Wall clock time and date at job start Wed Apr 1 2020 03:00:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09003 * 110.06616 * 2 1 4 4 C 1.53994 * 109.91750 * 238.79827 * 2 1 3 5 5 H 1.08998 * 110.31018 * 358.33528 * 4 2 1 6 6 N 1.46496 * 110.39465 * 120.46720 * 4 2 1 7 7 C 1.34782 * 119.99815 * 202.21853 * 6 4 2 8 8 O 1.21276 * 119.99886 * 359.97438 * 7 6 4 9 9 C 1.50701 * 119.99721 * 179.97438 * 7 6 4 10 10 H 1.08999 * 115.55279 * 325.57992 * 9 7 6 11 11 C 1.52993 * 117.49767 * 111.25600 * 9 7 6 12 12 C 1.53005 * 117.49406 * 179.91473 * 9 7 6 13 13 H 1.08993 * 117.50102 * 359.97438 * 12 9 7 14 14 C 1.53002 * 117.49469 * 145.02336 * 12 9 7 15 15 F 1.39904 * 109.46813 * 179.97438 * 14 12 9 16 16 F 1.39896 * 109.46908 * 299.99190 * 14 12 9 17 17 C 1.54598 * 105.13673 * 239.42604 * 4 2 1 18 18 C 1.54942 * 102.92135 * 338.03834 * 17 4 2 19 19 N 1.47902 * 109.91363 * 121.20629 * 2 1 3 20 20 C 1.46897 * 111.00008 * 265.19423 * 19 2 1 21 21 C 1.50699 * 109.47097 * 176.70983 * 20 19 2 22 22 O 1.21289 * 120.00248 * 353.76391 * 21 20 19 23 23 N 1.34785 * 119.99866 * 173.48279 * 21 20 19 24 24 C 1.37099 * 119.99637 * 180.27192 * 23 21 20 25 25 H 1.07996 * 120.00434 * 0.02562 * 24 23 21 26 26 C 1.38949 * 119.99716 * 179.97438 * 24 23 21 27 27 N 1.31413 * 119.99811 * 180.02562 * 26 24 23 28 28 Si 1.86800 * 120.00024 * 0.02562 * 26 24 23 29 29 H 1.48489 * 109.47460 * 89.99430 * 28 26 24 30 30 H 1.48507 * 109.47023 * 209.99761 * 28 26 24 31 31 H 1.48507 * 109.46946 * 329.98975 * 28 26 24 32 32 H 1.08996 * 109.47156 * 300.25072 * 1 2 3 33 33 H 1.09001 * 109.46692 * 60.24430 * 1 2 3 34 34 H 1.08999 * 109.47132 * 180.24747 * 1 2 3 35 35 H 0.97003 * 120.00000 * 22.21216 * 6 4 2 36 36 H 1.09005 * 117.49976 * 214.97791 * 11 9 7 37 37 H 1.09003 * 117.50102 * 359.97438 * 11 9 7 38 38 H 1.09001 * 109.47275 * 59.99634 * 14 12 9 39 39 H 1.09000 * 110.72338 * 219.68496 * 17 4 2 40 40 H 1.09001 * 110.72828 * 96.39843 * 17 4 2 41 41 H 1.09002 * 110.66618 * 278.97909 * 18 17 4 42 42 H 1.09000 * 110.66519 * 155.85391 * 18 17 4 43 43 H 1.09001 * 109.46837 * 56.70895 * 20 19 2 44 44 H 1.09007 * 109.47312 * 296.70769 * 20 19 2 45 45 H 0.97001 * 119.99981 * 0.28045 * 23 21 20 46 46 H 0.97001 * 119.99397 * 180.02562 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9040 1.0239 0.0000 4 6 2.0546 -0.7501 -1.2384 5 1 1.2228 -1.1401 -1.8250 6 7 2.8831 0.1365 -2.0592 7 6 3.0721 -0.1361 -3.3656 8 8 2.5566 -1.1155 -3.8614 9 6 3.9239 0.7763 -4.2101 10 1 3.8737 1.8350 -3.9559 11 6 5.2647 0.2317 -4.7065 12 6 4.1016 0.4115 -5.6853 13 1 3.6028 -0.4884 -6.0449 14 6 4.1959 1.5610 -6.6907 15 9 4.3557 1.0411 -7.9797 16 9 3.0249 2.3245 -6.6372 17 6 2.9058 -1.9117 -0.6762 18 6 3.2681 -1.4185 0.7472 19 7 2.0338 -0.7205 1.1894 20 6 2.3211 0.2122 2.2873 21 6 2.7539 -0.5632 3.5048 22 8 2.7089 -1.7753 3.4996 23 7 3.1965 0.0899 4.5976 24 6 3.5955 -0.6158 5.7032 25 1 3.5557 -1.6950 5.6984 26 6 4.0522 0.0576 6.8296 27 7 4.4352 -0.6188 7.8892 28 14 4.1218 1.9243 6.8377 29 1 2.8341 2.4655 7.3415 30 1 5.2275 2.3746 7.7209 31 1 4.3595 2.4167 5.4570 32 1 -0.3633 0.5177 0.8877 33 1 -0.3633 0.5101 -0.8922 34 1 -0.3633 -1.0276 0.0044 35 1 3.2956 0.9197 -1.6625 36 1 6.0966 0.9323 -4.7793 37 1 5.5309 -0.7863 -4.4220 38 1 5.0514 2.1900 -6.4444 39 1 3.8052 -2.0558 -1.2750 40 1 2.3213 -2.8306 -0.6290 41 1 4.1097 -0.7268 0.7121 42 1 3.4888 -2.2616 1.4019 43 1 1.4239 0.7852 2.5214 44 1 3.1185 0.8922 1.9872 45 1 3.2325 1.0593 4.6018 46 1 4.7536 -0.1487 8.6756 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001692357169.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:00:20 Heat of formation + Delta-G solvation = -163.052091 kcal Electronic energy + Delta-G solvation = -30073.591609 eV Core-core repulsion = 25440.756309 eV Total energy + Delta-G solvation = -4632.835301 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.165 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -49.88201 -47.93663 -41.54433 -40.58424 -39.45142 -37.61287 -36.04528 -35.35324 -33.74824 -32.32304 -32.29376 -28.68738 -28.05302 -26.63995 -25.65583 -24.69888 -22.77526 -22.28847 -21.52084 -21.24311 -20.80998 -20.17733 -18.94390 -18.14396 -18.03169 -17.81290 -17.47302 -17.14677 -16.69992 -16.54176 -16.31525 -16.00082 -15.62806 -15.28635 -15.14494 -14.87548 -14.84774 -14.46289 -14.34917 -14.31121 -14.13758 -13.95491 -13.81276 -13.62612 -13.14616 -13.01153 -12.97712 -12.75762 -12.44302 -12.40019 -12.38516 -12.17307 -12.00207 -11.95952 -11.78826 -11.71850 -11.58730 -11.47079 -10.99940 -10.38470 -10.22886 -10.15163 -9.34908 -8.39609 -6.00521 1.30479 1.35850 1.37361 1.45838 1.91072 1.98354 2.24573 2.50192 2.63019 2.85092 3.15784 3.18912 3.31177 3.41442 3.43641 3.56835 3.69526 3.77482 3.99084 4.01373 4.16121 4.19564 4.22714 4.23417 4.29672 4.36428 4.43946 4.51363 4.69567 4.72345 4.80434 4.88746 4.89931 4.98951 5.01904 5.03047 5.12368 5.36661 5.43169 5.54624 5.86815 5.94987 6.06889 6.47224 6.61718 6.90710 7.17225 7.41966 8.00128 8.78136 Molecular weight = 345.17amu Principal moments of inertia in cm(-1) A = 0.018399 B = 0.001976 C = 0.001909 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1521.455419 B =14166.236124 C =14661.135686 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.063 3.937 3 H 0.088 0.912 4 C 0.147 3.853 5 H 0.088 0.912 6 N -0.703 5.703 7 C 0.539 3.461 8 O -0.582 6.582 9 C -0.168 4.168 10 H 0.166 0.834 11 C -0.104 4.104 12 C -0.208 4.208 13 H 0.108 0.892 14 C 0.294 3.706 15 F -0.217 7.217 16 F -0.217 7.217 17 C -0.123 4.123 18 C 0.044 3.956 19 N -0.511 5.511 20 C 0.047 3.953 21 C 0.451 3.549 22 O -0.607 6.607 23 N -0.592 5.592 24 C -0.326 4.326 25 H 0.053 0.947 26 C -0.018 4.018 27 N -0.936 5.936 28 Si 0.967 3.033 29 H -0.258 1.258 30 H -0.277 1.277 31 H -0.228 1.228 32 H 0.064 0.936 33 H 0.076 0.924 34 H 0.049 0.951 35 H 0.417 0.583 36 H 0.154 0.846 37 H 0.102 0.898 38 H 0.162 0.838 39 H 0.077 0.923 40 H 0.069 0.931 41 H 0.053 0.947 42 H 0.057 0.943 43 H 0.121 0.879 44 H 0.086 0.914 45 H 0.390 0.610 46 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.428 14.767 -28.153 31.823 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.045 4.045 3 H 0.106 0.894 4 C 0.041 3.959 5 H 0.106 0.894 6 N -0.354 5.354 7 C 0.327 3.673 8 O -0.462 6.462 9 C -0.189 4.189 10 H 0.183 0.817 11 C -0.142 4.142 12 C -0.227 4.227 13 H 0.126 0.874 14 C 0.241 3.759 15 F -0.198 7.198 16 F -0.199 7.199 17 C -0.162 4.162 18 C -0.084 4.084 19 N -0.237 5.237 20 C -0.084 4.084 21 C 0.238 3.762 22 O -0.491 6.491 23 N -0.234 5.234 24 C -0.455 4.455 25 H 0.071 0.929 26 C -0.217 4.217 27 N -0.577 5.577 28 Si 0.786 3.214 29 H -0.183 1.183 30 H -0.202 1.202 31 H -0.151 1.151 32 H 0.083 0.917 33 H 0.095 0.905 34 H 0.068 0.932 35 H 0.254 0.746 36 H 0.172 0.828 37 H 0.120 0.880 38 H 0.179 0.821 39 H 0.095 0.905 40 H 0.087 0.913 41 H 0.071 0.929 42 H 0.076 0.924 43 H 0.139 0.861 44 H 0.104 0.896 45 H 0.225 0.775 46 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 0.678 12.893 -28.118 30.940 hybrid contribution 0.573 0.859 0.720 1.259 sum 1.250 13.753 -27.398 30.681 Atomic orbital electron populations 1.21732 0.92497 1.02303 1.02527 1.22678 0.97424 0.96971 0.87410 0.89420 1.21678 0.93230 0.89914 0.91072 0.89362 1.45917 1.51374 1.29350 1.08796 1.20076 0.80101 0.84898 0.82240 1.90723 1.51190 1.30855 1.73419 1.22301 1.01141 1.01906 0.93576 0.81671 1.23334 0.90319 1.04500 0.95999 1.23282 1.07622 1.01051 0.90783 0.87403 1.21785 0.86888 0.89029 0.78202 1.92972 1.95858 1.88471 1.42486 1.92981 1.53511 1.77056 1.96337 1.22801 1.00226 0.98471 0.94693 1.23134 0.91117 0.98633 0.95476 1.64399 1.27888 1.25812 1.05583 1.22043 1.03124 0.93710 0.89510 1.20885 0.81471 0.88460 0.85343 1.90551 1.58546 1.16434 1.83557 1.42022 1.59859 1.08378 1.13151 1.18969 1.41733 0.92597 0.92203 0.92902 1.26153 0.95875 1.05681 0.93949 1.69817 1.43849 1.38950 1.05103 0.85343 0.79245 0.76168 0.80603 1.18269 1.20221 1.15070 0.91745 0.90547 0.93161 0.74572 0.82807 0.87955 0.82068 0.90485 0.91270 0.92915 0.92442 0.86090 0.89631 0.77485 0.91228 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.42 9.32 71.98 0.67 -1.74 16 2 C 0.06 1.20 2.87 45.06 0.13 1.33 16 3 H 0.09 1.15 7.23 -2.39 -0.02 1.14 16 4 C 0.15 2.90 2.93 45.87 0.13 3.04 16 5 H 0.09 2.04 7.19 -2.39 -0.02 2.02 16 6 N -0.70 -9.97 5.09 -438.37 -2.23 -12.20 16 7 C 0.54 9.46 7.61 87.66 0.67 10.12 16 8 O -0.58 -15.97 15.95 -3.02 -0.05 -16.02 16 9 C -0.17 -1.55 5.86 -11.54 -0.07 -1.62 16 10 H 0.17 0.43 8.14 -2.39 -0.02 0.41 16 11 C -0.10 -0.61 9.88 30.62 0.30 -0.31 16 12 C -0.21 -2.37 5.41 -10.77 -0.06 -2.43 16 13 H 0.11 1.96 7.67 -2.39 -0.02 1.94 16 14 C 0.29 2.74 5.50 71.98 0.40 3.14 16 15 F -0.22 -3.28 17.34 44.97 0.78 -2.50 16 16 F -0.22 -3.20 17.29 44.97 0.78 -2.43 16 17 C -0.12 -3.00 6.78 31.80 0.22 -2.78 16 18 C 0.04 1.28 5.78 86.65 0.50 1.78 16 19 N -0.51 -14.34 4.62 -862.59 -3.99 -18.32 16 20 C 0.05 1.33 5.18 85.56 0.44 1.78 16 21 C 0.45 19.63 7.47 87.66 0.65 20.28 16 22 O -0.61 -33.11 14.39 -3.06 -0.04 -33.16 16 23 N -0.59 -26.94 5.09 -306.98 -1.56 -28.50 16 24 C -0.33 -18.77 10.16 84.04 0.85 -17.92 16 25 H 0.05 3.67 7.39 -2.91 -0.02 3.64 16 26 C -0.02 -1.00 5.50 84.93 0.47 -0.53 16 27 N -0.94 -56.03 13.96 21.66 0.30 -55.72 16 28 Si 0.97 37.55 27.74 68.60 1.90 39.46 16 29 H -0.26 -9.54 7.11 99.48 0.71 -8.84 16 30 H -0.28 -10.76 7.11 99.48 0.71 -10.05 16 31 H -0.23 -7.20 6.52 99.48 0.65 -6.55 16 32 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 33 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 34 H 0.05 1.09 8.14 -2.39 -0.02 1.07 16 35 H 0.42 3.22 8.29 -92.71 -0.77 2.46 16 36 H 0.15 -0.27 8.05 -2.38 -0.02 -0.29 16 37 H 0.10 0.89 8.14 -2.39 -0.02 0.87 16 38 H 0.16 -0.04 7.90 -2.39 -0.02 -0.06 16 39 H 0.08 1.78 8.05 -2.39 -0.02 1.76 16 40 H 0.07 1.89 8.14 -2.39 -0.02 1.87 16 41 H 0.05 1.35 7.91 -2.39 -0.02 1.33 16 42 H 0.06 2.21 6.85 -2.39 -0.02 2.19 16 43 H 0.12 2.78 8.14 -2.39 -0.02 2.76 16 44 H 0.09 1.82 7.99 -2.38 -0.02 1.80 16 45 H 0.39 14.39 5.76 -92.71 -0.53 13.86 16 46 H 0.28 15.21 8.31 -92.71 -0.77 14.44 16 Total: -1.00 -86.16 388.02 0.87 -85.29 By element: Atomic # 1 Polarization: 30.30 SS G_CDS: -0.33 Total: 29.97 kcal Atomic # 6 Polarization: 8.81 SS G_CDS: 5.31 Total: 14.12 kcal Atomic # 7 Polarization: -107.27 SS G_CDS: -7.48 Total: -114.75 kcal Atomic # 8 Polarization: -49.08 SS G_CDS: -0.09 Total: -49.17 kcal Atomic # 9 Polarization: -6.48 SS G_CDS: 1.56 Total: -4.92 kcal Atomic # 14 Polarization: 37.55 SS G_CDS: 1.90 Total: 39.46 kcal Total: -86.16 0.87 -85.29 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001692357169.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.761 kcal (2) G-P(sol) polarization free energy of solvation -86.161 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -163.922 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.870 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.291 kcal (6) G-S(sol) free energy of system = (1) + (5) -163.052 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds