Wall clock time and date at job start Wed Apr 1 2020 02:55:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09001 * 109.58923 * 2 1 4 4 C 1.53195 * 109.70330 * 120.35991 * 2 1 3 5 5 C 1.53043 * 109.31320 * 174.49146 * 4 2 1 6 6 H 1.09000 * 109.45881 * 58.65285 * 5 4 2 7 7 N 1.46495 * 109.45824 * 178.61170 * 5 4 2 8 8 C 1.34783 * 120.00021 * 205.06818 * 7 5 4 9 9 O 1.21629 * 119.99639 * 359.97438 * 8 7 5 10 10 C 1.47311 * 120.00190 * 180.02562 * 8 7 5 11 11 C 1.37823 * 126.52376 * 0.02562 * 10 8 7 12 12 N 1.34787 * 108.25004 * 180.02562 * 11 10 8 13 13 H 0.96997 * 125.36561 * 180.02562 * 12 11 10 14 14 C 1.37315 * 109.26862 * 0.02562 * 12 11 10 15 15 C 1.48006 * 125.76201 * 180.02562 * 14 12 11 16 16 N 1.34169 * 126.69298 * 180.02562 * 15 14 12 17 17 N 1.28984 * 107.25280 * 179.97438 * 16 15 14 18 18 N 1.28727 * 108.98567 * 0.02562 * 17 16 15 19 19 H 0.96999 * 125.32378 * 180.02562 * 18 17 16 20 20 N 1.28875 * 109.35330 * 359.75064 * 18 17 16 21 21 C 1.35705 * 108.47054 * 359.71496 * 14 12 11 22 22 C 1.53037 * 109.53665 * 298.63267 * 5 4 2 23 23 C 1.53189 * 109.31498 * 61.36629 * 22 5 4 24 24 N 1.46931 * 108.77631 * 305.36303 * 23 22 5 25 25 C 1.36930 * 120.63407 * 233.58606 * 24 23 22 26 26 H 1.08005 * 120.00091 * 150.16987 * 25 24 23 27 27 C 1.38816 * 120.00068 * 330.17123 * 25 24 23 28 28 N 1.31612 * 119.99500 * 344.50211 * 27 25 24 29 29 Si 1.86794 * 120.00031 * 164.50387 * 27 25 24 30 30 H 1.48504 * 109.47187 * 59.99600 * 29 27 25 31 31 H 1.48497 * 109.47306 * 179.97438 * 29 27 25 32 32 H 1.48497 * 109.47353 * 299.99978 * 29 27 25 33 33 H 1.08997 * 109.47474 * 180.28355 * 1 2 3 34 34 H 1.09000 * 109.46958 * 300.28148 * 1 2 3 35 35 H 1.08994 * 109.47235 * 60.28299 * 1 2 3 36 36 H 1.09008 * 109.49591 * 294.44121 * 4 2 1 37 37 H 1.08997 * 109.49954 * 54.53918 * 4 2 1 38 38 H 0.97000 * 120.00524 * 25.06806 * 7 5 4 39 39 H 1.07997 * 125.88036 * 0.04368 * 11 10 8 40 40 H 1.08006 * 126.46479 * 180.28145 * 21 14 12 41 41 H 1.09004 * 109.49960 * 301.41435 * 22 5 4 42 42 H 1.08999 * 109.49696 * 181.31816 * 22 5 4 43 43 H 1.08999 * 109.58783 * 65.15040 * 23 22 5 44 44 H 1.08999 * 109.58780 * 185.43804 * 23 22 5 45 45 H 0.97002 * 119.99590 * 180.02562 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8954 1.0269 0.0000 4 6 2.0465 -0.7290 1.2445 5 6 3.5706 -0.8445 1.1674 6 1 4.0071 0.1518 1.0965 7 7 4.0710 -1.5117 2.3717 8 6 5.3349 -1.2947 2.7865 9 8 6.0601 -0.5452 2.1606 10 6 5.8383 -1.9661 3.9972 11 6 5.1380 -2.8377 4.8031 12 7 5.9494 -3.2307 5.8051 13 1 5.7072 -3.8453 6.5153 14 6 7.1728 -2.6238 5.6620 15 6 8.3354 -2.7984 6.5611 16 7 9.5376 -2.2152 6.4395 17 7 10.2645 -2.6287 7.4215 18 7 9.5716 -3.4386 8.1434 19 1 9.8878 -3.8882 8.9426 20 7 8.3903 -3.5542 7.6414 21 6 7.1380 -1.8423 4.5531 22 6 3.9601 -1.6609 -0.0671 23 6 3.4654 -0.9426 -1.3264 24 7 2.0225 -0.6981 -1.1954 25 6 1.1534 -1.1125 -2.1690 26 1 0.1402 -1.3818 -1.9094 27 6 1.5746 -1.1866 -3.4897 28 7 2.6837 -0.5834 -3.8614 29 14 0.5671 -2.1422 -4.7391 30 1 -0.7946 -1.5566 -4.8290 31 1 1.2262 -2.0676 -6.0677 32 1 0.4683 -3.5616 -4.3140 33 1 -0.3634 -1.0276 0.0051 34 1 -0.3633 0.5182 0.8875 35 1 -0.3633 0.5094 -0.8925 36 1 1.7688 -0.1673 2.1365 37 1 1.6079 -1.7258 1.2905 38 1 3.4928 -2.1098 2.8706 39 1 4.1152 -3.1521 4.6568 40 1 7.9462 -1.2383 4.1678 41 1 3.5036 -2.6489 -0.0088 42 1 5.0446 -1.7626 -0.1086 43 1 3.9886 0.0075 -1.4346 44 1 3.6546 -1.5655 -2.2006 45 1 2.9778 -0.6349 -4.7843 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001603852078.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:55:12 Heat of formation + Delta-G solvation = 154.008426 kcal Electronic energy + Delta-G solvation = -29178.772208 eV Core-core repulsion = 25042.667621 eV Total energy + Delta-G solvation = -4136.104587 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.165 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -44.85925 -41.62027 -39.23195 -37.43439 -34.79989 -34.44664 -33.77961 -32.37937 -31.78486 -31.11600 -29.86446 -28.95871 -26.32264 -25.05711 -24.91935 -24.24049 -23.15768 -21.83847 -21.10666 -20.46795 -19.79742 -19.62868 -19.02583 -18.43229 -17.57581 -16.49116 -16.09034 -15.57653 -15.05523 -15.03634 -14.95085 -14.38385 -14.12177 -13.89014 -13.81563 -13.59275 -13.31636 -13.21749 -12.72683 -12.71189 -12.58430 -12.48092 -11.81130 -11.57083 -11.54460 -11.42292 -11.16179 -11.03746 -10.87357 -10.82664 -10.60913 -10.27560 -10.07217 -9.98033 -9.76196 -9.65682 -9.31597 -9.28681 -8.62424 -8.47496 -8.33421 -6.57225 -5.71586 -3.15757 0.52082 1.04845 1.67431 1.77762 2.47874 2.55273 3.26445 3.41386 3.47798 3.48167 3.62021 3.69557 3.93329 4.53646 4.62076 4.79674 4.81582 5.01716 5.12446 5.33924 5.44646 5.46640 5.64581 5.67945 5.79952 5.85251 5.91389 6.08439 6.21895 6.28390 6.33678 6.36911 6.44256 6.48267 6.53136 6.59187 6.73454 6.88886 6.90096 7.00596 7.10590 7.15539 7.46081 7.71812 7.76130 7.87450 7.88256 8.52979 8.59858 9.28259 9.92003 10.49798 11.37012 Molecular weight = 345.17amu Principal moments of inertia in cm(-1) A = 0.026481 B = 0.001896 C = 0.001853 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1057.091095 B =14764.707112 C =15106.521013 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.171 3.829 3 H 0.027 0.973 4 C -0.133 4.133 5 C 0.152 3.848 6 H 0.082 0.918 7 N -0.723 5.723 8 C 0.583 3.417 9 O -0.538 6.538 10 C -0.216 4.216 11 C 0.070 3.930 12 N -0.525 5.525 13 H 0.424 0.576 14 C 0.052 3.948 15 C 0.255 3.745 16 N -0.255 5.255 17 N -0.043 5.043 18 N -0.227 5.227 19 H 0.476 0.524 20 N -0.312 5.312 21 C -0.058 4.058 22 C -0.147 4.147 23 C 0.175 3.825 24 N -0.587 5.587 25 C -0.251 4.251 26 H 0.068 0.932 27 C 0.003 3.997 28 N -0.901 5.901 29 Si 0.900 3.100 30 H -0.283 1.283 31 H -0.292 1.292 32 H -0.285 1.285 33 H 0.052 0.948 34 H 0.037 0.963 35 H 0.062 0.938 36 H 0.054 0.946 37 H 0.062 0.938 38 H 0.391 0.609 39 H 0.184 0.816 40 H 0.161 0.839 41 H 0.054 0.946 42 H 0.054 0.946 43 H 0.021 0.979 44 H 0.087 0.913 45 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.071 -8.298 26.601 28.748 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.063 3.937 3 H 0.044 0.956 4 C -0.173 4.173 5 C 0.049 3.951 6 H 0.100 0.900 7 N -0.372 5.372 8 C 0.370 3.630 9 O -0.415 6.415 10 C -0.226 4.226 11 C -0.070 4.070 12 N -0.120 5.120 13 H 0.262 0.738 14 C -0.060 4.060 15 C -0.024 4.024 16 N -0.129 5.129 17 N -0.039 5.039 18 N -0.073 5.073 19 H 0.330 0.670 20 N -0.164 5.164 21 C -0.086 4.086 22 C -0.187 4.187 23 C 0.049 3.951 24 N -0.311 5.311 25 C -0.381 4.381 26 H 0.086 0.914 27 C -0.196 4.196 28 N -0.545 5.545 29 Si 0.730 3.270 30 H -0.210 1.210 31 H -0.217 1.217 32 H -0.211 1.211 33 H 0.071 0.929 34 H 0.056 0.944 35 H 0.081 0.919 36 H 0.073 0.927 37 H 0.081 0.919 38 H 0.224 0.776 39 H 0.201 0.799 40 H 0.178 0.822 41 H 0.072 0.928 42 H 0.072 0.928 43 H 0.039 0.961 44 H 0.105 0.895 45 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 8.285 -7.711 26.290 28.623 hybrid contribution -1.071 -1.596 0.348 1.953 sum 7.214 -9.307 26.639 29.126 Atomic orbital electron populations 1.21786 0.95856 1.01294 1.00308 1.20360 0.92974 0.93646 0.86709 0.95559 1.22372 0.93847 1.01508 0.99596 1.21015 0.94003 0.96849 0.83209 0.89981 1.46136 1.13040 1.48756 1.29292 1.17331 0.81752 0.80925 0.83012 1.90807 1.56496 1.37416 1.56828 1.19804 0.95895 1.06539 1.00359 1.22451 0.96777 0.98592 0.89228 1.41485 1.09846 1.36949 1.23678 0.73814 1.16373 0.83921 1.06723 0.98989 1.22508 0.93466 0.94389 0.92078 1.76211 1.01180 1.20866 1.14621 1.78979 1.20873 1.04205 0.99801 1.47631 1.05747 1.30631 1.23261 0.66994 1.74931 1.04544 1.24555 1.12377 1.21045 0.97111 0.98062 0.92362 1.22565 0.99855 0.99491 0.96778 1.20730 0.83183 0.97321 0.93893 1.44149 1.02934 1.64977 1.18993 1.19096 0.95219 1.37686 0.86090 0.91401 1.25112 0.97918 0.99575 0.97016 1.70014 1.24155 1.43619 1.16733 0.86414 0.79595 0.80189 0.80780 1.20974 1.21745 1.21144 0.92857 0.94366 0.91880 0.92718 0.91907 0.77627 0.79863 0.82174 0.92771 0.92758 0.96127 0.89477 0.93618 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.44 7.96 37.16 0.30 -2.15 16 2 C 0.17 3.44 3.49 -67.60 -0.24 3.20 16 3 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 4 C -0.13 -2.17 4.85 -26.61 -0.13 -2.30 16 5 C 0.15 2.63 2.42 -67.89 -0.16 2.47 16 6 H 0.08 1.62 7.57 -51.93 -0.39 1.23 16 7 N -0.72 -9.88 5.07 -54.88 -0.28 -10.16 16 8 C 0.58 8.91 7.78 -12.57 -0.10 8.81 16 9 O -0.54 -10.69 16.59 5.25 0.09 -10.60 16 10 C -0.22 -2.53 6.14 -104.96 -0.64 -3.17 16 11 C 0.07 0.52 11.44 -16.41 -0.19 0.33 16 12 N -0.53 -3.59 6.01 -9.19 -0.06 -3.64 16 13 H 0.42 1.66 8.96 -40.82 -0.37 1.30 16 14 C 0.05 0.51 7.08 -82.31 -0.58 -0.07 16 15 C 0.26 2.54 8.20 -156.27 -1.28 1.25 16 16 N -0.26 -2.84 12.52 32.09 0.40 -2.44 16 17 N -0.04 -0.38 13.47 60.35 0.81 0.43 16 18 N -0.23 -1.26 7.90 60.35 0.48 -0.78 16 19 H 0.48 0.27 8.96 -340.33 -3.05 -2.78 16 20 N -0.31 -2.38 12.41 32.11 0.40 -1.98 16 21 C -0.06 -0.69 10.59 -39.09 -0.41 -1.10 16 22 C -0.15 -2.92 5.65 -26.61 -0.15 -3.07 16 23 C 0.17 4.24 5.28 -3.71 -0.02 4.22 16 24 N -0.59 -14.29 2.99 -164.77 -0.49 -14.78 16 25 C -0.25 -6.65 8.57 -15.06 -0.13 -6.78 16 26 H 0.07 1.74 6.24 -52.48 -0.33 1.41 16 27 C 0.00 0.07 4.94 -17.43 -0.09 -0.01 16 28 N -0.90 -26.23 11.23 55.49 0.62 -25.61 16 29 Si 0.90 21.56 29.58 -169.99 -5.03 16.53 16 30 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 31 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 32 H -0.28 -6.75 7.11 56.52 0.40 -6.34 16 33 H 0.05 0.96 7.43 -51.93 -0.39 0.58 16 34 H 0.04 0.57 8.14 -51.93 -0.42 0.14 16 35 H 0.06 1.25 7.63 -51.93 -0.40 0.86 16 36 H 0.05 0.77 8.14 -51.92 -0.42 0.34 16 37 H 0.06 1.00 8.14 -51.93 -0.42 0.57 16 38 H 0.39 3.90 7.52 -40.82 -0.31 3.60 16 39 H 0.18 0.68 7.44 -52.49 -0.39 0.28 16 40 H 0.16 2.03 8.06 -52.48 -0.42 1.61 16 41 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 42 H 0.05 1.11 8.14 -51.93 -0.42 0.68 16 43 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 44 H 0.09 2.36 6.15 -51.93 -0.32 2.04 16 45 H 0.25 7.20 8.31 -40.82 -0.34 6.86 16 LS Contribution 374.73 15.07 5.65 5.65 Total: -1.00 -35.78 374.73 -9.69 -45.47 By element: Atomic # 1 Polarization: 8.74 SS G_CDS: -8.45 Total: 0.28 kcal Atomic # 6 Polarization: 5.46 SS G_CDS: -3.83 Total: 1.63 kcal Atomic # 7 Polarization: -60.84 SS G_CDS: 1.89 Total: -58.96 kcal Atomic # 8 Polarization: -10.69 SS G_CDS: 0.09 Total: -10.60 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.03 Total: 16.53 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -35.78 -9.69 -45.47 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001603852078.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 199.479 kcal (2) G-P(sol) polarization free energy of solvation -35.783 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 163.695 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.687 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.470 kcal (6) G-S(sol) free energy of system = (1) + (5) 154.008 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds