Wall clock time and date at job start Wed Apr 1 2020 04:38:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 O 1.21285 * 119.99820 * 2 1 4 4 N 1.34779 * 120.00369 * 180.02562 * 2 1 3 5 5 C 1.46500 * 119.99880 * 185.14757 * 4 2 1 6 6 C 1.53001 * 109.46844 * 269.99368 * 5 4 2 7 7 C 1.50699 * 109.46655 * 180.02562 * 6 5 4 8 8 C 1.38237 * 119.99839 * 269.72538 * 7 6 5 9 9 C 1.38243 * 119.99692 * 179.76886 * 8 7 6 10 10 C 1.38229 * 119.99997 * 0.50719 * 9 8 7 11 11 C 1.38234 * 119.99814 * 359.74970 * 10 9 8 12 12 C 1.38226 * 120.00617 * 359.97438 * 11 10 9 13 13 C 1.46502 * 119.99664 * 5.14474 * 4 2 1 14 14 C 1.50698 * 109.46854 * 274.39419 * 13 4 2 15 15 O 1.20829 * 120.00467 * 0.02562 * 14 13 4 16 16 O 1.34238 * 119.99921 * 179.97438 * 14 13 4 17 17 C 1.45203 * 116.99921 * 179.97438 * 16 14 13 18 18 H 1.08996 * 109.47360 * 330.00514 * 17 16 14 19 19 C 1.50703 * 109.46847 * 210.00266 * 17 16 14 20 20 H 1.07999 * 119.99912 * 0.02562 * 19 17 16 21 21 C 1.37872 * 119.99480 * 180.02562 * 19 17 16 22 22 N 1.31514 * 119.99781 * 180.27300 * 21 19 17 23 23 Si 1.86799 * 120.00522 * 0.02562 * 21 19 17 24 24 H 1.48497 * 109.47153 * 89.99661 * 23 21 19 25 25 H 1.48498 * 109.47475 * 210.00131 * 23 21 19 26 26 H 1.48500 * 109.46732 * 330.00069 * 23 21 19 27 27 C 1.53003 * 109.46743 * 90.00633 * 17 16 14 28 28 C 1.52999 * 117.50122 * 8.74202 * 27 17 16 29 29 C 1.53004 * 117.49835 * 300.08283 * 27 17 16 30 30 H 1.09003 * 109.46974 * 185.21084 * 1 2 3 31 31 H 1.08996 * 109.47025 * 305.20978 * 1 2 3 32 32 H 1.08997 * 109.47150 * 65.21265 * 1 2 3 33 33 H 1.08996 * 109.47314 * 29.99574 * 5 4 2 34 34 H 1.09004 * 109.46401 * 149.99896 * 5 4 2 35 35 H 1.08996 * 109.47334 * 300.00194 * 6 5 4 36 36 H 1.08998 * 109.46853 * 60.00381 * 6 5 4 37 37 H 1.08001 * 120.00393 * 0.02562 * 8 7 6 38 38 H 1.08001 * 119.99319 * 180.23272 * 9 8 7 39 39 H 1.07996 * 119.99719 * 179.72211 * 10 9 8 40 40 H 1.08005 * 119.99484 * 179.97438 * 11 10 9 41 41 H 1.07995 * 120.00932 * 179.97438 * 12 11 10 42 42 H 1.08993 * 109.46688 * 154.39878 * 13 4 2 43 43 H 1.09000 * 109.47056 * 34.39272 * 13 4 2 44 44 H 0.97001 * 120.00763 * 179.72218 * 22 21 19 45 45 H 1.08992 * 115.55003 * 154.41454 * 27 17 16 46 46 H 1.09007 * 117.49593 * 0.02562 * 28 27 17 47 47 H 1.08994 * 117.50147 * 145.01936 * 28 27 17 48 48 H 1.08994 * 117.49958 * 214.98030 * 29 27 17 49 49 H 1.09006 * 117.49737 * 359.97438 * 29 27 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0504 0.0000 4 7 2.1810 -1.1672 -0.0005 5 6 3.6415 -1.1697 0.1133 6 6 4.2620 -1.1053 -1.2838 7 6 5.7644 -1.1085 -1.1666 8 6 6.4522 0.0862 -1.0643 9 6 7.8301 0.0831 -0.9521 10 6 8.5209 -1.1143 -0.9527 11 6 7.8334 -2.3087 -1.0604 12 6 6.4553 -2.3059 -1.1669 13 6 1.4529 -2.4333 -0.1149 14 6 0.9992 -2.8770 1.2520 15 8 1.2571 -2.2044 2.2221 16 8 0.3076 -4.0190 1.3917 17 6 -0.0965 -4.3845 2.7376 18 1 0.6304 -3.9990 3.4525 19 6 -0.1653 -5.8857 2.8512 20 1 0.0714 -6.5032 1.9974 21 6 -0.5305 -6.4706 4.0451 22 7 -0.5854 -7.7807 4.1458 23 14 -0.9405 -5.4024 5.5217 24 1 -2.3919 -5.0882 5.5175 25 1 -0.5950 -6.1292 6.7697 26 1 -0.1607 -4.1406 5.4516 27 6 -1.4727 -3.7867 3.0369 28 6 -2.2288 -3.1379 1.8758 29 6 -1.6113 -2.2644 2.9707 30 1 -0.3633 -1.0235 0.0933 31 1 -0.3633 0.5925 0.8396 32 1 -0.3633 0.4308 -0.9330 33 1 3.9622 -0.3045 0.6935 34 1 3.9654 -2.0827 0.6130 35 1 3.9413 -1.9705 -1.8640 36 1 3.9381 -0.1924 -1.7834 37 1 5.9129 1.0219 -1.0679 38 1 8.3671 1.0164 -0.8684 39 1 9.5976 -1.1165 -0.8695 40 1 8.3732 -3.2442 -1.0613 41 1 5.9182 -3.2390 -1.2514 42 1 2.1078 -3.1914 -0.5441 43 1 0.5845 -2.2962 -0.7592 44 1 -0.8384 -8.1924 4.9869 45 1 -2.0606 -4.3134 3.7885 46 1 -1.7459 -3.1372 0.8985 47 1 -3.3141 -3.2373 1.8637 48 1 -2.2906 -1.7897 3.6786 49 1 -0.7218 -1.6888 2.7144 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001650516579.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:38:11 Heat of formation + Delta-G solvation = -79.763961 kcal Electronic energy + Delta-G solvation = -30594.364978 eV Core-core repulsion = 26487.078101 eV Total energy + Delta-G solvation = -4107.286877 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.177 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -41.92670 -40.83168 -40.04164 -38.52586 -36.95200 -36.54658 -34.89518 -34.41117 -31.76271 -31.37674 -30.93352 -29.65766 -28.29022 -24.95629 -24.70763 -23.47015 -23.35420 -22.98375 -21.92535 -21.27957 -20.18516 -19.06759 -18.61141 -18.45769 -17.76791 -17.65044 -17.39314 -17.13582 -16.56568 -16.12431 -15.93812 -15.81980 -15.56648 -14.90049 -14.80343 -14.65089 -14.43720 -14.32698 -14.13283 -13.99584 -13.65585 -13.62853 -13.41287 -13.37284 -13.20093 -12.99843 -12.86963 -12.69131 -12.38009 -12.18320 -12.12720 -11.97535 -11.91450 -11.72334 -11.62421 -11.44628 -11.04253 -10.99347 -10.76951 -10.61777 -10.12265 -9.81665 -9.53095 -8.43524 -6.50341 0.42250 0.50526 1.20982 1.24667 1.29606 1.32861 1.40748 1.72276 2.17242 2.20119 2.85433 2.88194 3.01360 3.50338 3.73794 3.87425 3.90296 3.92098 4.00802 4.03871 4.12638 4.14238 4.15492 4.20978 4.28023 4.30778 4.40276 4.51107 4.53698 4.60198 4.60300 4.64982 4.76692 4.85285 4.87457 4.95895 4.98895 5.04621 5.15226 5.18287 5.19876 5.27146 5.30547 5.39738 5.58715 5.63482 5.67220 5.71881 6.13115 6.14352 6.17942 6.54633 6.88481 7.01536 7.14593 8.71858 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.012586 B = 0.002864 C = 0.002487 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2224.134899 B = 9774.328349 C =11254.316374 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.518 3.482 3 O -0.580 6.580 4 N -0.595 5.595 5 C 0.125 3.875 6 C -0.081 4.081 7 C -0.093 4.093 8 C -0.131 4.131 9 C -0.129 4.129 10 C -0.131 4.131 11 C -0.128 4.128 12 C -0.125 4.125 13 C 0.119 3.881 14 C 0.425 3.575 15 O -0.533 6.533 16 O -0.343 6.343 17 C 0.236 3.764 18 H 0.026 0.974 19 C -0.527 4.527 20 H 0.053 0.947 21 C 0.034 3.966 22 N -0.929 5.929 23 Si 0.932 3.068 24 H -0.255 1.255 25 H -0.287 1.287 26 H -0.258 1.258 27 C -0.204 4.204 28 C -0.145 4.145 29 C -0.190 4.190 30 H 0.084 0.916 31 H 0.093 0.907 32 H 0.124 0.876 33 H 0.061 0.939 34 H 0.080 0.920 35 H 0.096 0.904 36 H 0.069 0.931 37 H 0.119 0.881 38 H 0.136 0.864 39 H 0.140 0.860 40 H 0.140 0.860 41 H 0.136 0.864 42 H 0.155 0.845 43 H 0.161 0.839 44 H 0.273 0.727 45 H 0.092 0.908 46 H 0.106 0.894 47 H 0.109 0.891 48 H 0.101 0.899 49 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.389 14.189 -14.017 21.637 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.309 3.691 3 O -0.460 6.460 4 N -0.327 5.327 5 C 0.002 3.998 6 C -0.119 4.119 7 C -0.093 4.093 8 C -0.149 4.149 9 C -0.147 4.147 10 C -0.149 4.149 11 C -0.146 4.146 12 C -0.143 4.143 13 C -0.005 4.005 14 C 0.268 3.732 15 O -0.423 6.423 16 O -0.258 6.258 17 C 0.182 3.818 18 H 0.043 0.957 19 C -0.565 4.565 20 H 0.071 0.929 21 C -0.166 4.166 22 N -0.568 5.568 23 Si 0.757 3.243 24 H -0.180 1.180 25 H -0.214 1.214 26 H -0.182 1.182 27 C -0.222 4.222 28 C -0.181 4.181 29 C -0.227 4.227 30 H 0.103 0.897 31 H 0.112 0.888 32 H 0.142 0.858 33 H 0.079 0.921 34 H 0.098 0.902 35 H 0.115 0.885 36 H 0.088 0.912 37 H 0.137 0.863 38 H 0.154 0.846 39 H 0.158 0.842 40 H 0.157 0.843 41 H 0.154 0.846 42 H 0.172 0.828 43 H 0.178 0.822 44 H 0.083 0.917 45 H 0.110 0.890 46 H 0.124 0.876 47 H 0.127 0.873 48 H 0.120 0.880 49 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 8.711 14.750 -13.584 21.862 hybrid contribution -0.099 -0.143 1.500 1.510 sum 8.613 14.607 -12.084 20.822 Atomic orbital electron populations 1.22038 0.89242 1.05411 1.06625 1.21376 0.91861 0.82455 0.73402 1.90678 1.71749 1.32129 1.51400 1.47781 1.07155 1.05362 1.72403 1.21442 0.78241 1.02790 0.97298 1.20834 0.90490 1.04006 0.96592 1.19889 0.95362 0.93643 1.00437 1.21276 0.95021 0.97947 1.00628 1.21421 0.94175 0.99190 0.99892 1.21475 1.01057 0.92455 0.99939 1.21478 0.94470 0.99120 0.99530 1.21343 0.94893 0.97905 1.00173 1.21501 1.01839 0.87392 0.89768 1.25189 0.74918 0.79036 0.94066 1.90628 1.54147 1.55019 1.42534 1.86501 1.65092 1.39211 1.35025 1.19930 0.90651 0.93509 0.77749 0.95671 1.20907 1.47483 0.89454 0.98639 0.92885 1.25441 0.94404 0.95934 1.00804 1.69948 1.48494 1.10664 1.27693 0.86103 0.79962 0.79443 0.78762 1.18049 1.21400 1.18188 1.23145 0.99672 0.95288 1.04111 1.22931 0.99976 1.01304 0.93926 1.23269 1.03595 0.92484 1.03315 0.89694 0.88830 0.85798 0.92077 0.90169 0.88545 0.91245 0.86281 0.84584 0.84180 0.84255 0.84601 0.82795 0.82184 0.91722 0.88989 0.87567 0.87300 0.88050 0.88606 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.20 9.84 71.24 0.70 -2.50 16 2 C 0.52 13.19 7.63 87.66 0.67 13.86 16 3 O -0.58 -19.08 16.73 -3.04 -0.05 -19.13 16 4 N -0.60 -13.49 2.00 -826.15 -1.66 -15.15 16 5 C 0.12 2.86 5.33 86.38 0.46 3.32 16 6 C -0.08 -1.49 5.67 29.85 0.17 -1.32 16 7 C -0.09 -1.83 5.13 -19.86 -0.10 -1.93 16 8 C -0.13 -2.64 9.70 22.27 0.22 -2.43 16 9 C -0.13 -2.28 10.05 22.27 0.22 -2.06 16 10 C -0.13 -2.14 10.05 22.27 0.22 -1.92 16 11 C -0.13 -2.14 10.05 22.27 0.22 -1.92 16 12 C -0.13 -2.26 9.70 22.27 0.22 -2.04 16 13 C 0.12 2.30 5.60 85.63 0.48 2.78 16 14 C 0.43 13.44 6.22 71.24 0.44 13.89 16 15 O -0.53 -20.44 13.39 21.95 0.29 -20.15 16 16 O -0.34 -13.23 8.38 -51.50 -0.43 -13.67 16 17 C 0.24 11.03 2.00 29.85 0.06 11.09 16 18 H 0.03 1.31 6.22 -2.39 -0.01 1.29 16 19 C -0.53 -29.32 9.48 25.60 0.24 -29.08 16 20 H 0.05 3.23 8.06 -2.91 -0.02 3.21 16 21 C 0.03 1.91 5.44 84.65 0.46 2.37 16 22 N -0.93 -55.55 13.96 21.45 0.30 -55.25 16 23 Si 0.93 43.73 24.48 68.60 1.68 45.40 16 24 H -0.26 -11.13 6.72 99.48 0.67 -10.46 16 25 H -0.29 -13.28 7.11 99.48 0.71 -12.57 16 26 H -0.26 -12.01 6.53 99.48 0.65 -11.36 16 27 C -0.20 -8.38 4.45 -10.79 -0.05 -8.43 16 28 C -0.14 -4.52 9.80 30.62 0.30 -4.22 16 29 C -0.19 -6.34 9.85 30.62 0.30 -6.04 16 30 H 0.08 1.40 5.26 -2.39 -0.01 1.39 16 31 H 0.09 1.86 8.14 -2.39 -0.02 1.84 16 32 H 0.12 1.58 8.14 -2.39 -0.02 1.56 16 33 H 0.06 1.72 7.50 -2.39 -0.02 1.70 16 34 H 0.08 1.82 8.07 -2.39 -0.02 1.80 16 35 H 0.10 1.36 8.08 -2.39 -0.02 1.34 16 36 H 0.07 1.42 8.08 -2.39 -0.02 1.40 16 37 H 0.12 2.38 8.06 -2.91 -0.02 2.36 16 38 H 0.14 1.84 8.06 -2.91 -0.02 1.82 16 39 H 0.14 1.61 8.06 -2.91 -0.02 1.58 16 40 H 0.14 1.74 8.06 -2.91 -0.02 1.72 16 41 H 0.14 2.00 8.06 -2.91 -0.02 1.98 16 42 H 0.15 2.13 8.04 -2.39 -0.02 2.11 16 43 H 0.16 1.90 6.57 -2.39 -0.02 1.89 16 44 H 0.27 15.21 8.31 -92.71 -0.77 14.44 16 45 H 0.09 4.06 4.39 -2.39 -0.01 4.05 16 46 H 0.11 2.99 6.91 -2.38 -0.02 2.98 16 47 H 0.11 2.93 8.14 -2.39 -0.02 2.91 16 48 H 0.10 3.00 8.14 -2.39 -0.02 2.98 16 49 H 0.10 3.33 5.37 -2.38 -0.01 3.32 16 Total: -1.00 -75.45 399.00 6.23 -69.22 By element: Atomic # 1 Polarization: 24.42 SS G_CDS: 0.86 Total: 25.28 kcal Atomic # 6 Polarization: -21.80 SS G_CDS: 5.24 Total: -16.56 kcal Atomic # 7 Polarization: -69.04 SS G_CDS: -1.36 Total: -70.40 kcal Atomic # 8 Polarization: -52.75 SS G_CDS: -0.19 Total: -52.94 kcal Atomic # 14 Polarization: 43.73 SS G_CDS: 1.68 Total: 45.40 kcal Total: -75.45 6.23 -69.22 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001650516579.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.546 kcal (2) G-P(sol) polarization free energy of solvation -75.449 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.995 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.231 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.218 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.764 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds