Wall clock time and date at job start Wed Apr 1 2020 03:14:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.08995 * 109.75074 * 2 1 4 4 C 1.53808 * 109.76247 * 239.37096 * 2 1 3 5 5 N 1.46964 * 108.57971 * 289.95069 * 4 2 1 6 6 C 1.34780 * 120.59762 * 124.67090 * 5 4 2 7 7 O 1.21713 * 119.99585 * 358.85344 * 6 5 4 8 8 C 1.46600 * 120.00368 * 178.86102 * 6 5 4 9 9 C 1.38025 * 126.01236 * 153.43934 * 8 6 5 10 10 C 1.39389 * 107.43266 * 179.88001 * 9 8 6 11 11 C 1.37756 * 107.65285 * 0.38325 * 10 9 8 12 12 C 1.47910 * 125.82173 * 179.78515 * 11 10 9 13 13 N 1.34213 * 126.70603 * 179.66162 * 12 11 10 14 14 N 1.28981 * 107.24890 * 179.89162 * 13 12 11 15 15 N 1.28711 * 109.00026 * 0.37946 * 14 13 12 16 16 H 0.97004 * 125.31789 * 179.79643 * 15 14 13 17 17 N 1.28874 * 109.36643 * 359.75813 * 15 14 13 18 18 N 1.36388 * 108.36048 * 359.76172 * 11 10 9 19 19 H 0.96994 * 125.71147 * 179.97438 * 18 11 10 20 20 C 1.46967 * 118.81161 * 304.64403 * 5 4 2 21 21 C 1.53370 * 108.63514 * 55.22457 * 20 5 4 22 22 H 1.09011 * 109.60599 * 70.31983 * 21 20 5 23 23 C 1.52996 * 109.61263 * 190.83089 * 21 20 5 24 24 N 1.46961 * 108.63482 * 310.58201 * 21 20 5 25 25 C 1.36940 * 120.58781 * 235.20346 * 24 21 20 26 26 H 1.08000 * 120.00852 * 39.18708 * 25 24 21 27 27 C 1.38819 * 119.99622 * 219.19253 * 25 24 21 28 28 N 1.31622 * 119.99922 * 1.48973 * 27 25 24 29 29 Si 1.86802 * 119.99982 * 181.49933 * 27 25 24 30 30 H 1.48499 * 109.46861 * 269.99538 * 29 27 25 31 31 H 1.48498 * 109.47097 * 29.99283 * 29 27 25 32 32 H 1.48493 * 109.47181 * 149.99456 * 29 27 25 33 33 H 1.08993 * 109.47716 * 299.57472 * 1 2 3 34 34 H 1.09009 * 109.46936 * 59.57899 * 1 2 3 35 35 H 1.09008 * 109.47017 * 179.56999 * 1 2 3 36 36 H 1.09005 * 109.74558 * 170.16322 * 4 2 1 37 37 H 1.09001 * 109.67349 * 49.69911 * 4 2 1 38 38 H 1.08004 * 126.28270 * 0.02562 * 9 8 6 39 39 H 1.08005 * 126.17873 * 180.15150 * 10 9 8 40 40 H 1.08996 * 109.61080 * 295.48402 * 20 5 4 41 41 H 1.09004 * 109.75000 * 175.05350 * 20 5 4 42 42 H 1.08997 * 109.47342 * 179.14670 * 23 21 20 43 43 H 1.08997 * 109.47121 * 299.14569 * 23 21 20 44 44 H 1.08998 * 109.47075 * 59.14728 * 23 21 20 45 45 H 0.96995 * 119.99542 * 180.02562 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8983 1.0258 0.0000 4 6 2.0500 -0.7375 -1.2455 5 7 1.7610 -2.1706 -1.0959 6 6 1.0611 -2.8315 -2.0393 7 8 0.6443 -2.2368 -3.0160 8 6 0.8017 -4.2665 -1.8889 9 6 -0.2627 -4.9597 -2.4289 10 6 -0.1287 -6.2938 -2.0478 11 6 1.0073 -6.3955 -1.2753 12 6 1.5250 -7.6349 -0.6560 13 7 2.6317 -7.7554 0.0936 14 7 2.7263 -8.9944 0.4395 15 7 1.7383 -9.6470 -0.0651 16 1 1.5800 -10.5977 0.0440 17 7 0.9918 -8.8398 -0.7374 18 7 1.5737 -5.1584 -1.1792 19 1 2.3843 -4.9432 -0.6922 20 6 2.2494 -2.8705 0.1006 21 6 1.7342 -2.1343 1.3435 22 1 0.6583 -2.2827 1.4369 23 6 2.4405 -2.6731 2.5891 24 7 2.0231 -0.7011 1.1938 25 6 2.7344 -0.0298 2.1522 26 1 3.5747 -0.5069 2.6345 27 6 2.3751 1.2641 2.5042 28 7 1.3330 1.8349 1.9378 29 14 3.3706 2.1952 3.7814 30 1 2.8083 1.9375 5.1315 31 1 4.7828 1.7381 3.7379 32 1 3.3121 3.6502 3.4903 33 1 -0.3634 0.5072 0.8937 34 1 -0.3633 0.5204 -0.8863 35 1 -0.3633 -1.0277 -0.0077 36 1 3.1258 -0.5891 -1.3390 37 1 1.5493 -0.3542 -2.1347 38 1 -1.0529 -4.5451 -3.0373 39 1 -0.7972 -7.1013 -2.3077 40 1 3.3393 -2.8739 0.1030 41 1 1.8803 -3.8961 0.1037 42 1 2.0838 -2.1380 3.4691 43 1 2.2246 -3.7360 2.6979 44 1 3.5162 -2.5293 2.4877 45 1 1.0822 2.7390 2.1834 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001603927966.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:14:29 Heat of formation + Delta-G solvation = 166.598921 kcal Electronic energy + Delta-G solvation = -31051.011464 eV Core-core repulsion = 26915.452842 eV Total energy + Delta-G solvation = -4135.558622 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.165 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -45.49641 -42.62020 -40.64107 -38.86331 -35.81899 -35.41668 -34.53411 -34.29604 -33.31784 -32.22291 -30.51538 -29.73280 -27.87873 -27.35145 -25.82887 -25.62988 -25.05463 -23.09091 -22.54357 -21.69340 -21.04526 -20.73843 -20.15357 -18.92462 -18.20060 -17.98083 -17.47288 -16.91863 -16.72624 -16.50607 -15.83621 -15.49687 -15.31309 -15.24885 -15.13196 -14.98020 -14.58028 -14.28596 -13.91797 -13.71746 -13.64613 -13.45878 -13.16500 -13.03419 -12.86590 -12.81428 -12.49860 -12.43717 -12.36889 -12.28599 -12.25070 -12.04325 -11.97537 -11.79637 -11.59828 -11.48191 -11.05806 -10.44731 -10.12217 -9.82912 -9.17086 -8.38180 -7.79715 -5.39569 -0.22995 0.17569 0.91639 1.22830 1.49576 1.52208 1.58852 1.78820 1.82864 1.96640 2.29508 2.53770 2.64469 3.19149 3.36671 3.39794 3.52705 3.99920 4.04291 4.09220 4.20281 4.26889 4.33914 4.37921 4.42056 4.58920 4.62990 4.68806 4.76938 4.83787 4.92652 4.95018 5.06981 5.15055 5.16034 5.29357 5.36136 5.53312 5.53750 5.60063 5.73793 5.74664 5.76738 5.87547 6.09932 6.38782 6.52969 7.02019 7.05437 7.24296 7.86685 8.45590 9.23671 Molecular weight = 345.17amu Principal moments of inertia in cm(-1) A = 0.014716 B = 0.003221 C = 0.002750 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1902.217830 B = 8690.497685 C =10180.947981 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C 0.185 3.815 3 H 0.074 0.926 4 C 0.104 3.896 5 N -0.591 5.591 6 C 0.579 3.421 7 O -0.568 6.568 8 C -0.025 4.025 9 C -0.116 4.116 10 C -0.131 4.131 11 C 0.097 3.903 12 C 0.233 3.767 13 N -0.300 5.300 14 N -0.050 5.050 15 N -0.194 5.194 16 H 0.497 0.503 17 N -0.273 5.273 18 N -0.514 5.514 19 H 0.432 0.568 20 C 0.081 3.919 21 C 0.153 3.847 22 H 0.014 0.986 23 C -0.126 4.126 24 N -0.593 5.593 25 C -0.257 4.257 26 H 0.071 0.929 27 C -0.035 4.035 28 N -0.921 5.921 29 Si 0.959 3.041 30 H -0.290 1.290 31 H -0.270 1.270 32 H -0.299 1.299 33 H 0.047 0.953 34 H 0.034 0.966 35 H 0.021 0.979 36 H 0.067 0.933 37 H 0.079 0.921 38 H 0.163 0.837 39 H 0.180 0.820 40 H 0.083 0.917 41 H 0.099 0.901 42 H 0.045 0.955 43 H 0.072 0.928 44 H 0.059 0.941 45 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.140 -23.510 -5.003 24.037 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.077 3.923 3 H 0.092 0.908 4 C -0.020 4.020 5 N -0.321 5.321 6 C 0.368 3.632 7 O -0.448 6.448 8 C -0.142 4.142 9 C -0.142 4.142 10 C -0.159 4.159 11 C -0.022 4.022 12 C -0.047 4.047 13 N -0.173 5.173 14 N -0.045 5.045 15 N -0.046 5.046 16 H 0.357 0.643 17 N -0.127 5.127 18 N -0.117 5.117 19 H 0.278 0.722 20 C -0.043 4.043 21 C 0.046 3.954 22 H 0.032 0.968 23 C -0.184 4.184 24 N -0.317 5.317 25 C -0.387 4.387 26 H 0.088 0.912 27 C -0.232 4.232 28 N -0.565 5.565 29 Si 0.788 3.212 30 H -0.217 1.217 31 H -0.195 1.195 32 H -0.226 1.226 33 H 0.066 0.934 34 H 0.053 0.947 35 H 0.040 0.960 36 H 0.085 0.915 37 H 0.098 0.902 38 H 0.180 0.820 39 H 0.197 0.803 40 H 0.102 0.898 41 H 0.117 0.883 42 H 0.065 0.935 43 H 0.091 0.909 44 H 0.078 0.922 45 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 0.242 -23.317 -4.997 23.848 hybrid contribution 0.239 0.986 0.893 1.352 sum 0.482 -22.331 -4.104 22.710 Atomic orbital electron populations 1.21780 0.98257 0.97992 0.99989 1.20627 0.92070 0.95629 0.83937 0.90834 1.22348 1.00164 0.79559 0.99956 1.47974 1.53073 1.10587 1.20503 1.17419 0.77975 0.85386 0.82381 1.90791 1.53372 1.68849 1.31753 1.20339 0.98797 0.89335 1.05695 1.21435 0.98024 0.92969 1.01799 1.21349 0.96921 0.97271 1.00351 1.17131 0.97703 0.81339 1.06060 1.22411 0.91600 0.91787 0.98934 1.76186 1.17547 1.09006 1.14519 1.78849 1.10336 0.99139 1.16162 1.47826 1.13118 1.14496 1.29140 0.64283 1.74964 1.20386 1.00240 1.17090 1.42774 1.23335 1.06029 1.39606 0.72185 1.22908 1.00070 0.96259 0.85093 1.20894 0.95885 0.85208 0.93440 0.96834 1.21663 1.00509 0.99721 0.96490 1.44239 1.62969 1.04355 1.20123 1.19298 1.07639 0.97101 1.14644 0.91167 1.26021 0.97244 1.00244 0.99672 1.70067 1.27777 1.13929 1.44733 0.85418 0.78924 0.77311 0.79560 1.21654 1.19474 1.22614 0.93410 0.94670 0.95998 0.91499 0.90242 0.81966 0.80276 0.89836 0.88323 0.93543 0.90898 0.92217 0.94301 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.60 8.93 71.98 0.64 -4.96 16 2 C 0.18 8.46 2.34 45.17 0.11 8.57 16 3 H 0.07 3.87 6.32 -2.39 -0.02 3.85 16 4 C 0.10 4.07 5.99 86.56 0.52 4.59 16 5 N -0.59 -20.76 2.59 -821.92 -2.13 -22.89 16 6 C 0.58 20.24 7.63 86.42 0.66 20.90 16 7 O -0.57 -23.18 16.38 -4.39 -0.07 -23.25 16 8 C -0.03 -0.71 6.43 40.36 0.26 -0.45 16 9 C -0.12 -2.80 10.70 22.50 0.24 -2.55 16 10 C -0.13 -2.58 10.79 22.43 0.24 -2.34 16 11 C 0.10 2.07 7.12 40.89 0.29 2.36 16 12 C 0.23 4.67 8.21 137.10 1.13 5.79 16 13 N -0.30 -6.41 12.54 -52.40 -0.66 -7.07 16 14 N -0.05 -0.84 13.46 37.02 0.50 -0.34 16 15 N -0.19 -1.97 7.90 37.02 0.29 -1.68 16 16 H 0.50 -0.13 8.96 -347.51 -3.12 -3.25 16 17 N -0.27 -4.21 12.39 -52.35 -0.65 -4.86 16 18 N -0.51 -12.07 4.82 -172.29 -0.83 -12.90 16 19 H 0.43 9.44 6.22 -92.71 -0.58 8.86 16 20 C 0.08 2.52 5.05 86.41 0.44 2.96 16 21 C 0.15 5.80 3.23 45.03 0.15 5.95 16 22 H 0.01 0.58 7.38 -2.38 -0.02 0.57 16 23 C -0.13 -4.18 8.05 71.98 0.58 -3.60 16 24 N -0.59 -27.32 2.65 -649.90 -1.72 -29.04 16 25 C -0.26 -12.86 8.29 84.03 0.70 -12.17 16 26 H 0.07 3.41 6.52 -2.91 -0.02 3.39 16 27 C -0.03 -1.83 5.20 84.86 0.44 -1.39 16 28 N -0.92 -51.10 9.79 21.65 0.21 -50.89 16 29 Si 0.96 42.94 29.55 68.60 2.03 44.97 16 30 H -0.29 -13.00 7.11 99.48 0.71 -12.29 16 31 H -0.27 -11.55 7.11 99.48 0.71 -10.85 16 32 H -0.30 -13.73 7.11 99.48 0.71 -13.02 16 33 H 0.05 2.48 6.93 -2.39 -0.02 2.46 16 34 H 0.03 1.52 8.14 -2.38 -0.02 1.50 16 35 H 0.02 0.96 7.00 -2.38 -0.02 0.94 16 36 H 0.07 2.54 8.14 -2.38 -0.02 2.52 16 37 H 0.08 3.19 6.97 -2.39 -0.02 3.17 16 38 H 0.16 3.62 8.06 -2.91 -0.02 3.60 16 39 H 0.18 2.50 8.06 -2.91 -0.02 2.47 16 40 H 0.08 2.42 8.12 -2.39 -0.02 2.40 16 41 H 0.10 2.59 3.68 -2.39 -0.01 2.58 16 42 H 0.05 1.74 7.71 -2.39 -0.02 1.72 16 43 H 0.07 1.91 8.14 -2.39 -0.02 1.89 16 44 H 0.06 1.94 7.36 -2.39 -0.02 1.92 16 45 H 0.25 13.59 8.31 -92.71 -0.77 12.82 16 Total: -1.00 -67.76 363.39 0.74 -67.03 By element: Atomic # 1 Polarization: 19.88 SS G_CDS: -2.61 Total: 17.27 kcal Atomic # 6 Polarization: 17.28 SS G_CDS: 6.38 Total: 23.66 kcal Atomic # 7 Polarization: -124.68 SS G_CDS: -4.99 Total: -129.67 kcal Atomic # 8 Polarization: -23.18 SS G_CDS: -0.07 Total: -23.25 kcal Atomic # 14 Polarization: 42.94 SS G_CDS: 2.03 Total: 44.97 kcal Total: -67.76 0.74 -67.03 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001603927966.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 233.624 kcal (2) G-P(sol) polarization free energy of solvation -67.764 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 165.860 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.739 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.026 kcal (6) G-S(sol) free energy of system = (1) + (5) 166.599 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds