Wall clock time and date at job start Wed Apr 1 2020 04:33:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.31003 * 120.00434 * 2 1 4 4 C 1.50694 * 120.00313 * 179.97438 * 3 2 1 5 5 C 1.52999 * 109.47078 * 125.00411 * 4 3 2 6 6 H 1.08998 * 109.46976 * 304.99702 * 5 4 3 7 7 N 1.46503 * 109.47420 * 64.99679 * 5 4 3 8 8 C 1.34774 * 119.99940 * 204.99835 * 7 5 4 9 9 O 1.21282 * 120.00180 * 0.02562 * 8 7 5 10 10 C 1.50701 * 119.99811 * 180.02562 * 8 7 5 11 11 C 1.50697 * 109.47289 * 180.02562 * 10 8 7 12 12 C 1.37636 * 120.12969 * 265.00142 * 11 10 8 13 13 C 1.38613 * 120.24830 * 179.97438 * 12 11 10 14 14 C 1.38663 * 120.50067 * 0.02562 * 13 12 11 15 15 C 1.37595 * 120.24656 * 0.02562 * 14 13 12 16 16 C 1.40704 * 120.12511 * 84.72777 * 11 10 8 17 17 C 1.41397 * 120.24192 * 359.97438 * 16 11 10 18 18 H 1.07991 * 120.00679 * 329.70843 * 17 16 11 19 19 C 1.39947 * 119.99482 * 149.70288 * 17 16 11 20 20 N 1.30827 * 120.00087 * 162.01891 * 19 17 16 21 21 Si 1.86800 * 120.00262 * 342.01944 * 19 17 16 22 22 H 1.48499 * 109.47438 * 95.39864 * 21 19 17 23 23 H 1.48499 * 109.47318 * 215.39957 * 21 19 17 24 24 H 1.48503 * 109.47069 * 335.40075 * 21 19 17 25 25 C 1.50703 * 109.47327 * 185.00137 * 5 4 3 26 26 O 1.20822 * 120.00145 * 240.00238 * 25 5 4 27 27 O 1.34234 * 119.99931 * 59.99395 * 25 5 4 28 28 C 1.45196 * 116.99692 * 180.02562 * 27 25 5 29 29 C 1.53001 * 109.46681 * 179.97438 * 28 27 25 30 30 H 1.09003 * 109.47299 * 300.00279 * 1 2 3 31 31 H 1.09009 * 109.46571 * 59.99886 * 1 2 3 32 32 H 1.08997 * 109.47517 * 179.97438 * 1 2 3 33 33 H 1.08002 * 120.00178 * 179.97438 * 2 1 3 34 34 H 1.08005 * 119.99595 * 0.27787 * 3 2 1 35 35 H 1.09005 * 109.46948 * 244.99918 * 4 3 2 36 36 H 1.08998 * 109.47447 * 5.00009 * 4 3 2 37 37 H 0.97000 * 119.99353 * 25.00379 * 7 5 4 38 38 H 1.09005 * 109.47150 * 300.00476 * 10 8 7 39 39 H 1.09005 * 109.46944 * 59.99997 * 10 8 7 40 40 H 1.07995 * 119.87658 * 0.02562 * 12 11 10 41 41 H 1.07998 * 119.74786 * 180.02562 * 13 12 11 42 42 H 1.07999 * 119.87360 * 180.02562 * 14 13 12 43 43 H 1.08008 * 120.12073 * 179.97438 * 15 14 13 44 44 H 0.96995 * 120.00384 * 180.02562 * 20 19 17 45 45 H 1.08995 * 109.47663 * 300.00012 * 28 27 25 46 46 H 1.09003 * 109.47185 * 60.00508 * 28 27 25 47 47 H 1.08995 * 109.47745 * 299.99985 * 29 28 27 48 48 H 1.09003 * 109.46876 * 60.00344 * 29 28 27 49 49 H 1.08999 * 109.46865 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1621 1.1345 0.0000 4 6 3.6690 1.1344 0.0006 5 6 4.1795 1.9616 -1.1810 6 1 3.7452 1.5811 -2.1054 7 7 3.7918 3.3628 -0.9999 8 6 3.6655 4.1708 -2.0712 9 8 3.8722 3.7379 -3.1851 10 6 3.2673 5.6123 -1.8849 11 6 3.1969 6.2916 -3.2282 12 6 4.2798 6.9953 -3.7041 13 6 4.2179 7.6207 -4.9396 14 6 3.0670 7.5459 -5.7094 15 6 1.9720 6.8488 -5.2531 16 6 2.0258 6.2042 -4.0033 17 6 0.9093 5.4787 -3.5273 18 1 1.0548 4.6278 -2.8786 19 6 -0.3844 5.8637 -3.8970 20 7 -1.3792 5.0242 -3.7659 21 14 -0.6909 7.5760 -4.5776 22 1 -0.6718 7.5296 -6.0617 23 1 -2.0151 8.0631 -4.1146 24 1 0.3707 8.4968 -4.0976 25 6 5.6814 1.8612 -1.2529 26 8 6.3586 2.8577 -1.1622 27 8 6.2669 0.6646 -1.4177 28 6 7.7175 0.6432 -1.4777 29 6 8.1989 -0.7968 -1.6665 30 1 -0.3634 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8901 32 1 -0.3634 -1.0276 -0.0005 33 1 2.0470 -0.9353 0.0004 34 1 1.6220 2.0698 0.0045 35 1 4.0320 1.5690 0.9321 36 1 4.0324 0.1107 -0.0886 37 1 3.6262 3.7089 -0.1091 38 1 2.2911 5.6601 -1.4023 39 1 4.0060 6.1156 -1.2611 40 1 5.1814 7.0597 -3.1132 41 1 5.0725 8.1703 -5.3054 42 1 3.0300 8.0366 -6.6708 43 1 1.0764 6.7922 -5.8542 44 1 -2.2759 5.2908 -4.0224 45 1 8.0556 1.2525 -2.3158 46 1 8.1255 1.0435 -0.5496 47 1 7.8609 -1.4058 -0.8281 48 1 7.7909 -1.1975 -2.5945 49 1 9.2878 -0.8128 -1.7120 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001638292316.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:33:52 Heat of formation + Delta-G solvation = -101.198545 kcal Electronic energy + Delta-G solvation = -30454.438774 eV Core-core repulsion = 26346.222423 eV Total energy + Delta-G solvation = -4108.216351 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.177 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -40.70916 -39.19583 -37.70423 -36.63189 -36.27085 -34.06499 -33.53944 -32.11855 -31.78531 -30.66567 -30.24880 -27.69651 -26.49251 -24.76650 -24.01805 -22.81614 -21.49437 -21.10400 -20.37256 -19.49911 -19.39983 -17.77854 -17.30128 -16.88991 -16.59050 -16.31675 -15.85480 -15.36111 -14.73311 -14.71562 -14.34011 -14.08212 -14.01171 -13.64552 -13.61486 -13.31793 -13.25542 -13.03933 -12.94697 -12.64136 -12.33534 -12.12017 -12.01089 -11.85557 -11.82293 -11.74277 -11.55592 -11.36148 -11.18996 -11.10810 -10.76268 -10.68430 -10.62654 -10.46478 -10.20474 -9.66054 -9.51924 -9.26302 -9.08629 -9.06033 -8.85374 -7.53903 -7.44932 -6.89419 -4.42818 2.08644 2.28545 2.47887 2.63442 2.77621 3.16012 3.23078 3.35735 3.37639 3.57800 4.02971 4.49598 4.56954 4.69768 4.75220 4.80040 4.91638 4.97339 5.08638 5.16377 5.33767 5.40497 5.48855 5.56312 5.57727 5.66684 5.70902 5.74716 5.75473 5.81547 5.93147 6.03241 6.07327 6.15895 6.25034 6.33109 6.38161 6.57033 6.64094 6.68088 6.78186 6.79071 7.00766 7.26233 7.48101 7.71994 7.77545 7.79222 7.86201 7.96490 8.20104 8.40748 8.73669 8.80121 8.87662 10.12677 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.009775 B = 0.003617 C = 0.002799 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2863.726882 B = 7738.727360 C =10002.762024 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.152 4.152 3 C -0.162 4.162 4 C -0.087 4.087 5 C 0.164 3.836 6 H 0.127 0.873 7 N -0.721 5.721 8 C 0.525 3.475 9 O -0.516 6.516 10 C -0.072 4.072 11 C -0.166 4.166 12 C -0.068 4.068 13 C -0.242 4.242 14 C -0.080 4.080 15 C -0.234 4.234 16 C 0.110 3.890 17 C -0.444 4.444 18 H 0.089 0.911 19 C 0.086 3.914 20 N -0.810 5.810 21 Si 0.908 3.092 22 H -0.272 1.272 23 H -0.293 1.293 24 H -0.244 1.244 25 C 0.449 3.551 26 O -0.496 6.496 27 O -0.359 6.359 28 C 0.061 3.939 29 C -0.151 4.151 30 H 0.064 0.936 31 H 0.071 0.929 32 H 0.058 0.942 33 H 0.107 0.893 34 H 0.118 0.882 35 H 0.081 0.919 36 H 0.092 0.908 37 H 0.403 0.597 38 H 0.102 0.898 39 H 0.081 0.919 40 H 0.091 0.909 41 H 0.091 0.909 42 H 0.091 0.909 43 H 0.099 0.901 44 H 0.283 0.717 45 H 0.069 0.931 46 H 0.067 0.933 47 H 0.066 0.934 48 H 0.067 0.933 49 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.574 -9.956 10.524 16.834 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.170 4.170 3 C -0.180 4.180 4 C -0.125 4.125 5 C 0.056 3.944 6 H 0.145 0.855 7 N -0.376 5.376 8 C 0.313 3.687 9 O -0.389 6.389 10 C -0.111 4.111 11 C -0.168 4.168 12 C -0.086 4.086 13 C -0.261 4.261 14 C -0.099 4.099 15 C -0.253 4.253 16 C 0.107 3.893 17 C -0.472 4.472 18 H 0.107 0.893 19 C -0.133 4.133 20 N -0.435 5.435 21 Si 0.735 3.265 22 H -0.198 1.198 23 H -0.221 1.221 24 H -0.167 1.167 25 C 0.290 3.710 26 O -0.381 6.381 27 O -0.276 6.276 28 C -0.013 4.013 29 C -0.208 4.208 30 H 0.083 0.917 31 H 0.090 0.910 32 H 0.077 0.923 33 H 0.125 0.875 34 H 0.135 0.865 35 H 0.099 0.901 36 H 0.110 0.890 37 H 0.238 0.762 38 H 0.120 0.880 39 H 0.099 0.901 40 H 0.109 0.891 41 H 0.110 0.890 42 H 0.110 0.890 43 H 0.117 0.883 44 H 0.093 0.907 45 H 0.087 0.913 46 H 0.086 0.914 47 H 0.085 0.915 48 H 0.086 0.914 49 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 8.690 -10.080 9.715 16.478 hybrid contribution -0.075 0.858 -0.069 0.864 sum 8.615 -9.222 9.646 15.884 Atomic orbital electron populations 1.20871 0.92917 1.02132 1.02584 1.22871 0.96419 0.97659 1.00083 1.22667 0.94255 0.99109 1.01981 1.20878 0.94414 1.00735 0.96474 1.20343 0.86116 0.84977 1.02924 0.85543 1.45895 1.71954 1.09046 1.10721 1.21192 0.75181 0.88533 0.83800 1.90693 1.47881 1.75978 1.24338 1.20275 1.02885 0.89897 0.98076 1.19059 0.96554 1.05649 0.95532 1.20456 0.95891 0.96877 0.95406 1.20335 0.98311 1.09823 0.97607 1.20597 0.93867 0.97814 0.97582 1.20994 0.98548 1.07848 0.97895 1.17482 0.92510 0.89254 0.90047 1.19390 0.88937 1.12272 1.26649 0.89287 1.26132 0.95929 0.99118 0.92103 1.69702 1.01747 1.35397 1.36637 0.86365 0.77523 0.83190 0.79407 1.19812 1.22054 1.16688 1.24566 0.92764 0.81194 0.72515 1.90657 1.65445 1.37373 1.44649 1.86500 1.23766 1.34001 1.83337 1.22998 0.77042 0.98899 1.02408 1.21797 1.01178 0.94470 1.03387 0.91720 0.90990 0.92309 0.87509 0.86456 0.90089 0.88953 0.76250 0.87996 0.90081 0.89073 0.89040 0.89036 0.88342 0.90664 0.91253 0.91428 0.91538 0.91374 0.90374 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.32 10.17 36.00 0.37 -0.96 16 2 C -0.15 -1.59 9.87 -36.03 -0.36 -1.94 16 3 C -0.16 -1.79 8.89 -36.03 -0.32 -2.11 16 4 C -0.09 -0.88 5.16 -27.89 -0.14 -1.03 16 5 C 0.16 2.30 2.47 -69.08 -0.17 2.13 16 6 H 0.13 2.02 7.58 -51.93 -0.39 1.62 16 7 N -0.72 -10.90 4.30 -54.93 -0.24 -11.14 16 8 C 0.52 10.47 7.25 -10.99 -0.08 10.39 16 9 O -0.52 -12.65 15.70 5.56 0.09 -12.57 16 10 C -0.07 -1.40 5.19 -29.04 -0.15 -1.55 16 11 C -0.17 -3.92 4.43 -103.91 -0.46 -4.38 16 12 C -0.07 -1.53 9.66 -39.66 -0.38 -1.91 16 13 C -0.24 -5.39 10.05 -39.29 -0.39 -5.78 16 14 C -0.08 -1.86 10.02 -39.66 -0.40 -2.26 16 15 C -0.23 -5.93 7.17 -38.88 -0.28 -6.21 16 16 C 0.11 2.85 5.10 -106.82 -0.54 2.31 16 17 C -0.44 -11.89 8.56 -37.74 -0.32 -12.21 16 18 H 0.09 2.48 6.99 -52.49 -0.37 2.11 16 19 C 0.09 2.24 5.41 -17.34 -0.09 2.14 16 20 N -0.81 -21.43 13.93 55.55 0.77 -20.66 16 21 Si 0.91 20.98 24.52 -169.99 -4.17 16.81 16 22 H -0.27 -6.21 6.71 56.52 0.38 -5.83 16 23 H -0.29 -6.49 7.11 56.52 0.40 -6.09 16 24 H -0.24 -5.75 6.85 56.52 0.39 -5.36 16 25 C 0.45 6.80 7.29 36.01 0.26 7.07 16 26 O -0.50 -8.93 16.07 -18.75 -0.30 -9.23 16 27 O -0.36 -4.68 10.03 -39.27 -0.39 -5.07 16 28 C 0.06 0.65 6.19 37.16 0.23 0.88 16 29 C -0.15 -1.13 10.29 37.16 0.38 -0.75 16 30 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.07 0.86 8.14 -51.92 -0.42 0.44 16 32 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 33 H 0.11 0.95 7.84 -52.49 -0.41 0.54 16 34 H 0.12 1.43 8.03 -52.48 -0.42 1.00 16 35 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 36 H 0.09 0.82 7.65 -51.93 -0.40 0.43 16 37 H 0.40 4.78 8.60 -40.82 -0.35 4.43 16 38 H 0.10 1.92 7.15 -51.93 -0.37 1.55 16 39 H 0.08 1.34 8.05 -51.93 -0.42 0.92 16 40 H 0.09 1.83 8.06 -52.49 -0.42 1.41 16 41 H 0.09 1.79 8.06 -52.49 -0.42 1.37 16 42 H 0.09 1.85 8.06 -52.49 -0.42 1.43 16 43 H 0.10 2.48 4.74 -52.48 -0.25 2.24 16 44 H 0.28 6.83 8.30 -40.82 -0.34 6.49 16 45 H 0.07 0.81 8.13 -51.93 -0.42 0.38 16 46 H 0.07 0.68 8.13 -51.93 -0.42 0.26 16 47 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 48 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 49 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 LS Contribution 410.74 15.07 6.19 6.19 Total: -1.00 -33.28 410.74 -8.53 -41.81 By element: Atomic # 1 Polarization: 17.67 SS G_CDS: -7.62 Total: 10.05 kcal Atomic # 6 Polarization: -13.33 SS G_CDS: -2.86 Total: -16.18 kcal Atomic # 7 Polarization: -32.34 SS G_CDS: 0.54 Total: -31.80 kcal Atomic # 8 Polarization: -26.27 SS G_CDS: -0.61 Total: -26.87 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -4.17 Total: 16.81 kcal Total LS contribution 6.19 Total: 6.19 kcal Total: -33.28 -8.53 -41.81 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001638292316.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.388 kcal (2) G-P(sol) polarization free energy of solvation -33.283 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.671 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.528 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.810 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.199 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds