Wall clock time and date at job start Wed Apr 1 2020 03:18:01
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53006 * 1
3 3 H 1.09007 * 109.46514 * 2 1
4 4 N 1.46492 * 109.47275 * 119.99749 * 2 1 3
5 5 C 1.34772 * 120.00512 * 274.99985 * 4 2 1
6 6 O 1.21283 * 119.99504 * 5.35870 * 5 4 2
7 7 C 1.50704 * 120.00345 * 185.35561 * 5 4 2
8 8 C 1.52997 * 115.55935 * 269.84565 * 7 5 4
9 9 F 1.39898 * 109.47709 * 328.30187 * 8 7 5
10 10 F 1.39902 * 109.46919 * 88.30390 * 8 7 5
11 11 C 1.52994 * 117.49629 * 55.53591 * 7 5 4
12 12 C 1.53003 * 60.03191 * 107.47821 * 11 7 5
13 13 C 1.52999 * 109.47206 * 240.00451 * 2 1 3
14 14 C 1.53931 * 113.73471 * 158.76589 * 13 2 1
15 15 N 1.48194 * 86.09897 * 221.95192 * 14 13 2
16 16 C 1.46904 * 111.06724 * 137.51916 * 15 14 13
17 17 C 1.50702 * 109.46983 * 90.57070 * 16 15 14
18 18 O 1.21289 * 120.00018 * 359.97438 * 17 16 15
19 19 N 1.34777 * 119.99529 * 179.97438 * 17 16 15
20 20 C 1.37104 * 119.99639 * 179.97438 * 19 17 16
21 21 H 1.08006 * 119.99881 * 0.02562 * 20 19 17
22 22 C 1.38947 * 120.00130 * 180.02562 * 20 19 17
23 23 N 1.31415 * 119.99863 * 359.97438 * 22 20 19
24 24 Si 1.86796 * 120.00155 * 180.02562 * 22 20 19
25 25 H 1.48499 * 109.47508 * 59.99551 * 24 22 20
26 26 H 1.48500 * 109.47362 * 179.97438 * 24 22 20
27 27 H 1.48501 * 109.46929 * 299.99715 * 24 22 20
28 28 C 1.47956 * 90.79890 * 24.60104 * 15 14 13
29 29 H 1.08998 * 109.47113 * 59.99817 * 1 2 3
30 30 H 1.08998 * 109.46626 * 180.02562 * 1 2 3
31 31 H 1.08994 * 109.46994 * 300.00008 * 1 2 3
32 32 H 0.97002 * 119.99743 * 95.00631 * 4 2 1
33 33 H 1.09000 * 109.47293 * 208.29783 * 8 7 5
34 34 H 1.08998 * 117.49917 * 214.97906 * 11 7 5
35 35 H 1.09001 * 117.49907 * 359.97438 * 11 7 5
36 36 H 1.09000 * 117.49950 * 107.50291 * 12 11 7
37 37 H 1.08999 * 117.49939 * 252.52056 * 12 11 7
38 38 H 1.09008 * 112.93211 * 290.33054 * 13 2 1
39 39 H 1.09000 * 113.75789 * 336.23145 * 14 13 2
40 40 H 1.08996 * 113.76332 * 107.60523 * 14 13 2
41 41 H 1.09000 * 109.46677 * 210.56687 * 16 15 14
42 42 H 1.08997 * 109.47211 * 330.56579 * 16 15 14
43 43 H 0.96993 * 120.00767 * 359.97438 * 19 17 16
44 44 H 0.96995 * 119.99676 * 179.97438 * 23 22 20
45 45 H 1.09000 * 113.75989 * 221.08482 * 28 15 14
46 46 H 1.08997 * 113.86269 * 89.73072 * 28 15 14
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5301 0.0000 0.0000
3 1 1.8933 1.0278 0.0000
4 7 2.0184 -0.6905 1.1961
5 6 2.1472 -0.0182 2.3571
6 8 1.7681 1.1310 2.4375
7 6 2.7621 -0.6945 3.5553
8 6 1.7828 -1.4267 4.4749
9 9 0.5480 -0.7693 4.4594
10 9 1.6166 -2.7416 4.0268
11 6 4.1584 -1.2968 3.3872
12 6 3.9713 -0.0176 4.2055
13 6 2.0401 -0.7211 -1.2493
14 6 3.4849 -0.3523 -1.6311
15 7 2.9994 -0.3202 -3.0309
16 6 3.5499 0.8337 -3.7545
17 6 4.8445 0.4396 -4.4177
18 8 5.2672 -0.6910 -4.2989
19 7 5.5325 1.3436 -5.1429
20 6 6.7106 0.9853 -5.7458
21 1 7.0870 -0.0215 -5.6400
22 6 7.4203 1.9173 -6.4930
23 7 6.9620 3.1422 -6.6222
24 14 9.0249 1.4290 -7.3151
25 1 8.7744 0.3195 -8.2698
26 1 9.5812 2.5952 -8.0471
27 1 9.9947 0.9837 -6.2823
28 6 1.6208 -0.0474 -2.5683
29 1 -0.3633 0.5138 -0.8899
30 1 -0.3632 -1.0277 0.0005
31 1 -0.3633 0.5138 0.8899
32 1 2.2492 -1.6317 1.1525
33 1 2.1766 -1.4363 5.4912
34 1 4.3794 -2.2148 3.9318
35 1 4.6321 -1.2044 2.4099
36 1 4.0693 -0.0940 5.2884
37 1 4.3216 0.9165 3.7664
38 1 1.8528 -1.7948 -1.2262
39 1 3.8042 0.6196 -1.2547
40 1 4.2072 -1.1444 -1.4338
41 1 2.8381 1.1604 -4.5125
42 1 3.7338 1.6480 -3.0537
43 1 5.1944 2.2477 -5.2382
44 1 7.4576 3.7929 -7.1434
45 1 0.8563 -0.5963 -3.1182
46 1 1.3918 1.0134 -2.4661
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001717549085.mol2 46
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 03:18:01
Heat of formation + Delta-G solvation = -138.892657 kcal
Electronic energy + Delta-G solvation = -30400.842614 eV
Core-core repulsion = 25769.054945 eV
Total energy + Delta-G solvation = -4631.787669 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 345.165 amu
Computer time = 0.95 seconds
Orbital eigenvalues (eV)
-49.97968 -48.00959 -41.66379 -40.82434 -39.62002 -37.85810 -36.42534 -35.89915
-33.32403 -32.52824 -30.63359 -28.34141 -27.61144 -26.95781 -25.81458 -24.82465
-23.51135 -22.53736 -21.41129 -20.99587 -20.37700 -19.89448 -18.91032 -18.23704
-18.09560 -17.80801 -17.57406 -17.20187 -16.61090 -16.53766 -16.30579 -15.91901
-15.68795 -15.61723 -15.17475 -14.93269 -14.88372 -14.60636 -14.36998 -14.24681
-14.05144 -13.73229 -13.70481 -13.52214 -13.39900 -12.99874 -12.84016 -12.75055
-12.67789 -12.52730 -12.44759 -12.14545 -11.92610 -11.86201 -11.68755 -11.65066
-11.58802 -11.50062 -10.91285 -10.39252 -10.23108 -10.02360 -9.63200 -8.47348
-5.96484 1.37024 1.38823 1.40298 1.51567 1.90611 2.04818 2.27788
2.37572 2.65352 2.75805 3.17769 3.19414 3.27204 3.42510 3.45102
3.54156 3.59607 3.66832 4.05400 4.08456 4.13386 4.16706 4.20930
4.28569 4.38381 4.44077 4.46782 4.52030 4.55479 4.65425 4.73080
4.76098 4.82169 4.88274 4.93732 5.07138 5.15468 5.26249 5.38647
5.40973 5.46341 5.88683 6.07430 6.41393 6.59705 7.09635 7.11920
7.55480 8.11769 8.70003
Molecular weight = 345.17amu
Principal moments of inertia in cm(-1)
A = 0.017498 B = 0.002077 C = 0.001972
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1599.763300 B =13476.170249 C =14198.961779
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.156 4.156
2 C 0.156 3.844
3 H 0.070 0.930
4 N -0.707 5.707
5 C 0.549 3.451
6 O -0.568 6.568
7 C -0.253 4.253
8 C 0.307 3.693
9 F -0.217 7.217
10 F -0.205 7.205
11 C -0.126 4.126
12 C -0.121 4.121
13 C -0.099 4.099
14 C 0.012 3.988
15 N -0.481 5.481
16 C 0.023 3.977
17 C 0.442 3.558
18 O -0.618 6.618
19 N -0.577 5.577
20 C -0.334 4.334
21 H 0.078 0.922
22 C -0.014 4.014
23 N -0.922 5.922
24 Si 0.993 3.007
25 H -0.272 1.272
26 H -0.270 1.270
27 H -0.271 1.271
28 C 0.016 3.984
29 H 0.082 0.918
30 H 0.070 0.930
31 H 0.041 0.959
32 H 0.413 0.587
33 H 0.165 0.835
34 H 0.139 0.861
35 H 0.106 0.894
36 H 0.144 0.856
37 H 0.095 0.905
38 H 0.118 0.882
39 H 0.064 0.936
40 H 0.075 0.925
41 H 0.108 0.892
42 H 0.075 0.925
43 H 0.395 0.605
44 H 0.278 0.722
45 H 0.108 0.892
46 H 0.085 0.915
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -11.723 -7.230 23.669 27.385
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.214 4.214
2 C 0.052 3.948
3 H 0.088 0.912
4 N -0.358 5.358
5 C 0.335 3.665
6 O -0.447 6.447
7 C -0.257 4.257
8 C 0.254 3.746
9 F -0.199 7.199
10 F -0.186 7.186
11 C -0.163 4.163
12 C -0.158 4.158
13 C -0.118 4.118
14 C -0.117 4.117
15 N -0.204 5.204
16 C -0.109 4.109
17 C 0.230 3.770
18 O -0.503 6.503
19 N -0.215 5.215
20 C -0.463 4.463
21 H 0.096 0.904
22 C -0.214 4.214
23 N -0.563 5.563
24 Si 0.817 3.183
25 H -0.197 1.197
26 H -0.194 1.194
27 H -0.196 1.196
28 C -0.112 4.112
29 H 0.101 0.899
30 H 0.089 0.911
31 H 0.060 0.940
32 H 0.249 0.751
33 H 0.182 0.818
34 H 0.157 0.843
35 H 0.125 0.875
36 H 0.162 0.838
37 H 0.114 0.886
38 H 0.136 0.864
39 H 0.083 0.917
40 H 0.093 0.907
41 H 0.126 0.874
42 H 0.093 0.907
43 H 0.229 0.771
44 H 0.087 0.913
45 H 0.126 0.874
46 H 0.103 0.897
Dipole moment (debyes) X Y Z Total
from point charges -11.530 -7.541 23.192 26.976
hybrid contribution 0.470 0.904 -0.481 1.127
sum -11.059 -6.637 22.711 26.118
Atomic orbital electron populations
1.22081 0.93866 1.03029 1.02411 1.20975 0.95004 0.96010 0.82851
0.91230 1.45997 1.66265 1.14582 1.08938 1.19597 0.77521 0.85662
0.83748 1.90697 1.50169 1.19521 1.84295 1.22586 0.93281 1.09923
0.99883 1.21569 0.79373 0.73770 0.99926 1.92994 1.47543 1.81498
1.97822 1.93007 1.95890 1.37890 1.91814 1.23296 0.90096 0.99195
1.03682 1.23293 0.92750 0.97596 1.02156 1.23122 0.94130 1.01870
0.92659 1.24022 0.97693 1.01126 0.88817 1.68383 1.04258 1.35466
1.12249 1.22356 0.94788 0.93926 0.99846 1.20794 0.87701 0.85557
0.82998 1.90474 1.71827 1.22181 1.65868 1.41968 1.21133 1.12849
1.45511 1.19620 0.99499 0.98267 1.28950 0.90412 1.26056 1.02788
0.94802 0.97717 1.69670 1.41177 1.04000 1.41439 0.84986 0.77215
0.77884 0.78244 1.19681 1.19430 1.19623 1.24066 0.92138 1.01095
0.93938 0.89908 0.91106 0.93974 0.75051 0.81775 0.84269 0.87536
0.83781 0.88615 0.86389 0.91748 0.90693 0.87413 0.90708 0.77107
0.91293 0.87411 0.89676
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.16 -2.72 9.31 71.98 0.67 -2.05 16
2 C 0.16 3.01 2.34 44.99 0.11 3.11 16
3 H 0.07 1.64 7.50 -2.38 -0.02 1.62 16
4 N -0.71 -12.87 5.07 -442.53 -2.24 -15.12 16
5 C 0.55 11.99 6.26 87.66 0.55 12.54 16
6 O -0.57 -17.28 16.75 -3.04 -0.05 -17.33 16
7 C -0.25 -3.53 2.14 -52.91 -0.11 -3.64 16
8 C 0.31 3.79 5.37 71.98 0.39 4.17 16
9 F -0.22 -4.42 16.66 44.97 0.75 -3.67 16
10 F -0.20 -2.90 17.26 44.97 0.78 -2.12 16
11 C -0.13 -1.07 9.87 30.59 0.30 -0.77 16
12 C -0.12 -1.17 9.88 30.62 0.30 -0.87 16
13 C -0.10 -1.91 3.46 -10.15 -0.04 -1.95 16
14 C 0.01 0.34 7.53 86.36 0.65 0.99 16
15 N -0.48 -15.17 5.65 -911.74 -5.15 -20.32 16
16 C 0.02 0.79 5.28 85.56 0.45 1.25 16
17 C 0.44 21.65 7.83 87.66 0.69 22.33 16
18 O -0.62 -35.22 16.01 -3.06 -0.05 -35.27 16
19 N -0.58 -30.31 5.29 -306.98 -1.62 -31.94 16
20 C -0.33 -19.29 9.68 84.04 0.81 -18.48 16
21 H 0.08 4.78 7.16 -2.91 -0.02 4.76 16
22 C -0.01 -0.76 5.50 84.93 0.47 -0.30 16
23 N -0.92 -50.42 13.05 21.66 0.28 -50.14 16
24 Si 0.99 43.33 29.55 68.60 2.03 45.36 16
25 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16
26 H -0.27 -11.06 7.11 99.48 0.71 -10.35 16
27 H -0.27 -11.63 7.11 99.48 0.71 -10.93 16
28 C 0.02 0.34 6.65 86.41 0.57 0.92 16
29 H 0.08 1.22 7.51 -2.39 -0.02 1.20 16
30 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16
31 H 0.04 0.92 8.08 -2.39 -0.02 0.90 16
32 H 0.41 5.81 8.61 -92.71 -0.80 5.01 16
33 H 0.17 0.56 7.89 -2.39 -0.02 0.54 16
34 H 0.14 0.50 8.14 -2.39 -0.02 0.48 16
35 H 0.11 1.10 8.14 -2.39 -0.02 1.08 16
36 H 0.14 0.45 8.04 -2.39 -0.02 0.43 16
37 H 0.10 1.29 8.14 -2.39 -0.02 1.27 16
38 H 0.12 2.04 8.14 -2.38 -0.02 2.02 16
39 H 0.06 1.78 7.33 -2.39 -0.02 1.77 16
40 H 0.07 2.27 8.14 -2.39 -0.02 2.25 16
41 H 0.11 3.34 8.08 -2.39 -0.02 3.32 16
42 H 0.08 2.35 7.39 -2.39 -0.02 2.34 16
43 H 0.40 19.72 7.90 -92.71 -0.73 18.99 16
44 H 0.28 14.22 8.31 -92.71 -0.77 13.45 16
45 H 0.11 1.97 8.14 -2.39 -0.02 1.95 16
46 H 0.09 1.58 7.88 -2.39 -0.02 1.56 16
Total: -1.00 -79.59 396.37 0.02 -79.57
By element:
Atomic # 1 Polarization: 34.22 SS G_CDS: -0.50 Total: 33.72 kcal
Atomic # 6 Polarization: 11.45 SS G_CDS: 5.81 Total: 17.26 kcal
Atomic # 7 Polarization: -108.77 SS G_CDS: -8.73 Total: -117.51 kcal
Atomic # 8 Polarization: -52.50 SS G_CDS: -0.10 Total: -52.60 kcal
Atomic # 9 Polarization: -7.32 SS G_CDS: 1.53 Total: -5.79 kcal
Atomic # 14 Polarization: 43.33 SS G_CDS: 2.03 Total: 45.36 kcal
Total: -79.59 0.02 -79.57 kcal
The number of atoms in the molecule is 46
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001717549085.mol2 46
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -59.327 kcal
(2) G-P(sol) polarization free energy of solvation -79.591 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.918 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.025 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.566 kcal
(6) G-S(sol) free energy of system = (1) + (5) -138.893 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.96 seconds