Wall clock time and date at job start Wed Apr 1 2020 02:55:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08996 * 109.70225 * 2 1 4 4 C 1.53195 * 109.58351 * 120.35707 * 2 1 3 5 5 C 1.53042 * 109.31107 * 174.42092 * 4 2 1 6 6 H 1.08996 * 109.45108 * 178.61742 * 5 4 2 7 7 N 1.46500 * 109.46031 * 58.65535 * 5 4 2 8 8 C 1.36932 * 120.00315 * 154.92748 * 7 5 4 9 9 H 1.08004 * 120.00111 * 0.02562 * 8 7 5 10 10 C 1.38818 * 120.00269 * 179.97438 * 8 7 5 11 11 N 1.31623 * 119.99689 * 0.02562 * 10 8 7 12 12 Si 1.86794 * 119.99973 * 180.02562 * 10 8 7 13 13 H 1.48503 * 109.47346 * 60.00254 * 12 10 8 14 14 H 1.48502 * 109.47362 * 180.02562 * 12 10 8 15 15 H 1.48503 * 109.47222 * 300.00289 * 12 10 8 16 16 C 1.53046 * 109.54002 * 298.63753 * 5 4 2 17 17 C 1.53192 * 109.31356 * 61.36295 * 16 5 4 18 18 N 1.46925 * 108.77529 * 305.36647 * 17 16 5 19 19 C 1.34774 * 120.63395 * 233.63038 * 18 17 16 20 20 O 1.21704 * 120.00308 * 187.04966 * 19 18 17 21 21 C 1.46609 * 119.99793 * 7.04709 * 19 18 17 22 22 C 1.38027 * 126.01086 * 206.26386 * 21 19 18 23 23 C 1.39392 * 107.42827 * 179.97438 * 22 21 19 24 24 C 1.37751 * 107.65678 * 0.02562 * 23 22 21 25 25 C 1.47919 * 125.81985 * 180.02562 * 24 23 22 26 26 N 1.34207 * 126.69973 * 179.66235 * 25 24 23 27 27 N 1.28982 * 107.24860 * 179.83546 * 26 25 24 28 28 N 1.28718 * 108.99467 * 0.43144 * 27 26 25 29 29 H 0.97003 * 125.31737 * 179.72324 * 28 27 26 30 30 N 1.28866 * 109.36817 * 359.72700 * 28 27 26 31 31 N 1.36390 * 108.35703 * 359.75170 * 24 23 22 32 32 H 0.97001 * 125.70913 * 180.23809 * 31 24 23 33 33 H 1.08995 * 109.47571 * 292.21463 * 1 2 3 34 34 H 1.09001 * 109.47118 * 52.21564 * 1 2 3 35 35 H 1.09004 * 109.47422 * 172.20961 * 1 2 3 36 36 H 1.08993 * 109.49730 * 54.47428 * 4 2 1 37 37 H 1.09002 * 109.49963 * 294.37274 * 4 2 1 38 38 H 0.97005 * 119.99908 * 334.93543 * 7 5 4 39 39 H 0.96996 * 119.99561 * 179.97438 * 11 10 8 40 40 H 1.08995 * 109.49195 * 301.41152 * 16 5 4 41 41 H 1.08998 * 109.52043 * 181.33444 * 16 5 4 42 42 H 1.09005 * 109.58659 * 65.15090 * 17 16 5 43 43 H 1.08993 * 109.58674 * 185.57955 * 17 16 5 44 44 H 1.08000 * 126.28450 * 359.95695 * 22 21 19 45 45 H 1.08002 * 126.17135 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8975 1.0261 0.0000 4 6 2.0435 -0.7294 1.2454 5 6 3.5674 -0.8481 1.1702 6 1 3.9375 -1.3450 2.0669 7 7 4.1570 0.4897 1.0750 8 6 5.4408 0.7040 1.5004 9 1 6.0190 -0.1133 1.9057 10 6 5.9997 1.9714 1.4098 11 7 5.2953 2.9674 0.9153 12 14 7.7512 2.2635 1.9894 13 1 8.6800 1.4055 1.2107 14 1 8.1081 3.6908 1.7872 15 1 7.8580 1.9267 3.4318 16 6 3.9569 -1.6658 -0.0635 17 6 3.4651 -0.9470 -1.3238 18 7 2.0226 -0.6996 -1.1945 19 6 1.1673 -1.1069 -2.1532 20 8 -0.0053 -0.7855 -2.0992 21 6 1.6496 -1.9371 -3.2612 22 6 1.0923 -2.0117 -4.5217 23 6 1.8552 -2.9126 -5.2629 24 6 2.8646 -3.3750 -4.4475 25 6 3.9084 -4.3506 -4.8306 26 7 4.9024 -4.8081 -4.0536 27 7 5.5877 -5.6414 -4.7605 28 7 5.0725 -5.7149 -5.9378 29 1 5.4042 -6.2693 -6.6614 30 7 4.0475 -4.9369 -6.0050 31 7 2.7410 -2.7754 -3.2288 32 1 3.3234 -2.9175 -2.4662 33 1 -0.3634 0.3885 0.9513 34 1 -0.3633 0.6296 -0.8122 35 1 -0.3634 -1.0182 -0.1393 36 1 1.6029 -1.7253 1.2913 37 1 1.7659 -0.1669 2.1369 38 1 3.6379 1.2237 0.7108 39 1 5.6857 3.8531 0.8524 40 1 3.4983 -2.6528 -0.0053 41 1 5.0411 -1.7702 -0.1039 42 1 3.9903 0.0021 -1.4316 43 1 3.6518 -1.5717 -2.1971 44 1 0.2243 -1.4714 -4.8697 45 1 1.6851 -3.1973 -6.2907 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001603858686.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:55:22 Heat of formation + Delta-G solvation = 160.107565 kcal Electronic energy + Delta-G solvation = -30703.990602 eV Core-core repulsion = 26568.150493 eV Total energy + Delta-G solvation = -4135.840109 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.165 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -45.52106 -42.69412 -40.98313 -38.84673 -35.94939 -35.44960 -34.65113 -34.02476 -33.67206 -32.18678 -30.99307 -30.19928 -28.42798 -26.05888 -25.71265 -25.62538 -25.04866 -23.69887 -22.54010 -21.76606 -21.04382 -20.53198 -20.02753 -19.23033 -18.53634 -18.22219 -17.46385 -17.10173 -16.72396 -16.03274 -15.84506 -15.62502 -15.53084 -15.39104 -15.12124 -15.05246 -14.68578 -14.36955 -14.08892 -13.92103 -13.66534 -13.48280 -13.30699 -13.15717 -12.95263 -12.82810 -12.68528 -12.51992 -12.48797 -12.27922 -12.18007 -12.10869 -12.00614 -11.91069 -11.62745 -11.43558 -10.91049 -10.35372 -10.10848 -9.64880 -9.16158 -8.96900 -7.90582 -5.17992 -0.24707 0.15168 0.90128 1.21853 1.49180 1.50355 1.56297 1.76753 1.83190 1.94959 2.27921 2.58509 2.62877 3.17222 3.38462 3.42600 3.79378 3.86066 3.93196 4.03222 4.06414 4.16915 4.22802 4.28292 4.33220 4.39308 4.44760 4.59779 4.64598 4.83300 4.92232 4.92577 4.98902 5.05787 5.12985 5.19495 5.24041 5.32561 5.39280 5.54569 5.56943 5.58286 5.66804 5.76887 6.07970 6.31124 6.37257 7.02874 7.04542 7.38479 8.14052 8.37129 9.32403 Molecular weight = 345.17amu Principal moments of inertia in cm(-1) A = 0.009704 B = 0.003482 C = 0.002766 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2884.822742 B = 8039.127679 C =10121.848734 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C 0.148 3.852 3 H 0.053 0.947 4 C -0.123 4.123 5 C 0.167 3.833 6 H 0.053 0.947 7 N -0.730 5.730 8 C -0.233 4.233 9 H 0.077 0.923 10 C -0.072 4.072 11 N -0.968 5.968 12 Si 0.965 3.035 13 H -0.280 1.280 14 H -0.301 1.301 15 H -0.280 1.280 16 C -0.145 4.145 17 C 0.106 3.894 18 N -0.595 5.595 19 C 0.583 3.417 20 O -0.544 6.544 21 C -0.029 4.029 22 C -0.115 4.115 23 C -0.132 4.132 24 C 0.092 3.908 25 C 0.231 3.769 26 N -0.302 5.302 27 N -0.051 5.051 28 N -0.194 5.194 29 H 0.497 0.503 30 N -0.273 5.273 31 N -0.516 5.516 32 H 0.430 0.570 33 H 0.059 0.941 34 H 0.060 0.940 35 H 0.061 0.939 36 H 0.085 0.915 37 H 0.075 0.925 38 H 0.373 0.627 39 H 0.248 0.752 40 H 0.079 0.921 41 H 0.069 0.931 42 H 0.056 0.944 43 H 0.093 0.907 44 H 0.167 0.833 45 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.715 -18.760 -14.625 24.464 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.045 3.955 3 H 0.071 0.929 4 C -0.161 4.161 5 C 0.059 3.941 6 H 0.071 0.929 7 N -0.371 5.371 8 C -0.365 4.365 9 H 0.095 0.905 10 C -0.265 4.265 11 N -0.619 5.619 12 Si 0.795 3.205 13 H -0.206 1.206 14 H -0.228 1.228 15 H -0.206 1.206 16 C -0.186 4.186 17 C -0.018 4.018 18 N -0.327 5.327 19 C 0.372 3.628 20 O -0.423 6.423 21 C -0.145 4.145 22 C -0.141 4.141 23 C -0.160 4.160 24 C -0.027 4.027 25 C -0.049 4.049 26 N -0.175 5.175 27 N -0.046 5.046 28 N -0.046 5.046 29 H 0.357 0.643 30 N -0.126 5.126 31 N -0.119 5.119 32 H 0.276 0.724 33 H 0.078 0.922 34 H 0.079 0.921 35 H 0.080 0.920 36 H 0.104 0.896 37 H 0.094 0.906 38 H 0.207 0.793 39 H 0.057 0.943 40 H 0.098 0.902 41 H 0.088 0.912 42 H 0.074 0.926 43 H 0.110 0.890 44 H 0.185 0.815 45 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges -5.492 -19.018 -14.195 24.359 hybrid contribution 1.312 0.835 0.189 1.567 sum -4.180 -18.183 -14.006 23.330 Atomic orbital electron populations 1.22037 0.91943 1.02951 1.01120 1.21199 0.95640 0.94878 0.83789 0.92864 1.22154 0.95535 1.01495 0.96963 1.20412 0.91866 0.86127 0.95714 0.92921 1.42654 1.13044 1.06315 1.75113 1.19567 0.90872 0.94053 1.32033 0.90537 1.25427 1.01712 0.96066 1.03255 1.69800 1.38036 1.00678 1.53423 0.85339 0.80925 0.76026 0.78222 1.20621 1.22756 1.20649 1.22460 1.01470 0.98787 0.95861 1.22015 0.79381 1.01265 0.99091 1.48123 1.07400 1.56964 1.20247 1.17321 0.85273 0.79556 0.80610 1.90868 1.17315 1.58553 1.75546 1.20594 0.93485 1.02188 0.98257 1.21454 1.01331 1.00734 0.90548 1.21363 0.94293 0.99523 1.00799 1.17177 0.97833 1.00107 0.87557 1.22488 0.95896 0.99129 0.87389 1.76198 1.05606 1.09432 1.26259 1.78859 1.19614 1.14071 0.92057 1.47828 1.15928 1.28387 1.12413 0.64277 1.74949 1.07394 1.08299 1.21988 1.42777 1.23494 1.33237 1.12385 0.72408 0.92186 0.92061 0.92009 0.89624 0.90641 0.79348 0.94297 0.90246 0.91220 0.92601 0.88997 0.81541 0.80385 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.73 7.62 71.98 0.55 -3.18 16 2 C 0.15 4.86 3.20 44.97 0.14 5.00 16 3 H 0.05 2.08 6.64 -2.39 -0.02 2.07 16 4 C -0.12 -3.79 5.07 30.67 0.16 -3.64 16 5 C 0.17 6.00 3.10 45.02 0.14 6.14 16 6 H 0.05 1.91 8.08 -2.39 -0.02 1.89 16 7 N -0.73 -34.11 4.31 -322.80 -1.39 -35.50 16 8 C -0.23 -12.25 9.93 84.04 0.83 -11.41 16 9 H 0.08 3.84 7.83 -2.91 -0.02 3.82 16 10 C -0.07 -4.02 5.50 84.86 0.47 -3.55 16 11 N -0.97 -58.00 13.06 21.65 0.28 -57.72 16 12 Si 0.96 45.31 29.55 68.60 2.03 47.34 16 13 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 14 H -0.30 -14.48 7.11 99.48 0.71 -13.77 16 15 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16 16 C -0.15 -4.46 5.70 30.67 0.17 -4.28 16 17 C 0.11 3.32 5.61 86.36 0.48 3.80 16 18 N -0.60 -18.69 2.97 -799.76 -2.38 -21.07 16 19 C 0.58 18.00 7.39 86.43 0.64 18.64 16 20 O -0.54 -18.67 12.59 -4.36 -0.05 -18.73 16 21 C -0.03 -0.75 6.41 40.36 0.26 -0.49 16 22 C -0.11 -2.54 10.70 22.50 0.24 -2.30 16 23 C -0.13 -2.52 10.79 22.43 0.24 -2.27 16 24 C 0.09 2.00 7.12 40.89 0.29 2.29 16 25 C 0.23 4.85 8.21 137.11 1.13 5.98 16 26 N -0.30 -6.93 12.54 -52.40 -0.66 -7.59 16 27 N -0.05 -0.93 13.46 37.02 0.50 -0.43 16 28 N -0.19 -2.16 7.90 37.02 0.29 -1.87 16 29 H 0.50 0.30 8.96 -347.51 -3.12 -2.81 16 30 N -0.27 -4.40 12.39 -52.35 -0.65 -5.05 16 31 N -0.52 -12.06 4.83 -172.28 -0.83 -12.89 16 32 H 0.43 9.80 6.35 -92.71 -0.59 9.21 16 33 H 0.06 1.61 8.14 -2.39 -0.02 1.59 16 34 H 0.06 2.03 6.68 -2.39 -0.02 2.01 16 35 H 0.06 1.88 6.82 -2.39 -0.02 1.86 16 36 H 0.09 2.27 8.14 -2.39 -0.02 2.25 16 37 H 0.07 2.37 8.14 -2.39 -0.02 2.35 16 38 H 0.37 19.09 6.06 -92.70 -0.56 18.53 16 39 H 0.25 14.65 8.31 -92.71 -0.77 13.88 16 40 H 0.08 1.99 8.14 -2.39 -0.02 1.97 16 41 H 0.07 2.28 8.14 -2.39 -0.02 2.26 16 42 H 0.06 2.19 7.74 -2.38 -0.02 2.17 16 43 H 0.09 2.50 3.49 -2.39 -0.01 2.49 16 44 H 0.17 3.26 8.06 -2.91 -0.02 3.24 16 45 H 0.18 2.41 8.06 -2.91 -0.02 2.39 16 Total: -1.00 -69.13 365.05 -0.29 -69.42 By element: Atomic # 1 Polarization: 36.56 SS G_CDS: -3.18 Total: 33.38 kcal Atomic # 6 Polarization: 4.97 SS G_CDS: 5.75 Total: 10.71 kcal Atomic # 7 Polarization: -137.29 SS G_CDS: -4.83 Total: -142.12 kcal Atomic # 8 Polarization: -18.67 SS G_CDS: -0.05 Total: -18.73 kcal Atomic # 14 Polarization: 45.31 SS G_CDS: 2.03 Total: 47.34 kcal Total: -69.13 -0.29 -69.42 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001603858686.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 229.528 kcal (2) G-P(sol) polarization free energy of solvation -69.129 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 160.399 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.291 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.421 kcal (6) G-S(sol) free energy of system = (1) + (5) 160.108 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds