Wall clock time and date at job start Wed Apr 1 2020 04:33:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.31003 * 120.00434 * 2 1 4 4 C 1.50694 * 120.00313 * 179.97438 * 3 2 1 5 5 C 1.52999 * 109.47078 * 125.00411 * 4 3 2 6 6 H 1.08998 * 109.46976 * 304.99702 * 5 4 3 7 7 N 1.46503 * 109.47420 * 64.99679 * 5 4 3 8 8 C 1.34774 * 119.99940 * 204.99835 * 7 5 4 9 9 O 1.21282 * 120.00180 * 0.02562 * 8 7 5 10 10 C 1.50701 * 119.99811 * 180.02562 * 8 7 5 11 11 C 1.50697 * 109.47289 * 180.02562 * 10 8 7 12 12 C 1.37636 * 120.12969 * 265.00142 * 11 10 8 13 13 C 1.38613 * 120.24830 * 179.97438 * 12 11 10 14 14 C 1.38663 * 120.50067 * 0.02562 * 13 12 11 15 15 C 1.37595 * 120.24656 * 0.02562 * 14 13 12 16 16 C 1.40704 * 120.12511 * 84.72777 * 11 10 8 17 17 C 1.41397 * 120.24192 * 359.97438 * 16 11 10 18 18 H 1.07991 * 120.00679 * 329.70843 * 17 16 11 19 19 C 1.39947 * 119.99482 * 149.70288 * 17 16 11 20 20 N 1.30827 * 120.00087 * 162.01891 * 19 17 16 21 21 Si 1.86800 * 120.00262 * 342.01944 * 19 17 16 22 22 H 1.48499 * 109.47438 * 95.39864 * 21 19 17 23 23 H 1.48499 * 109.47318 * 215.39957 * 21 19 17 24 24 H 1.48503 * 109.47069 * 335.40075 * 21 19 17 25 25 C 1.50703 * 109.47327 * 185.00137 * 5 4 3 26 26 O 1.20822 * 120.00145 * 240.00238 * 25 5 4 27 27 O 1.34234 * 119.99931 * 59.99395 * 25 5 4 28 28 C 1.45196 * 116.99692 * 180.02562 * 27 25 5 29 29 C 1.53001 * 109.46681 * 179.97438 * 28 27 25 30 30 H 1.09003 * 109.47299 * 300.00279 * 1 2 3 31 31 H 1.09009 * 109.46571 * 59.99886 * 1 2 3 32 32 H 1.08997 * 109.47517 * 179.97438 * 1 2 3 33 33 H 1.08002 * 120.00178 * 179.97438 * 2 1 3 34 34 H 1.08005 * 119.99595 * 0.27787 * 3 2 1 35 35 H 1.09005 * 109.46948 * 244.99918 * 4 3 2 36 36 H 1.08998 * 109.47447 * 5.00009 * 4 3 2 37 37 H 0.97000 * 119.99353 * 25.00379 * 7 5 4 38 38 H 1.09005 * 109.47150 * 300.00476 * 10 8 7 39 39 H 1.09005 * 109.46944 * 59.99997 * 10 8 7 40 40 H 1.07995 * 119.87658 * 0.02562 * 12 11 10 41 41 H 1.07998 * 119.74786 * 180.02562 * 13 12 11 42 42 H 1.07999 * 119.87360 * 180.02562 * 14 13 12 43 43 H 1.08008 * 120.12073 * 179.97438 * 15 14 13 44 44 H 0.96995 * 120.00384 * 180.02562 * 20 19 17 45 45 H 1.08995 * 109.47663 * 300.00012 * 28 27 25 46 46 H 1.09003 * 109.47185 * 60.00508 * 28 27 25 47 47 H 1.08995 * 109.47745 * 299.99985 * 29 28 27 48 48 H 1.09003 * 109.46876 * 60.00344 * 29 28 27 49 49 H 1.08999 * 109.46865 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1621 1.1345 0.0000 4 6 3.6690 1.1344 0.0006 5 6 4.1795 1.9616 -1.1810 6 1 3.7452 1.5811 -2.1054 7 7 3.7918 3.3628 -0.9999 8 6 3.6655 4.1708 -2.0712 9 8 3.8722 3.7379 -3.1851 10 6 3.2673 5.6123 -1.8849 11 6 3.1969 6.2916 -3.2282 12 6 4.2798 6.9953 -3.7041 13 6 4.2179 7.6207 -4.9396 14 6 3.0670 7.5459 -5.7094 15 6 1.9720 6.8488 -5.2531 16 6 2.0258 6.2042 -4.0033 17 6 0.9093 5.4787 -3.5273 18 1 1.0548 4.6278 -2.8786 19 6 -0.3844 5.8637 -3.8970 20 7 -1.3792 5.0242 -3.7659 21 14 -0.6909 7.5760 -4.5776 22 1 -0.6718 7.5296 -6.0617 23 1 -2.0151 8.0631 -4.1146 24 1 0.3707 8.4968 -4.0976 25 6 5.6814 1.8612 -1.2529 26 8 6.3586 2.8577 -1.1622 27 8 6.2669 0.6646 -1.4177 28 6 7.7175 0.6432 -1.4777 29 6 8.1989 -0.7968 -1.6665 30 1 -0.3634 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8901 32 1 -0.3634 -1.0276 -0.0005 33 1 2.0470 -0.9353 0.0004 34 1 1.6220 2.0698 0.0045 35 1 4.0320 1.5690 0.9321 36 1 4.0324 0.1107 -0.0886 37 1 3.6262 3.7089 -0.1091 38 1 2.2911 5.6601 -1.4023 39 1 4.0060 6.1156 -1.2611 40 1 5.1814 7.0597 -3.1132 41 1 5.0725 8.1703 -5.3054 42 1 3.0300 8.0366 -6.6708 43 1 1.0764 6.7922 -5.8542 44 1 -2.2759 5.2908 -4.0224 45 1 8.0556 1.2525 -2.3158 46 1 8.1255 1.0435 -0.5496 47 1 7.8609 -1.4058 -0.8281 48 1 7.7909 -1.1975 -2.5945 49 1 9.2878 -0.8128 -1.7120 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001638292316.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:33:50 Heat of formation + Delta-G solvation = -120.367131 kcal Electronic energy + Delta-G solvation = -30455.269986 eV Core-core repulsion = 26346.222423 eV Total energy + Delta-G solvation = -4109.047563 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.177 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -41.92788 -40.70967 -39.38754 -37.86201 -37.35417 -35.47378 -35.24910 -33.65223 -32.78800 -32.17144 -31.74476 -28.99821 -27.91314 -26.61788 -24.90607 -23.73334 -23.23885 -22.59897 -21.70317 -21.08023 -20.38082 -19.24336 -18.94054 -18.17365 -17.87538 -17.58038 -17.45784 -16.76603 -16.41784 -16.06083 -15.64766 -15.47442 -15.21592 -15.00479 -14.94298 -14.72141 -14.52369 -14.38799 -14.05972 -13.87399 -13.73626 -13.62924 -13.20745 -13.13329 -12.88213 -12.84278 -12.72636 -12.67326 -12.59960 -12.51057 -12.43974 -12.06667 -11.99392 -11.68029 -11.56907 -11.53030 -11.37681 -10.96945 -10.90621 -10.31686 -9.85620 -9.40342 -9.29653 -8.84845 -6.42738 0.78617 0.89914 1.00922 1.23046 1.28488 1.40102 1.43605 1.50351 1.87428 2.15399 2.28205 2.65923 3.47803 3.55738 3.72625 3.91825 3.97565 4.02811 4.05849 4.08348 4.26700 4.30316 4.31804 4.37411 4.45279 4.55834 4.57670 4.69782 4.72144 4.78582 4.82985 4.86375 4.91020 4.93310 4.96136 4.98793 5.10672 5.16565 5.19529 5.29617 5.38180 5.38402 5.67397 5.81280 5.87052 5.93835 5.95110 6.05837 6.29958 6.44965 6.52278 6.61395 6.81452 6.92180 7.30935 8.22430 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.009775 B = 0.003617 C = 0.002799 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2863.726882 B = 7738.727360 C =10002.762024 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.148 4.148 3 C -0.177 4.177 4 C -0.072 4.072 5 C 0.163 3.837 6 H 0.104 0.896 7 N -0.704 5.704 8 C 0.525 3.475 9 O -0.571 6.571 10 C -0.073 4.073 11 C -0.172 4.172 12 C -0.081 4.081 13 C -0.232 4.232 14 C -0.090 4.090 15 C -0.257 4.257 16 C 0.086 3.914 17 C -0.466 4.466 18 H 0.061 0.939 19 C 0.052 3.948 20 N -0.847 5.847 21 Si 0.959 3.041 22 H -0.269 1.269 23 H -0.278 1.278 24 H -0.252 1.252 25 C 0.453 3.547 26 O -0.528 6.528 27 O -0.356 6.356 28 C 0.051 3.949 29 C -0.144 4.144 30 H 0.069 0.931 31 H 0.047 0.953 32 H 0.075 0.925 33 H 0.129 0.871 34 H 0.100 0.900 35 H 0.103 0.897 36 H 0.112 0.888 37 H 0.420 0.580 38 H 0.103 0.897 39 H 0.116 0.884 40 H 0.119 0.881 41 H 0.125 0.875 42 H 0.122 0.878 43 H 0.092 0.908 44 H 0.291 0.709 45 H 0.055 0.945 46 H 0.075 0.925 47 H 0.077 0.923 48 H 0.064 0.936 49 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.458 -9.955 11.568 18.501 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.166 4.166 3 C -0.195 4.195 4 C -0.110 4.110 5 C 0.055 3.945 6 H 0.122 0.878 7 N -0.359 5.359 8 C 0.314 3.686 9 O -0.448 6.448 10 C -0.112 4.112 11 C -0.174 4.174 12 C -0.099 4.099 13 C -0.251 4.251 14 C -0.108 4.108 15 C -0.276 4.276 16 C 0.083 3.917 17 C -0.496 4.496 18 H 0.080 0.920 19 C -0.163 4.163 20 N -0.473 5.473 21 Si 0.784 3.216 22 H -0.195 1.195 23 H -0.204 1.204 24 H -0.175 1.175 25 C 0.295 3.705 26 O -0.417 6.417 27 O -0.272 6.272 28 C -0.022 4.022 29 C -0.201 4.201 30 H 0.088 0.912 31 H 0.066 0.934 32 H 0.095 0.905 33 H 0.147 0.853 34 H 0.118 0.882 35 H 0.121 0.879 36 H 0.131 0.869 37 H 0.258 0.742 38 H 0.121 0.879 39 H 0.134 0.866 40 H 0.137 0.863 41 H 0.143 0.857 42 H 0.140 0.860 43 H 0.110 0.890 44 H 0.101 0.899 45 H 0.073 0.927 46 H 0.094 0.906 47 H 0.096 0.904 48 H 0.083 0.917 49 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 10.570 -10.107 10.814 18.188 hybrid contribution -0.466 0.807 -0.386 1.009 sum 10.104 -9.300 10.427 17.243 Atomic orbital electron populations 1.20903 0.93215 1.03015 1.01673 1.23092 0.96434 0.98332 0.98746 1.22648 0.94853 0.98746 1.03230 1.20855 0.93497 1.01129 0.95476 1.20475 0.85854 0.84386 1.03793 0.87842 1.45652 1.70343 1.09367 1.10492 1.21206 0.74512 0.89028 0.83877 1.90663 1.50735 1.76951 1.26490 1.20329 1.04083 0.89960 0.96837 1.19515 0.95996 1.05090 0.96792 1.20872 0.96519 0.96423 0.96091 1.20836 0.98857 1.08393 0.97044 1.20967 0.93369 0.97514 0.98995 1.21152 0.99457 1.09076 0.97949 1.17718 0.93225 0.89888 0.90855 1.19312 0.90111 1.12462 1.27728 0.92046 1.26711 0.95523 1.01722 0.92343 1.69728 1.02367 1.36762 1.38485 0.85579 0.77629 0.79532 0.78876 1.19535 1.20417 1.17545 1.24615 0.92909 0.81319 0.71638 1.90637 1.66184 1.38430 1.46410 1.86498 1.25355 1.32679 1.82650 1.23319 0.75539 1.01070 1.02295 1.21820 1.02474 0.92122 1.03660 0.91178 0.93393 0.90547 0.85316 0.88232 0.87894 0.86939 0.74228 0.87875 0.86591 0.86331 0.85656 0.86050 0.89001 0.89882 0.92681 0.90628 0.90381 0.91723 0.88128 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.68 10.17 71.23 0.72 -1.96 16 2 C -0.15 -2.93 9.87 25.64 0.25 -2.68 16 3 C -0.18 -3.82 8.89 25.64 0.23 -3.59 16 4 C -0.07 -1.35 5.16 29.85 0.15 -1.20 16 5 C 0.16 4.53 2.47 44.25 0.11 4.64 16 6 H 0.10 3.44 7.58 -2.39 -0.02 3.42 16 7 N -0.70 -21.35 4.30 -446.09 -1.92 -23.27 16 8 C 0.52 21.35 7.25 87.66 0.64 21.98 16 9 O -0.57 -29.01 15.70 -3.04 -0.05 -29.05 16 10 C -0.07 -2.83 5.19 29.10 0.15 -2.68 16 11 C -0.17 -8.10 4.43 -19.41 -0.09 -8.18 16 12 C -0.08 -3.49 9.66 22.22 0.21 -3.28 16 13 C -0.23 -9.74 10.05 22.46 0.23 -9.52 16 14 C -0.09 -4.03 10.02 22.22 0.22 -3.80 16 15 C -0.26 -13.07 7.17 22.73 0.16 -12.91 16 16 C 0.09 4.53 5.10 -21.29 -0.11 4.42 16 17 C -0.47 -26.13 8.56 23.46 0.20 -25.93 16 18 H 0.06 3.66 6.99 -2.92 -0.02 3.64 16 19 C 0.05 2.78 5.41 85.26 0.46 3.24 16 20 N -0.85 -46.52 13.93 21.83 0.30 -46.21 16 21 Si 0.96 43.91 24.52 68.60 1.68 45.60 16 22 H -0.27 -12.07 6.71 99.48 0.67 -11.40 16 23 H -0.28 -11.82 7.11 99.48 0.71 -11.11 16 24 H -0.25 -11.72 6.85 99.48 0.68 -11.04 16 25 C 0.45 13.51 7.29 71.24 0.52 14.03 16 26 O -0.53 -18.84 16.07 21.98 0.35 -18.49 16 27 O -0.36 -8.90 10.03 -51.46 -0.52 -9.42 16 28 C 0.05 1.04 6.19 71.98 0.45 1.48 16 29 C -0.14 -1.83 10.29 71.98 0.74 -1.09 16 30 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 31 H 0.05 1.21 8.14 -2.38 -0.02 1.19 16 32 H 0.08 1.26 8.14 -2.39 -0.02 1.25 16 33 H 0.13 1.98 7.84 -2.91 -0.02 1.95 16 34 H 0.10 2.50 8.03 -2.91 -0.02 2.48 16 35 H 0.10 1.51 8.14 -2.38 -0.02 1.49 16 36 H 0.11 1.71 7.65 -2.39 -0.02 1.69 16 37 H 0.42 9.67 8.60 -92.71 -0.80 8.87 16 38 H 0.10 3.98 7.15 -2.38 -0.02 3.96 16 39 H 0.12 3.62 8.05 -2.38 -0.02 3.60 16 40 H 0.12 4.41 8.06 -2.91 -0.02 4.38 16 41 H 0.13 4.38 8.06 -2.91 -0.02 4.35 16 42 H 0.12 4.58 8.06 -2.91 -0.02 4.56 16 43 H 0.09 4.69 4.74 -2.91 -0.01 4.67 16 44 H 0.29 14.45 8.30 -92.71 -0.77 13.68 16 45 H 0.05 1.27 8.13 -2.39 -0.02 1.25 16 46 H 0.08 1.41 8.13 -2.39 -0.02 1.39 16 47 H 0.08 0.84 8.14 -2.39 -0.02 0.82 16 48 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 49 H 0.10 0.85 8.14 -2.39 -0.02 0.83 16 Total: -1.00 -74.97 410.74 5.20 -69.77 By element: Atomic # 1 Polarization: 38.00 SS G_CDS: 0.09 Total: 38.10 kcal Atomic # 6 Polarization: -32.27 SS G_CDS: 5.25 Total: -27.02 kcal Atomic # 7 Polarization: -67.87 SS G_CDS: -1.62 Total: -69.49 kcal Atomic # 8 Polarization: -56.75 SS G_CDS: -0.21 Total: -56.96 kcal Atomic # 14 Polarization: 43.91 SS G_CDS: 1.68 Total: 45.60 kcal Total: -74.97 5.20 -69.77 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001638292316.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.596 kcal (2) G-P(sol) polarization free energy of solvation -74.971 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.567 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.200 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.771 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.367 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds