Wall clock time and date at job start Wed Apr 1 2020 02:55:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09001 * 109.58923 * 2 1 4 4 C 1.53195 * 109.70330 * 120.35991 * 2 1 3 5 5 C 1.53043 * 109.31320 * 174.49146 * 4 2 1 6 6 H 1.09000 * 109.45881 * 58.65285 * 5 4 2 7 7 N 1.46495 * 109.45824 * 178.61170 * 5 4 2 8 8 C 1.34783 * 120.00021 * 205.06818 * 7 5 4 9 9 O 1.21629 * 119.99639 * 359.97438 * 8 7 5 10 10 C 1.47311 * 120.00190 * 180.02562 * 8 7 5 11 11 C 1.37823 * 126.52376 * 0.02562 * 10 8 7 12 12 N 1.34787 * 108.25004 * 180.02562 * 11 10 8 13 13 H 0.96997 * 125.36561 * 180.02562 * 12 11 10 14 14 C 1.37315 * 109.26862 * 0.02562 * 12 11 10 15 15 C 1.48006 * 125.76201 * 180.02562 * 14 12 11 16 16 N 1.34169 * 126.69298 * 180.02562 * 15 14 12 17 17 N 1.28984 * 107.25280 * 179.97438 * 16 15 14 18 18 N 1.28727 * 108.98567 * 0.02562 * 17 16 15 19 19 H 0.96999 * 125.32378 * 180.02562 * 18 17 16 20 20 N 1.28875 * 109.35330 * 359.75064 * 18 17 16 21 21 C 1.35705 * 108.47054 * 359.71496 * 14 12 11 22 22 C 1.53037 * 109.53665 * 298.63267 * 5 4 2 23 23 C 1.53189 * 109.31498 * 61.36629 * 22 5 4 24 24 N 1.46931 * 108.77631 * 305.36303 * 23 22 5 25 25 C 1.36930 * 120.63407 * 233.58606 * 24 23 22 26 26 H 1.08005 * 120.00091 * 150.16987 * 25 24 23 27 27 C 1.38816 * 120.00068 * 330.17123 * 25 24 23 28 28 N 1.31612 * 119.99500 * 344.50211 * 27 25 24 29 29 Si 1.86794 * 120.00031 * 164.50387 * 27 25 24 30 30 H 1.48504 * 109.47187 * 59.99600 * 29 27 25 31 31 H 1.48497 * 109.47306 * 179.97438 * 29 27 25 32 32 H 1.48497 * 109.47353 * 299.99978 * 29 27 25 33 33 H 1.08997 * 109.47474 * 180.28355 * 1 2 3 34 34 H 1.09000 * 109.46958 * 300.28148 * 1 2 3 35 35 H 1.08994 * 109.47235 * 60.28299 * 1 2 3 36 36 H 1.09008 * 109.49591 * 294.44121 * 4 2 1 37 37 H 1.08997 * 109.49954 * 54.53918 * 4 2 1 38 38 H 0.97000 * 120.00524 * 25.06806 * 7 5 4 39 39 H 1.07997 * 125.88036 * 0.04368 * 11 10 8 40 40 H 1.08006 * 126.46479 * 180.28145 * 21 14 12 41 41 H 1.09004 * 109.49960 * 301.41435 * 22 5 4 42 42 H 1.08999 * 109.49696 * 181.31816 * 22 5 4 43 43 H 1.08999 * 109.58783 * 65.15040 * 23 22 5 44 44 H 1.08999 * 109.58780 * 185.43804 * 23 22 5 45 45 H 0.97002 * 119.99590 * 180.02562 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8954 1.0269 0.0000 4 6 2.0465 -0.7290 1.2445 5 6 3.5706 -0.8445 1.1674 6 1 4.0071 0.1518 1.0965 7 7 4.0710 -1.5117 2.3717 8 6 5.3349 -1.2947 2.7865 9 8 6.0601 -0.5452 2.1606 10 6 5.8383 -1.9661 3.9972 11 6 5.1380 -2.8377 4.8031 12 7 5.9494 -3.2307 5.8051 13 1 5.7072 -3.8453 6.5153 14 6 7.1728 -2.6238 5.6620 15 6 8.3354 -2.7984 6.5611 16 7 9.5376 -2.2152 6.4395 17 7 10.2645 -2.6287 7.4215 18 7 9.5716 -3.4386 8.1434 19 1 9.8878 -3.8882 8.9426 20 7 8.3903 -3.5542 7.6414 21 6 7.1380 -1.8423 4.5531 22 6 3.9601 -1.6609 -0.0671 23 6 3.4654 -0.9426 -1.3264 24 7 2.0225 -0.6981 -1.1954 25 6 1.1534 -1.1125 -2.1690 26 1 0.1402 -1.3818 -1.9094 27 6 1.5746 -1.1866 -3.4897 28 7 2.6837 -0.5834 -3.8614 29 14 0.5671 -2.1422 -4.7391 30 1 -0.7946 -1.5566 -4.8290 31 1 1.2262 -2.0676 -6.0677 32 1 0.4683 -3.5616 -4.3140 33 1 -0.3634 -1.0276 0.0051 34 1 -0.3633 0.5182 0.8875 35 1 -0.3633 0.5094 -0.8925 36 1 1.7688 -0.1673 2.1365 37 1 1.6079 -1.7258 1.2905 38 1 3.4928 -2.1098 2.8706 39 1 4.1152 -3.1521 4.6568 40 1 7.9462 -1.2383 4.1678 41 1 3.5036 -2.6489 -0.0088 42 1 5.0446 -1.7626 -0.1086 43 1 3.9886 0.0075 -1.4346 44 1 3.6546 -1.5655 -2.2006 45 1 2.9778 -0.6349 -4.7843 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001603852078.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:55:11 Heat of formation + Delta-G solvation = 126.016747 kcal Electronic energy + Delta-G solvation = -29179.986018 eV Core-core repulsion = 25042.667621 eV Total energy + Delta-G solvation = -4137.318398 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.165 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -45.50657 -42.37502 -40.54679 -39.00213 -35.98667 -35.45744 -34.47465 -34.14010 -33.05534 -32.30739 -31.29029 -30.02953 -27.89262 -26.68478 -25.66941 -25.11144 -24.29348 -23.45594 -22.09464 -21.69108 -21.17913 -20.36047 -20.28966 -19.20416 -18.22490 -18.21409 -17.31391 -17.13361 -16.55967 -16.03789 -15.72591 -15.69098 -15.44952 -15.12769 -15.08741 -14.91619 -14.65288 -14.53722 -14.26919 -14.13549 -13.35460 -13.32172 -13.26557 -12.87745 -12.66279 -12.61760 -12.54599 -12.48275 -12.29674 -12.25319 -12.08153 -12.05381 -11.77765 -11.64451 -11.42118 -11.27417 -10.82832 -10.49256 -10.17399 -9.83880 -9.20029 -8.58353 -7.78541 -5.25311 -0.11077 0.34385 0.81098 1.33763 1.50572 1.52905 1.59260 1.76802 1.86471 2.29526 2.56986 2.62515 2.76755 3.28575 3.37536 3.65903 3.90361 3.98081 4.08050 4.16639 4.18054 4.32051 4.36797 4.37444 4.48576 4.70039 4.74243 4.81688 4.84028 4.94770 5.01842 5.04121 5.17781 5.20436 5.25842 5.45847 5.46936 5.56193 5.57210 5.62030 5.65985 5.69397 5.77558 5.78611 6.40467 6.48394 6.81461 7.05798 7.22238 7.48460 7.94674 8.48290 9.28711 Molecular weight = 345.17amu Principal moments of inertia in cm(-1) A = 0.026481 B = 0.001896 C = 0.001853 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1057.091095 B =14764.707112 C =15106.521013 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C 0.157 3.843 3 H 0.007 0.993 4 C -0.115 4.115 5 C 0.164 3.836 6 H 0.051 0.949 7 N -0.703 5.703 8 C 0.582 3.418 9 O -0.598 6.598 10 C -0.253 4.253 11 C 0.117 3.883 12 N -0.504 5.504 13 H 0.443 0.557 14 C 0.053 3.947 15 C 0.241 3.759 16 N -0.294 5.294 17 N -0.053 5.053 18 N -0.195 5.195 19 H 0.496 0.504 20 N -0.297 5.297 21 C -0.084 4.084 22 C -0.130 4.130 23 C 0.183 3.817 24 N -0.602 5.602 25 C -0.246 4.246 26 H 0.081 0.919 27 C -0.060 4.060 28 N -0.942 5.942 29 Si 0.965 3.035 30 H -0.274 1.274 31 H -0.303 1.303 32 H -0.276 1.276 33 H 0.057 0.943 34 H 0.077 0.923 35 H 0.036 0.964 36 H 0.091 0.909 37 H 0.081 0.919 38 H 0.415 0.585 39 H 0.235 0.765 40 H 0.135 0.865 41 H 0.065 0.935 42 H 0.040 0.960 43 H -0.017 1.017 44 H 0.052 0.948 45 H 0.245 0.755 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.462 -11.003 30.531 32.758 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.051 3.949 3 H 0.025 0.975 4 C -0.155 4.155 5 C 0.059 3.941 6 H 0.069 0.931 7 N -0.354 5.354 8 C 0.372 3.628 9 O -0.480 6.480 10 C -0.263 4.263 11 C -0.026 4.026 12 N -0.099 5.099 13 H 0.285 0.715 14 C -0.059 4.059 15 C -0.039 4.039 16 N -0.166 5.166 17 N -0.048 5.048 18 N -0.047 5.047 19 H 0.355 0.645 20 N -0.150 5.150 21 C -0.112 4.112 22 C -0.170 4.170 23 C 0.057 3.943 24 N -0.326 5.326 25 C -0.376 4.376 26 H 0.099 0.901 27 C -0.255 4.255 28 N -0.589 5.589 29 Si 0.793 3.207 30 H -0.199 1.199 31 H -0.230 1.230 32 H -0.202 1.202 33 H 0.076 0.924 34 H 0.096 0.904 35 H 0.056 0.944 36 H 0.110 0.890 37 H 0.100 0.900 38 H 0.253 0.747 39 H 0.251 0.749 40 H 0.153 0.847 41 H 0.084 0.916 42 H 0.059 0.941 43 H 0.001 0.999 44 H 0.071 0.929 45 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 5.646 -10.467 30.328 32.577 hybrid contribution -0.204 -0.756 -0.717 1.062 sum 5.442 -11.223 29.611 32.131 Atomic orbital electron populations 1.21700 0.93778 1.01801 1.01040 1.20675 0.94759 0.92844 0.86668 0.97516 1.22167 0.92178 1.02471 0.98660 1.20608 0.94998 0.95050 0.83492 0.93101 1.45732 1.12997 1.48684 1.28017 1.17843 0.81436 0.80041 0.83480 1.90781 1.58058 1.40193 1.58931 1.19451 0.96666 1.09506 1.00643 1.23017 0.97755 0.95020 0.86792 1.41472 1.08492 1.36178 1.23783 0.71503 1.16200 0.84988 1.06459 0.98263 1.22554 0.93342 0.95119 0.92887 1.76200 1.02165 1.22305 1.15930 1.78928 1.20957 1.04969 0.99955 1.47727 1.04857 1.29050 1.23045 0.64456 1.74891 1.04992 1.23681 1.11481 1.20935 0.97200 0.99229 0.93861 1.22303 0.98848 0.99751 0.96126 1.20424 0.83761 0.95283 0.94879 1.44411 1.02444 1.65655 1.20046 1.19513 0.95754 1.35914 0.86432 0.90101 1.25917 0.99219 1.01156 0.99161 1.70207 1.26308 1.45913 1.16461 0.85378 0.78284 0.79155 0.77862 1.19922 1.22966 1.20207 0.92355 0.90390 0.94436 0.89018 0.90042 0.74733 0.74902 0.84698 0.91598 0.94101 0.99870 0.92943 0.94550 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.22 7.96 71.98 0.57 -3.65 16 2 C 0.16 6.15 3.49 44.97 0.16 6.30 16 3 H 0.01 0.31 8.14 -2.39 -0.02 0.29 16 4 C -0.12 -3.39 4.85 30.67 0.15 -3.24 16 5 C 0.16 5.51 2.42 45.02 0.11 5.62 16 6 H 0.05 2.07 7.57 -2.39 -0.02 2.05 16 7 N -0.70 -17.63 5.07 -445.77 -2.26 -19.89 16 8 C 0.58 17.62 7.78 86.63 0.67 18.30 16 9 O -0.60 -25.11 16.59 -4.12 -0.07 -25.18 16 10 C -0.25 -5.58 6.14 -20.08 -0.12 -5.70 16 11 C 0.12 1.21 11.44 84.14 0.96 2.17 16 12 N -0.50 -4.93 6.01 -182.98 -1.10 -6.03 16 13 H 0.44 1.28 8.96 -92.71 -0.83 0.45 16 14 C 0.05 0.97 7.08 40.29 0.29 1.26 16 15 C 0.24 4.51 8.20 137.16 1.12 5.63 16 16 N -0.29 -6.54 12.52 -52.38 -0.66 -7.20 16 17 N -0.05 -0.88 13.47 37.02 0.50 -0.38 16 18 N -0.20 -1.75 7.90 37.02 0.29 -1.46 16 19 H 0.50 -0.76 8.96 -347.51 -3.11 -3.88 16 20 N -0.30 -3.82 12.41 -52.33 -0.65 -4.47 16 21 C -0.08 -2.04 10.59 22.59 0.24 -1.80 16 22 C -0.13 -5.26 5.65 30.67 0.17 -5.09 16 23 C 0.18 9.36 5.28 86.36 0.46 9.81 16 24 N -0.60 -29.68 2.99 -675.21 -2.02 -31.70 16 25 C -0.25 -13.06 8.57 84.04 0.72 -12.34 16 26 H 0.08 4.03 6.24 -2.91 -0.02 4.02 16 27 C -0.06 -3.37 4.94 84.86 0.42 -2.95 16 28 N -0.94 -57.58 11.23 21.65 0.24 -57.33 16 29 Si 0.96 45.00 29.58 68.60 2.03 47.03 16 30 H -0.27 -12.19 7.11 99.48 0.71 -11.49 16 31 H -0.30 -14.56 7.11 99.48 0.71 -13.86 16 32 H -0.28 -12.36 7.11 99.48 0.71 -11.65 16 33 H 0.06 1.90 7.43 -2.39 -0.02 1.88 16 34 H 0.08 2.00 8.14 -2.39 -0.02 1.98 16 35 H 0.04 1.43 7.63 -2.39 -0.02 1.41 16 36 H 0.09 2.10 8.14 -2.38 -0.02 2.08 16 37 H 0.08 2.17 8.14 -2.39 -0.02 2.15 16 38 H 0.42 6.28 7.52 -92.71 -0.70 5.58 16 39 H 0.23 0.01 7.44 -2.91 -0.02 -0.02 16 40 H 0.14 3.84 8.06 -2.91 -0.02 3.81 16 41 H 0.07 2.51 8.14 -2.38 -0.02 2.49 16 42 H 0.04 1.74 8.14 -2.39 -0.02 1.72 16 43 H -0.02 -0.96 8.14 -2.39 -0.02 -0.98 16 44 H 0.05 3.02 6.15 -2.39 -0.01 3.00 16 45 H 0.25 14.71 8.31 -92.71 -0.77 13.94 16 Total: -1.00 -85.96 374.73 -1.33 -87.28 By element: Atomic # 1 Polarization: 8.55 SS G_CDS: -3.56 Total: 4.99 kcal Atomic # 6 Polarization: 8.41 SS G_CDS: 5.92 Total: 14.33 kcal Atomic # 7 Polarization: -122.81 SS G_CDS: -5.65 Total: -128.46 kcal Atomic # 8 Polarization: -25.11 SS G_CDS: -0.07 Total: -25.18 kcal Atomic # 14 Polarization: 45.00 SS G_CDS: 2.03 Total: 47.03 kcal Total: -85.96 -1.33 -87.28 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001603852078.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 213.300 kcal (2) G-P(sol) polarization free energy of solvation -85.955 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 127.345 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.328 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.283 kcal (6) G-S(sol) free energy of system = (1) + (5) 126.017 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds