 0.057 3.943 24 N -0.321 5.321 25 C -0.382 4.382 26 H 0.092 0.908 27 C -0.252 4.252 28 N -0.585 5.585 29 Si 0.793 3.207 30 H -0.185 1.185 31 H -0.222 1.222 32 H -0.225 1.225 33 H 0.051 0.949 34 H 0.094 0.906 35 H 0.045 0.955 36 H 0.112 0.888 37 H 0.097 0.903 38 H 0.252 0.748 39 H 0.251 0.749 40 H 0.153 0.847 41 H 0.082 0.918 42 H 0.058 0.942 43 H 0.070 0.930 44 H 0.005 0.995 45 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 7.185 -9.246 30.383 32.562 hybrid contribution 0.850 -0.019 -0.726 1.117 sum 8.034 -9.266 29.658 32.093 Atomic orbital electron populations 1.22203 0.98492 1.00214 1.00469 1.20743 0.92000 0.95622 0.86450 0.90994 1.22122 1.02130 0.92571 0.98705 1.20676 0.98154 0.92136 0.83249 0.92304 1.45756 1.35117 1.26615 1.28037 1.17824 0.81567 0.79933 0.83468 1.90779 1.30782 1.67367 1.58986 1.19464 1.04335 1.01816 1.00641 1.23019 0.97565 0.95347 0.86701 1.41470 1.25730 1.19207 1.23533 0.71520 1.16200 0.98535 0.92880 0.98322 1.22559 0.91889 0.96474 0.92978 1.76201 1.21475 1.02911 1.16007 1.78927 1.06089 1.19805 1.00003 1.47721 1.18503 1.15520 1.22930 0.64460 1.74889 1.24215 1.04554 1.11409 1.20936 0.99836 0.96490 0.93960 1.22320 1.00452 0.98088 0.96343 1.20409 0.95301 0.83801 0.94774 1.44388 1.64085 1.03522 1.20076 1.19584 1.21415 1.09909 0.87292 0.90792 1.25821 0.99627 1.00932 0.98781 1.70224 1.33808 1.37749 1.16688 0.85243 0.79143 0.77378 0.78896 1.18488 1.22207 1.22488 0.94863 0.90645 0.95484 0.88819 0.90283 0.74804 0.74924 0.84696 0.91784 0.94211 0.93047 0.99478 0.94446 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.88 9.03 71.98 0.65 -5.23 16 2 C 0.16 6.09 3.29 44.97 0.15 6.23 16 3 H 0.07 2.66 7.93 -2.39 -0.02 2.64 16 4 C -0.12 -3.35 5.02 30.67 0.15 -3.19 16 5 C 0.16 5.38 2.21 45.02 0.10 5.48 16 6 H 0.06 2.33 5.92 -2.38 -0.01 2.32 16 7 N -0.70 -17.47 5.07 -445.77 -2.26 -19.73 16 8 C 0.58 17.48 7.77 86.63 0.67 18.15 16 9 O -0.60 -24.86 16.59 -4.11 -0.07 -24.93 16 10 C -0.25 -5.55 6.14 -20.08 -0.12 -5.67 16 11 C 0.12 1.20 11.44 84.14 0.96 2.17 16 12 N -0.50 -4.92 6.01 -182.99 -1.10 -6.02 16 13 H 0.44 1.29 8.96 -92.71 -0.83 0.46 16 14 C 0.05 0.97 7.08 40.29 0.29 1.25 16 15 C 0.24 4.50 8.20 137.15 1.12 5.63 16 16 N -0.29 -6.53 12.52 -52.38 -0.66 -7.19 16 17 N -0.05 -0.88 13.46 37.02 0.50 -0.39 16 18 N -0.20 -1.75 7.90 37.02 0.29 -1.46 16 19 H 0.50 -0.76 8.96 -347.52 -3.11 -3.88 16 20 N -0.30 -3.82 12.41 -52.33 -0.65 -4.47 16 21 C -0.08 -2.03 10.59 22.59 0.24 -1.79 16 22 C -0.13 -5.31 5.65 30.67 0.17 -5.13 16 23 C 0.18 9.28 4.89 86.36 0.42 9.70 16 24 N -0.60 -29.24 2.70 -675.21 -1.82 -31.06 16 25 C -0.25 -13.51 9.58 84.03 0.81 -12.71 16 26 H 0.07 3.79 7.89 -2.91 -0.02 3.76 16 27 C -0.06 -3.19 4.91 84.86 0.42 -2.77 16 28 N -0.94 -57.01 11.19 21.65 0.24 -56.77 16 29 Si 0.96 45.04 29.59 68.60 2.03 47.07 16 30 H -0.26 -11.30 7.11 99.48 0.71 -10.59 16 31 H -0.29 -13.89 7.11 99.48 0.71 -13.18 16 32 H -0.30 -14.07 7.11 99.48 0.71 -13.36 16 33 H 0.03 1.36 5.73 -2.39 -0.01 1.35 16 34 H 0.07 2.25 8.14 -2.39 -0.02 2.23 16 35 H 0.03 1.14 8.14 -2.39 -0.02 1.12 16 36 H 0.09 2.09 8.14 -2.39 -0.02 2.07 16 37 H 0.08 2.08 8.14 -2.39 -0.02 2.06 16 38 H 0.41 6.21 7.52 -92.71 -0.70 5.52 16 39 H 0.23 0.01 7.44 -2.91 -0.02 -0.01 16 40 H 0.14 3.82 8.06 -2.91 -0.02 3.80 16 41 H 0.06 2.44 8.14 -2.38 -0.02 2.42 16 42 H 0.04 1.69 8.14 -2.39 -0.02 1.67 16 43 H 0.05 2.95 6.04 -2.38 -0.01 2.94 16 44 H -0.01 -0.72 7.51 -2.39 -0.02 -0.74 16 45 H 0.25 14.60 8.31 -92.71 -0.77 13.83 16 Total: -1.00 -85.40 373.68 -1.02 -86.42 By element: Atomic # 1 Polarization: 9.98 SS G_CDS: -3.56 Total: 6.42 kcal Atomic # 6 Polarization: 6.08 SS G_CDS: 6.03 Total: 12.11 kcal Atomic # 7 Polarization: -121.64 SS G_CDS: -5.46 Total: -127.09 kcal Atomic # 8 Polarization: -24.86 SS G_CDS: -0.07 Total: -24.93 kcal Atomic # 14 Polarization: 45.04 SS G_CDS: 2.03 Total: 47.07 kcal Total: -85.40 -1.02 -86.42 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001603852075.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 212.672 kcal (2) G-P(sol) polarization free energy of solvation -85.401 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 127.272 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.019 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.420 kcal (6) G-S(sol) free energy of system = (1) + (5) 126.252 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds