Wall clock time and date at job start Wed Apr 1 2020 03:13:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09002 * 110.28775 * 2 1 4 4 C 1.54006 * 110.32955 * 237.86847 * 2 1 3 5 5 N 1.47483 * 107.08217 * 239.70075 * 4 2 1 6 6 C 1.34773 * 127.03225 * 205.41218 * 5 4 2 7 7 O 1.21288 * 120.00263 * 184.60381 * 6 5 4 8 8 C 1.50704 * 120.00212 * 4.60321 * 6 5 4 9 9 C 1.52993 * 115.54992 * 290.54378 * 8 6 5 10 10 F 1.39900 * 109.47384 * 306.06755 * 9 8 6 11 11 F 1.39906 * 109.47391 * 66.06364 * 9 8 6 12 12 C 1.53001 * 117.49709 * 144.87010 * 8 6 5 13 13 C 1.52998 * 117.49663 * 76.20960 * 8 6 5 14 14 C 1.48117 * 105.93670 * 25.44241 * 5 4 2 15 15 C 1.54616 * 110.32696 * 122.13426 * 2 1 3 16 16 H 1.09001 * 110.74229 * 215.48034 * 15 2 1 17 17 N 1.46894 * 110.73975 * 338.81207 * 15 2 1 18 18 C 1.46908 * 111.00023 * 199.38257 * 17 15 2 19 19 C 1.50703 * 109.47012 * 179.97438 * 18 17 15 20 20 O 1.21296 * 120.00072 * 0.02562 * 19 18 17 21 21 N 1.34774 * 119.99766 * 179.97438 * 19 18 17 22 22 C 1.37096 * 119.99869 * 180.02562 * 21 19 18 23 23 H 1.08005 * 120.00136 * 0.02562 * 22 21 19 24 24 C 1.38955 * 119.99914 * 179.97438 * 22 21 19 25 25 N 1.31410 * 119.99794 * 0.02562 * 24 22 21 26 26 Si 1.86796 * 119.99785 * 179.97438 * 24 22 21 27 27 H 1.48508 * 109.46971 * 90.00471 * 26 24 22 28 28 H 1.48499 * 109.47360 * 210.00246 * 26 24 22 29 29 H 1.48501 * 109.47573 * 330.00578 * 26 24 22 30 30 H 1.09008 * 109.47291 * 188.28070 * 1 2 3 31 31 H 1.09002 * 109.47610 * 308.28512 * 1 2 3 32 32 H 1.09006 * 109.47278 * 68.28633 * 1 2 3 33 33 H 1.09000 * 109.91348 * 359.05887 * 4 2 1 34 34 H 1.08994 * 109.91264 * 120.33836 * 4 2 1 35 35 H 1.08998 * 109.47395 * 186.06740 * 9 8 6 36 36 H 1.08999 * 117.50131 * 0.02562 * 12 8 6 37 37 H 1.09003 * 117.49045 * 145.02057 * 12 8 6 38 38 H 1.08997 * 117.50171 * 214.97773 * 13 8 6 39 39 H 1.08996 * 117.50004 * 359.97438 * 13 8 6 40 40 H 1.09002 * 110.66267 * 79.14874 * 14 5 4 41 41 H 1.09000 * 110.66575 * 202.10284 * 14 5 4 42 42 H 1.00903 * 111.00057 * 323.33313 * 17 15 2 43 43 H 1.08990 * 109.47021 * 299.99894 * 18 17 15 44 44 H 1.08999 * 109.46971 * 60.00124 * 18 17 15 45 45 H 0.97004 * 120.00014 * 0.02562 * 21 19 18 46 46 H 0.97005 * 119.99770 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9079 1.0224 0.0000 4 6 2.0650 -0.7681 -1.2229 5 7 2.8824 -1.8835 -0.7103 6 6 3.8938 -2.5076 -1.3459 7 8 4.4284 -3.4697 -0.8364 8 6 4.3605 -2.0102 -2.6897 9 6 3.3830 -2.2218 -3.8475 10 9 3.0223 -3.5719 -3.9125 11 9 2.2393 -1.4430 -3.6406 12 6 5.8554 -2.1103 -2.9999 13 6 5.2222 -0.7462 -2.7148 14 6 2.3641 -2.1779 0.6456 15 6 2.0670 -0.7712 1.2278 16 1 2.9795 -0.3093 1.6048 17 7 1.0466 -0.8469 2.2817 18 6 1.6560 -1.1490 3.5838 19 6 0.5810 -1.2179 4.6377 20 8 -0.5788 -1.0340 4.3339 21 7 0.9082 -1.4850 5.9176 22 6 -0.0699 -1.5482 6.8762 23 1 -1.1026 -1.3844 6.6057 24 6 0.2674 -1.8241 8.1957 25 7 1.5239 -2.0239 8.5246 26 14 -1.0651 -1.9095 9.5020 27 1 -1.5724 -3.3017 9.6013 28 1 -0.5020 -1.4933 10.8115 29 1 -2.1804 -1.0016 9.1317 30 1 -0.3634 -1.0170 0.1480 31 1 -0.3634 0.6367 0.8066 32 1 -0.3634 0.3802 -0.9548 33 1 1.2331 -1.1568 -1.8103 34 1 2.6793 -0.1086 -1.8358 35 1 3.8586 -1.9274 -4.7830 36 1 6.5013 -2.5364 -2.2322 37 1 6.1423 -2.3267 -4.0290 38 1 5.0930 -0.0656 -3.5563 39 1 5.4512 -0.2741 -1.7594 40 1 1.4504 -2.7696 0.5880 41 1 3.1173 -2.6929 1.2419 42 1 0.5066 0.0045 2.3240 43 1 2.1737 -2.1066 3.5292 44 1 2.3680 -0.3652 3.8423 45 1 1.8357 -1.6325 6.1604 46 1 1.7594 -2.2161 9.4458 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001700255463.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:13:06 Heat of formation + Delta-G solvation = -131.002265 kcal Electronic energy + Delta-G solvation = -30985.785440 eV Core-core repulsion = 26354.339925 eV Total energy + Delta-G solvation = -4631.445516 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.165 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -49.40119 -47.40543 -40.58444 -38.92982 -38.00034 -36.90862 -34.77202 -33.80498 -32.29579 -31.19718 -29.17033 -27.82877 -26.70151 -26.23882 -24.51783 -23.53936 -23.12564 -22.28720 -19.64227 -19.46543 -19.07893 -18.28226 -17.86850 -17.69578 -17.55188 -16.57889 -16.19893 -15.90312 -15.71722 -15.31089 -14.89708 -14.77338 -14.39507 -14.35478 -14.20696 -13.82161 -13.74027 -13.61708 -13.42449 -13.07860 -12.91861 -12.56568 -12.42791 -12.25885 -12.21620 -12.06553 -11.96226 -11.68906 -11.52586 -11.22347 -11.19039 -11.06819 -10.94374 -10.80489 -10.69379 -10.39150 -10.21503 -10.08091 -9.50633 -8.90166 -8.47267 -8.12574 -7.96075 -6.41362 -3.82226 2.16964 2.52030 2.88651 3.16813 3.18421 3.27044 3.32643 3.60260 3.89830 3.91395 4.00084 4.03127 4.10928 4.28154 4.41159 4.50819 4.52683 4.67228 4.76135 4.95921 4.96603 5.09423 5.18647 5.23292 5.24791 5.32866 5.36178 5.45103 5.46814 5.67269 5.72155 5.76564 5.86152 5.86369 5.96562 6.05891 6.10574 6.26860 6.39774 7.16506 7.29386 7.55534 7.59934 7.86695 8.06335 8.61171 9.18003 9.54452 10.05530 10.76368 Molecular weight = 345.17amu Principal moments of inertia in cm(-1) A = 0.022578 B = 0.002127 C = 0.002042 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1239.872380 B =13160.003641 C =13707.424465 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.108 4.108 3 H 0.081 0.919 4 C 0.108 3.892 5 N -0.611 5.611 6 C 0.571 3.429 7 O -0.526 6.526 8 C -0.230 4.230 9 C 0.309 3.691 10 F -0.194 7.194 11 F -0.195 7.195 12 C -0.123 4.123 13 C -0.138 4.138 14 C 0.115 3.885 15 C 0.076 3.924 16 H 0.055 0.945 17 N -0.654 5.654 18 C 0.048 3.952 19 C 0.441 3.559 20 O -0.583 6.583 21 N -0.563 5.563 22 C -0.299 4.299 23 H 0.103 0.897 24 C 0.022 3.978 25 N -0.902 5.902 26 Si 0.930 3.070 27 H -0.278 1.278 28 H -0.284 1.284 29 H -0.270 1.270 30 H 0.072 0.928 31 H 0.063 0.937 32 H 0.053 0.947 33 H 0.081 0.919 34 H 0.075 0.925 35 H 0.120 0.880 36 H 0.116 0.884 37 H 0.112 0.888 38 H 0.113 0.887 39 H 0.111 0.889 40 H 0.087 0.913 41 H 0.082 0.918 42 H 0.356 0.644 43 H 0.086 0.914 44 H 0.044 0.956 45 H 0.392 0.608 46 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.595 5.760 -26.726 28.974 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.127 4.127 3 H 0.100 0.900 4 C -0.015 4.015 5 N -0.345 5.345 6 C 0.357 3.643 7 O -0.402 6.402 8 C -0.234 4.234 9 C 0.255 3.745 10 F -0.175 7.175 11 F -0.176 7.176 12 C -0.160 4.160 13 C -0.176 4.176 14 C -0.007 4.007 15 C -0.035 4.035 16 H 0.073 0.927 17 N -0.289 5.289 18 C -0.085 4.085 19 C 0.227 3.773 20 O -0.467 6.467 21 N -0.200 5.200 22 C -0.429 4.429 23 H 0.121 0.879 24 C -0.180 4.180 25 N -0.543 5.543 26 Si 0.757 3.243 27 H -0.204 1.204 28 H -0.210 1.210 29 H -0.194 1.194 30 H 0.091 0.909 31 H 0.082 0.918 32 H 0.072 0.928 33 H 0.099 0.901 34 H 0.093 0.907 35 H 0.138 0.862 36 H 0.134 0.866 37 H 0.131 0.869 38 H 0.131 0.869 39 H 0.129 0.871 40 H 0.105 0.895 41 H 0.100 0.900 42 H 0.178 0.822 43 H 0.104 0.896 44 H 0.062 0.938 45 H 0.225 0.775 46 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 9.039 4.614 -26.617 28.486 hybrid contribution 0.242 0.609 1.150 1.324 sum 9.282 5.223 -25.467 27.604 Atomic orbital electron populations 1.21715 0.92780 1.03818 1.01270 1.22246 0.97852 0.98941 0.93700 0.90039 1.22497 0.94978 0.87868 0.96163 1.48589 1.32624 1.35194 1.18067 1.18557 0.78872 0.82428 0.84431 1.90744 1.56439 1.26001 1.66995 1.22480 0.96054 1.09330 0.95518 1.21109 0.81850 0.73757 0.97781 1.93045 1.92737 1.34344 1.97408 1.93012 1.53751 1.74587 1.96220 1.23104 0.89929 0.98619 1.04373 1.23144 0.99221 0.90108 1.05095 1.22579 0.99827 0.97064 0.81240 1.22589 0.94179 0.94897 0.91847 0.92665 1.60123 1.22701 1.43064 1.02990 1.21763 0.95993 1.01442 0.89308 1.19758 0.89581 0.84611 0.83373 1.90523 1.20042 1.55206 1.80972 1.41865 1.10397 1.61749 1.05962 1.19700 0.90894 1.45258 0.87019 0.87901 1.25271 0.97147 0.97221 0.98337 1.69615 1.16487 1.48367 1.19816 0.85854 0.80310 0.78702 0.79395 1.20370 1.20952 1.19424 0.90932 0.91776 0.92827 0.90092 0.90656 0.86242 0.86582 0.86943 0.86874 0.87087 0.89460 0.89976 0.82163 0.89574 0.93768 0.77455 0.91860 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.42 7.98 37.15 0.30 -1.12 16 2 C -0.11 -1.04 3.50 -89.25 -0.31 -1.35 16 3 H 0.08 0.67 8.14 -51.93 -0.42 0.24 16 4 C 0.11 1.02 4.73 -2.98 -0.01 1.00 16 5 N -0.61 -7.29 3.29 -169.65 -0.56 -7.85 16 6 C 0.57 7.29 6.91 -10.98 -0.08 7.21 16 7 O -0.53 -8.79 17.04 5.55 0.09 -8.70 16 8 C -0.23 -1.90 1.33 -155.66 -0.21 -2.11 16 9 C 0.31 2.28 5.10 37.15 0.19 2.47 16 10 F -0.19 -2.11 17.13 2.25 0.04 -2.07 16 11 F -0.19 -1.62 13.23 2.25 0.03 -1.59 16 12 C -0.12 -0.73 9.75 -26.69 -0.26 -0.99 16 13 C -0.14 -0.69 9.48 -26.69 -0.25 -0.94 16 14 C 0.12 1.54 6.69 -2.03 -0.01 1.52 16 15 C 0.08 0.93 3.22 -65.75 -0.21 0.71 16 16 H 0.06 0.66 7.91 -51.93 -0.41 0.25 16 17 N -0.65 -9.98 5.14 -105.91 -0.54 -10.52 16 18 C 0.05 0.83 6.03 -4.97 -0.03 0.80 16 19 C 0.44 10.32 7.82 -10.98 -0.09 10.23 16 20 O -0.58 -15.59 15.78 5.54 0.09 -15.50 16 21 N -0.56 -14.30 5.29 -10.96 -0.06 -14.36 16 22 C -0.30 -8.36 9.68 -14.93 -0.14 -8.51 16 23 H 0.10 3.01 7.16 -52.48 -0.38 2.64 16 24 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16 25 N -0.90 -24.71 13.05 55.50 0.72 -23.98 16 26 Si 0.93 21.16 29.55 -169.99 -5.02 16.14 16 27 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 28 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 29 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 30 H 0.07 0.89 7.99 -51.92 -0.42 0.47 16 31 H 0.06 0.70 6.86 -51.93 -0.36 0.34 16 32 H 0.05 0.46 8.14 -51.93 -0.42 0.03 16 33 H 0.08 0.80 6.40 -51.93 -0.33 0.47 16 34 H 0.08 0.57 6.62 -51.93 -0.34 0.23 16 35 H 0.12 0.38 8.09 -51.93 -0.42 -0.04 16 36 H 0.12 0.85 8.07 -51.93 -0.42 0.43 16 37 H 0.11 0.37 8.14 -51.93 -0.42 -0.05 16 38 H 0.11 0.27 8.14 -51.93 -0.42 -0.15 16 39 H 0.11 0.61 8.14 -51.93 -0.42 0.18 16 40 H 0.09 1.26 8.14 -51.93 -0.42 0.84 16 41 H 0.08 1.19 7.89 -51.93 -0.41 0.78 16 42 H 0.36 5.51 6.45 -39.29 -0.25 5.26 16 43 H 0.09 1.43 8.12 -51.93 -0.42 1.01 16 44 H 0.04 0.69 8.09 -51.93 -0.42 0.27 16 45 H 0.39 9.56 7.90 -40.82 -0.32 9.24 16 46 H 0.27 7.04 8.31 -40.82 -0.34 6.70 16 LS Contribution 383.25 15.07 5.78 5.78 Total: -1.00 -34.35 383.25 -7.22 -41.57 By element: Atomic # 1 Polarization: 18.22 SS G_CDS: -6.57 Total: 11.65 kcal Atomic # 6 Polarization: 10.65 SS G_CDS: -1.22 Total: 9.43 kcal Atomic # 7 Polarization: -56.28 SS G_CDS: -0.44 Total: -56.71 kcal Atomic # 8 Polarization: -24.38 SS G_CDS: 0.18 Total: -24.20 kcal Atomic # 9 Polarization: -3.72 SS G_CDS: 0.07 Total: -3.65 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.02 Total: 16.14 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -34.35 -7.22 -41.57 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700255463.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -89.430 kcal (2) G-P(sol) polarization free energy of solvation -34.348 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.778 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.224 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.572 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.002 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds