Wall clock time and date at job start Wed Apr 1 2020 03:18:02
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53006 * 1
3 3 H 1.09007 * 109.46514 * 2 1
4 4 N 1.46492 * 109.47275 * 119.99749 * 2 1 3
5 5 C 1.34772 * 120.00512 * 274.99985 * 4 2 1
6 6 O 1.21283 * 119.99504 * 5.35870 * 5 4 2
7 7 C 1.50704 * 120.00345 * 185.35561 * 5 4 2
8 8 C 1.52997 * 115.55935 * 269.84565 * 7 5 4
9 9 F 1.39898 * 109.47709 * 328.30187 * 8 7 5
10 10 F 1.39902 * 109.46919 * 88.30390 * 8 7 5
11 11 C 1.52994 * 117.49629 * 55.53591 * 7 5 4
12 12 C 1.53003 * 60.03191 * 107.47821 * 11 7 5
13 13 C 1.52999 * 109.47206 * 240.00451 * 2 1 3
14 14 C 1.53931 * 113.73471 * 158.76589 * 13 2 1
15 15 N 1.48194 * 86.09897 * 221.95192 * 14 13 2
16 16 C 1.46904 * 111.06724 * 137.51916 * 15 14 13
17 17 C 1.50702 * 109.46983 * 90.57070 * 16 15 14
18 18 O 1.21289 * 120.00018 * 359.97438 * 17 16 15
19 19 N 1.34777 * 119.99529 * 179.97438 * 17 16 15
20 20 C 1.37104 * 119.99639 * 179.97438 * 19 17 16
21 21 H 1.08006 * 119.99881 * 0.02562 * 20 19 17
22 22 C 1.38947 * 120.00130 * 180.02562 * 20 19 17
23 23 N 1.31415 * 119.99863 * 359.97438 * 22 20 19
24 24 Si 1.86796 * 120.00155 * 180.02562 * 22 20 19
25 25 H 1.48499 * 109.47508 * 59.99551 * 24 22 20
26 26 H 1.48500 * 109.47362 * 179.97438 * 24 22 20
27 27 H 1.48501 * 109.46929 * 299.99715 * 24 22 20
28 28 C 1.47956 * 90.79890 * 24.60104 * 15 14 13
29 29 H 1.08998 * 109.47113 * 59.99817 * 1 2 3
30 30 H 1.08998 * 109.46626 * 180.02562 * 1 2 3
31 31 H 1.08994 * 109.46994 * 300.00008 * 1 2 3
32 32 H 0.97002 * 119.99743 * 95.00631 * 4 2 1
33 33 H 1.09000 * 109.47293 * 208.29783 * 8 7 5
34 34 H 1.08998 * 117.49917 * 214.97906 * 11 7 5
35 35 H 1.09001 * 117.49907 * 359.97438 * 11 7 5
36 36 H 1.09000 * 117.49950 * 107.50291 * 12 11 7
37 37 H 1.08999 * 117.49939 * 252.52056 * 12 11 7
38 38 H 1.09008 * 112.93211 * 290.33054 * 13 2 1
39 39 H 1.09000 * 113.75789 * 336.23145 * 14 13 2
40 40 H 1.08996 * 113.76332 * 107.60523 * 14 13 2
41 41 H 1.09000 * 109.46677 * 210.56687 * 16 15 14
42 42 H 1.08997 * 109.47211 * 330.56579 * 16 15 14
43 43 H 0.96993 * 120.00767 * 359.97438 * 19 17 16
44 44 H 0.96995 * 119.99676 * 179.97438 * 23 22 20
45 45 H 1.09000 * 113.75989 * 221.08482 * 28 15 14
46 46 H 1.08997 * 113.86269 * 89.73072 * 28 15 14
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5301 0.0000 0.0000
3 1 1.8933 1.0278 0.0000
4 7 2.0184 -0.6905 1.1961
5 6 2.1472 -0.0182 2.3571
6 8 1.7681 1.1310 2.4375
7 6 2.7621 -0.6945 3.5553
8 6 1.7828 -1.4267 4.4749
9 9 0.5480 -0.7693 4.4594
10 9 1.6166 -2.7416 4.0268
11 6 4.1584 -1.2968 3.3872
12 6 3.9713 -0.0176 4.2055
13 6 2.0401 -0.7211 -1.2493
14 6 3.4849 -0.3523 -1.6311
15 7 2.9994 -0.3202 -3.0309
16 6 3.5499 0.8337 -3.7545
17 6 4.8445 0.4396 -4.4177
18 8 5.2672 -0.6910 -4.2989
19 7 5.5325 1.3436 -5.1429
20 6 6.7106 0.9853 -5.7458
21 1 7.0870 -0.0215 -5.6400
22 6 7.4203 1.9173 -6.4930
23 7 6.9620 3.1422 -6.6222
24 14 9.0249 1.4290 -7.3151
25 1 8.7744 0.3195 -8.2698
26 1 9.5812 2.5952 -8.0471
27 1 9.9947 0.9837 -6.2823
28 6 1.6208 -0.0474 -2.5683
29 1 -0.3633 0.5138 -0.8899
30 1 -0.3632 -1.0277 0.0005
31 1 -0.3633 0.5138 0.8899
32 1 2.2492 -1.6317 1.1525
33 1 2.1766 -1.4363 5.4912
34 1 4.3794 -2.2148 3.9318
35 1 4.6321 -1.2044 2.4099
36 1 4.0693 -0.0940 5.2884
37 1 4.3216 0.9165 3.7664
38 1 1.8528 -1.7948 -1.2262
39 1 3.8042 0.6196 -1.2547
40 1 4.2072 -1.1444 -1.4338
41 1 2.8381 1.1604 -4.5125
42 1 3.7338 1.6480 -3.0537
43 1 5.1944 2.2477 -5.2382
44 1 7.4576 3.7929 -7.1434
45 1 0.8563 -0.5963 -3.1182
46 1 1.3918 1.0134 -2.4661
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001717549085.mol2 46
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 03:18:02
Heat of formation + Delta-G solvation = -111.620721 kcal
Electronic energy + Delta-G solvation = -30399.660014 eV
Core-core repulsion = 25769.054945 eV
Total energy + Delta-G solvation = -4630.605069 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 345.165 amu
Computer time = 0.85 seconds
Orbital eigenvalues (eV)
-49.38372 -47.39382 -40.71523 -39.80732 -37.83693 -37.19889 -35.43897 -33.86626
-31.62511 -31.15486 -29.43368 -27.82122 -26.34062 -25.56410 -24.65892 -23.68286
-23.08980 -21.54011 -20.57441 -19.53944 -19.17312 -18.25261 -17.83882 -17.66604
-17.47755 -16.68694 -16.48883 -16.08373 -15.32017 -15.26648 -14.97366 -14.79335
-14.60345 -14.28413 -14.16838 -14.00901 -13.74714 -13.72050 -13.36955 -13.18135
-13.03603 -12.68303 -12.57099 -12.34425 -12.20019 -12.13522 -11.88107 -11.61710
-11.39438 -11.21793 -11.14797 -11.05374 -10.93354 -10.68593 -10.67543 -10.43330
-10.19725 -10.07071 -9.47547 -9.37427 -8.70606 -8.15650 -7.94244 -6.39828
-3.80665 2.16031 2.57368 2.89317 3.17491 3.20762 3.26170 3.30543
3.64142 3.88482 3.94679 4.01348 4.02024 4.12167 4.23019 4.37130
4.51008 4.53294 4.67613 4.94499 4.98202 5.01191 5.03711 5.16940
5.20603 5.23391 5.28031 5.37879 5.43500 5.47098 5.51698 5.65259
5.68836 5.75469 5.75763 5.91508 6.03139 6.10980 6.29116 6.30067
6.58404 7.16573 7.19331 7.56397 7.88510 8.07778 8.64314 9.20203
9.56869 10.09416 10.78073
Molecular weight = 345.17amu
Principal moments of inertia in cm(-1)
A = 0.017498 B = 0.002077 C = 0.001972
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1599.763300 B =13476.170249 C =14198.961779
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.162 4.162
2 C 0.151 3.849
3 H 0.088 0.912
4 N -0.713 5.713
5 C 0.556 3.444
6 O -0.522 6.522
7 C -0.235 4.235
8 C 0.312 3.688
9 F -0.194 7.194
10 F -0.199 7.199
11 C -0.142 4.142
12 C -0.125 4.125
13 C -0.126 4.126
14 C 0.018 3.982
15 N -0.448 5.448
16 C 0.010 3.990
17 C 0.447 3.553
18 O -0.576 6.576
19 N -0.567 5.567
20 C -0.298 4.298
21 H 0.102 0.898
22 C 0.021 3.979
23 N -0.903 5.903
24 Si 0.930 3.070
25 H -0.274 1.274
26 H -0.284 1.284
27 H -0.274 1.274
28 C 0.010 3.990
29 H 0.069 0.931
30 H 0.058 0.942
31 H 0.061 0.939
32 H 0.403 0.597
33 H 0.121 0.879
34 H 0.114 0.886
35 H 0.115 0.885
36 H 0.113 0.887
37 H 0.113 0.887
38 H 0.105 0.895
39 H 0.067 0.933
40 H 0.091 0.909
41 H 0.088 0.912
42 H 0.057 0.943
43 H 0.391 0.609
44 H 0.272 0.728
45 H 0.091 0.909
46 H 0.070 0.930
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -11.544 -6.593 22.752 26.351
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.220 4.220
2 C 0.047 3.953
3 H 0.106 0.894
4 N -0.364 5.364
5 C 0.340 3.660
6 O -0.397 6.397
7 C -0.239 4.239
8 C 0.257 3.743
9 F -0.175 7.175
10 F -0.180 7.180
11 C -0.179 4.179
12 C -0.162 4.162
13 C -0.145 4.145
14 C -0.111 4.111
15 N -0.170 5.170
16 C -0.122 4.122
17 C 0.232 3.768
18 O -0.460 6.460
19 N -0.205 5.205
20 C -0.428 4.428
21 H 0.120 0.880
22 C -0.180 4.180
23 N -0.545 5.545
24 Si 0.758 3.242
25 H -0.199 1.199
26 H -0.210 1.210
27 H -0.199 1.199
28 C -0.119 4.119
29 H 0.088 0.912
30 H 0.077 0.923
31 H 0.080 0.920
32 H 0.238 0.762
33 H 0.138 0.862
34 H 0.132 0.868
35 H 0.133 0.867
36 H 0.131 0.869
37 H 0.131 0.869
38 H 0.123 0.877
39 H 0.085 0.915
40 H 0.109 0.891
41 H 0.106 0.894
42 H 0.075 0.925
43 H 0.224 0.776
44 H 0.081 0.919
45 H 0.110 0.890
46 H 0.088 0.912
Dipole moment (debyes) X Y Z Total
from point charges -11.332 -6.894 22.276 25.926
hybrid contribution 0.428 0.720 -0.198 0.861
sum -10.903 -6.174 22.078 25.386
Atomic orbital electron populations
1.22139 0.94776 1.02394 1.02725 1.21108 0.94464 0.96974 0.82768
0.89381 1.46006 1.66945 1.14178 1.09313 1.18972 0.78241 0.86063
0.82710 1.90729 1.48073 1.17465 1.83397 1.22598 0.92332 1.08435
1.00564 1.21070 0.80576 0.74560 0.98056 1.93043 1.45834 1.80939
1.97663 1.93023 1.95919 1.37503 1.91528 1.23188 0.92566 0.98338
1.03793 1.23136 0.94563 0.98139 1.00378 1.23331 0.96993 1.01245
0.92924 1.24015 0.95959 1.01642 0.89496 1.68416 1.01639 1.35812
1.11164 1.22483 0.97839 0.92763 0.99162 1.19687 0.86377 0.86514
0.84243 1.90513 1.70317 1.20424 1.64697 1.41877 1.21279 1.12352
1.44960 1.19640 0.97676 0.98680 1.26796 0.88049 1.25252 0.99883
0.95001 0.97862 1.69605 1.40070 1.03438 1.41385 0.85923 0.81292
0.77784 0.79247 1.19900 1.20988 1.19949 1.23949 0.94298 0.99740
0.93925 0.91231 0.92269 0.92020 0.76208 0.86181 0.86816 0.86699
0.86905 0.86861 0.87703 0.91489 0.89103 0.89399 0.92493 0.77559
0.91860 0.89021 0.91164
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.16 -1.52 9.31 37.16 0.35 -1.17 16
2 C 0.15 1.51 2.34 -67.93 -0.16 1.36 16
3 H 0.09 1.04 7.50 -51.92 -0.39 0.65 16
4 N -0.71 -6.67 5.07 -53.80 -0.27 -6.95 16
5 C 0.56 6.07 6.26 -10.99 -0.07 6.01 16
6 O -0.52 -7.69 16.75 5.56 0.09 -7.60 16
7 C -0.24 -1.79 2.14 -155.63 -0.33 -2.12 16
8 C 0.31 2.21 5.37 37.16 0.20 2.41 16
9 F -0.19 -2.03 16.66 2.25 0.04 -1.99 16
10 F -0.20 -1.59 17.26 2.25 0.04 -1.55 16
11 C -0.14 -0.74 9.87 -26.73 -0.26 -1.01 16
12 C -0.12 -0.71 9.88 -26.69 -0.26 -0.97 16
13 C -0.13 -1.31 3.46 -89.69 -0.31 -1.62 16
14 C 0.02 0.25 7.53 -2.63 -0.02 0.23 16
15 N -0.45 -7.27 5.65 -239.53 -1.35 -8.63 16
16 C 0.01 0.17 5.28 -4.97 -0.03 0.15 16
17 C 0.45 10.75 7.83 -10.98 -0.09 10.67 16
18 O -0.58 -15.98 16.01 5.55 0.09 -15.89 16
19 N -0.57 -14.61 5.29 -10.96 -0.06 -14.67 16
20 C -0.30 -8.42 9.68 -14.93 -0.14 -8.56 16
21 H 0.10 3.00 7.16 -52.48 -0.38 2.62 16
22 C 0.02 0.58 5.50 -17.47 -0.10 0.48 16
23 N -0.90 -24.82 13.05 55.50 0.72 -24.09 16
24 Si 0.93 21.22 29.55 -169.99 -5.02 16.20 16
25 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16
26 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16
27 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16
28 C 0.01 0.12 6.65 -2.76 -0.02 0.10 16
29 H 0.07 0.58 7.51 -51.93 -0.39 0.19 16
30 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16
31 H 0.06 0.68 8.08 -51.93 -0.42 0.26 16
32 H 0.40 3.04 8.61 -40.82 -0.35 2.69 16
33 H 0.12 0.41 7.89 -51.93 -0.41 0.00 16
34 H 0.11 0.40 8.14 -51.93 -0.42 -0.03 16
35 H 0.11 0.66 8.14 -51.93 -0.42 0.23 16
36 H 0.11 0.36 8.04 -51.93 -0.42 -0.06 16
37 H 0.11 0.78 8.14 -51.93 -0.42 0.35 16
38 H 0.10 1.02 8.14 -51.92 -0.42 0.60 16
39 H 0.07 0.93 7.33 -51.93 -0.38 0.54 16
40 H 0.09 1.35 8.14 -51.93 -0.42 0.92 16
41 H 0.09 1.43 8.08 -51.93 -0.42 1.01 16
42 H 0.06 0.92 7.39 -51.93 -0.38 0.54 16
43 H 0.39 9.62 7.90 -40.82 -0.32 9.30 16
44 H 0.27 7.07 8.31 -40.82 -0.34 6.73 16
45 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16
46 H 0.07 0.74 7.88 -51.93 -0.41 0.33 16
LS Contribution 396.37 15.07 5.97 5.97
Total: -1.00 -35.46 396.37 -7.76 -43.22
By element:
Atomic # 1 Polarization: 16.80 SS G_CDS: -6.76 Total: 10.03 kcal
Atomic # 6 Polarization: 7.18 SS G_CDS: -1.24 Total: 5.94 kcal
Atomic # 7 Polarization: -53.38 SS G_CDS: -0.96 Total: -54.33 kcal
Atomic # 8 Polarization: -23.67 SS G_CDS: 0.18 Total: -23.49 kcal
Atomic # 9 Polarization: -3.62 SS G_CDS: 0.08 Total: -3.54 kcal
Atomic # 14 Polarization: 21.22 SS G_CDS: -5.02 Total: 16.20 kcal
Total LS contribution 5.97 Total: 5.97 kcal
Total: -35.46 -7.76 -43.22 kcal
The number of atoms in the molecule is 46
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001717549085.mol2 46
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -68.399 kcal
(2) G-P(sol) polarization free energy of solvation -35.463 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.862 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.759 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.222 kcal
(6) G-S(sol) free energy of system = (1) + (5) -111.621 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.85 seconds