Wall clock time and date at job start Wed Apr 1 2020 03:18:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08998 * 109.47506 * 2 1 4 4 N 1.46502 * 109.46771 * 239.99474 * 2 1 3 5 5 C 1.34772 * 119.99663 * 85.00453 * 4 2 1 6 6 O 1.21281 * 120.00143 * 359.97438 * 5 4 2 7 7 C 1.50697 * 120.00044 * 179.97438 * 5 4 2 8 8 H 1.09001 * 112.85161 * 309.66384 * 7 5 4 9 9 C 1.53787 * 113.61694 * 80.86212 * 7 5 4 10 10 C 1.53950 * 87.01963 * 139.95502 * 9 7 5 11 11 C 1.53778 * 113.61625 * 178.46986 * 7 5 4 12 12 F 1.39898 * 113.61659 * 334.56697 * 11 7 5 13 13 F 1.39899 * 113.61813 * 105.47039 * 11 7 5 14 14 C 1.53004 * 109.46924 * 120.00052 * 2 1 3 15 15 C 1.53942 * 113.73298 * 281.89277 * 14 2 1 16 16 N 1.47963 * 86.17995 * 221.92479 * 15 14 2 17 17 C 1.46894 * 111.00041 * 137.58017 * 16 15 14 18 18 C 1.50701 * 109.46905 * 70.63945 * 17 16 15 19 19 O 1.21287 * 120.00267 * 359.97438 * 18 17 16 20 20 N 1.34785 * 120.00003 * 179.97438 * 18 17 16 21 21 C 1.37095 * 119.99697 * 179.97438 * 20 18 17 22 22 H 1.07994 * 120.00260 * 0.02562 * 21 20 18 23 23 C 1.38954 * 119.99339 * 179.97438 * 21 20 18 24 24 N 1.31412 * 120.00452 * 0.02562 * 23 21 20 25 25 Si 1.86802 * 119.99680 * 180.02562 * 23 21 20 26 26 H 1.48507 * 109.47058 * 0.02562 * 25 23 21 27 27 H 1.48501 * 109.46939 * 120.00043 * 25 23 21 28 28 H 1.48501 * 109.47292 * 240.00239 * 25 23 21 29 29 C 1.47959 * 90.76428 * 24.68766 * 16 15 14 30 30 H 1.09002 * 109.47077 * 55.61994 * 1 2 3 31 31 H 1.09005 * 109.46924 * 295.62149 * 1 2 3 32 32 H 1.09000 * 109.47400 * 175.62948 * 1 2 3 33 33 H 0.96997 * 119.99603 * 265.00083 * 4 2 1 34 34 H 1.08995 * 113.61183 * 254.53550 * 9 7 5 35 35 H 1.08998 * 113.61087 * 25.43083 * 9 7 5 36 36 H 1.09005 * 113.66159 * 220.06829 * 10 9 7 37 37 H 1.09000 * 113.61782 * 89.20353 * 10 9 7 38 38 H 1.09003 * 112.94144 * 53.59715 * 14 2 1 39 39 H 1.09003 * 113.75426 * 336.24107 * 15 14 2 40 40 H 1.08994 * 113.76099 * 107.60194 * 15 14 2 41 41 H 1.09003 * 109.47165 * 190.63829 * 17 16 15 42 42 H 1.09003 * 109.47607 * 310.63952 * 17 16 15 43 43 H 0.96999 * 119.99833 * 0.02562 * 20 18 17 44 44 H 0.96999 * 120.00142 * 179.97438 * 24 23 21 45 45 H 1.09001 * 113.75964 * 220.99360 * 29 16 15 46 46 H 1.09007 * 113.85899 * 89.64256 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0183 -0.6907 -1.1961 5 6 2.1470 -0.0184 -2.3571 6 8 1.8582 1.1582 -2.4117 7 6 2.6498 -0.7287 -3.5874 8 1 3.5699 -1.2850 -3.4087 9 6 1.5673 -1.5453 -4.3130 10 6 2.1865 -1.0447 -5.6305 11 6 2.7040 0.1664 -4.8366 12 9 1.8046 1.2372 -4.7983 13 9 4.0000 0.5564 -5.1909 14 6 2.0400 -0.7213 1.2493 15 6 1.9727 0.1325 2.5285 16 7 3.3081 -0.4188 2.8480 17 6 4.1979 0.6267 3.3705 18 6 3.7454 1.0278 4.7509 19 8 2.7767 0.4954 5.2501 20 7 4.4172 1.9781 5.4307 21 6 4.0052 2.3433 6.6863 22 1 3.1426 1.8692 7.1307 23 6 4.6982 3.3226 7.3873 24 7 5.7481 3.8991 6.8467 25 14 4.1373 3.8198 9.0984 26 1 2.9400 3.0267 9.4768 27 1 5.2290 3.5620 10.0715 28 1 3.7972 5.2653 9.1074 29 6 3.5697 -0.6695 1.4135 30 1 -0.3633 0.5803 -0.8482 31 1 -0.3633 0.4444 0.9267 32 1 -0.3634 -1.0247 -0.0783 33 1 2.2489 -1.6319 -1.1525 34 1 1.6607 -2.6214 -4.1666 35 1 0.5551 -1.1799 -4.1395 36 1 1.4487 -0.7859 -6.3901 37 1 2.9795 -1.6877 -6.0124 38 1 1.6199 -1.7206 1.3642 39 1 1.9743 1.2061 2.3404 40 1 1.1919 -0.1776 3.2229 41 1 5.2178 0.2449 3.4191 42 1 4.1657 1.4942 2.7112 43 1 5.1917 2.4041 5.0314 44 1 6.2316 4.5830 7.3360 45 1 4.0649 -1.6205 1.2171 46 1 4.0387 0.1685 0.8978 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001717553637.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:18:17 Heat of formation + Delta-G solvation = -140.908487 kcal Electronic energy + Delta-G solvation = -30297.562046 eV Core-core repulsion = 25665.686965 eV Total energy + Delta-G solvation = -4631.875082 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.165 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -49.76594 -48.12690 -41.66901 -40.79908 -39.59398 -38.09770 -36.40326 -35.90891 -33.35542 -32.60574 -30.75388 -28.17951 -27.44299 -26.95793 -25.97165 -25.62829 -23.27277 -21.88259 -21.18308 -20.99188 -20.58911 -19.92167 -19.01054 -18.37577 -17.90394 -17.63790 -17.10503 -16.92928 -16.74472 -16.48392 -16.28671 -15.99380 -15.65664 -15.51351 -15.16941 -14.99782 -14.83484 -14.65887 -14.37746 -14.22523 -13.94992 -13.86096 -13.66240 -13.53637 -13.42761 -13.09800 -12.93768 -12.81530 -12.59967 -12.44172 -12.40917 -12.14686 -12.13837 -11.94432 -11.82573 -11.68366 -11.60940 -11.51619 -10.75229 -10.36849 -10.18579 -10.04741 -9.68966 -8.49563 -5.98633 1.34355 1.39429 1.49711 1.54029 1.97587 2.00982 2.26426 2.50882 2.78022 2.79204 3.16388 3.24046 3.32066 3.34798 3.42703 3.48648 3.66740 3.91283 4.09626 4.15494 4.21479 4.33090 4.36990 4.40101 4.46724 4.49572 4.50721 4.51336 4.54311 4.74800 4.76908 4.77977 4.85671 4.91949 4.97229 5.17746 5.19116 5.29963 5.37337 5.40669 5.48226 5.87167 6.04776 6.52462 6.56384 7.09315 7.22763 7.52042 8.07316 8.68185 Molecular weight = 345.17amu Principal moments of inertia in cm(-1) A = 0.021509 B = 0.001904 C = 0.001843 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1301.479644 B =14702.235524 C =15187.092618 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.157 3.843 3 H 0.058 0.942 4 N -0.699 5.699 5 C 0.515 3.485 6 O -0.576 6.576 7 C -0.163 4.163 8 H 0.174 0.826 9 C -0.104 4.104 10 C -0.147 4.147 11 C 0.242 3.758 12 F -0.189 7.189 13 F -0.205 7.205 14 C -0.097 4.097 15 C 0.022 3.978 16 N -0.476 5.476 17 C 0.022 3.978 18 C 0.440 3.560 19 O -0.616 6.616 20 N -0.576 5.576 21 C -0.332 4.332 22 H 0.079 0.921 23 C -0.016 4.016 24 N -0.921 5.921 25 Si 0.995 3.005 26 H -0.272 1.272 27 H -0.270 1.270 28 H -0.271 1.271 29 C 0.012 3.988 30 H 0.044 0.956 31 H 0.063 0.937 32 H 0.081 0.919 33 H 0.421 0.579 34 H 0.140 0.860 35 H 0.086 0.914 36 H 0.103 0.897 37 H 0.143 0.857 38 H 0.128 0.872 39 H 0.054 0.946 40 H 0.074 0.926 41 H 0.109 0.891 42 H 0.068 0.932 43 H 0.395 0.605 44 H 0.278 0.722 45 H 0.116 0.884 46 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.367 -15.939 -27.324 32.085 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.052 3.948 3 H 0.076 0.924 4 N -0.351 5.351 5 C 0.301 3.699 6 O -0.455 6.455 7 C -0.185 4.185 8 H 0.191 0.809 9 C -0.142 4.142 10 C -0.185 4.185 11 C 0.205 3.795 12 F -0.170 7.170 13 F -0.186 7.186 14 C -0.117 4.117 15 C -0.108 4.108 16 N -0.199 5.199 17 C -0.109 4.109 18 C 0.228 3.772 19 O -0.502 6.502 20 N -0.213 5.213 21 C -0.462 4.462 22 H 0.097 0.903 23 C -0.215 4.215 24 N -0.562 5.562 25 Si 0.818 3.182 26 H -0.197 1.197 27 H -0.195 1.195 28 H -0.196 1.196 29 C -0.116 4.116 30 H 0.063 0.937 31 H 0.082 0.918 32 H 0.100 0.900 33 H 0.259 0.741 34 H 0.158 0.842 35 H 0.105 0.895 36 H 0.122 0.878 37 H 0.161 0.839 38 H 0.146 0.854 39 H 0.072 0.928 40 H 0.093 0.907 41 H 0.127 0.873 42 H 0.086 0.914 43 H 0.229 0.771 44 H 0.087 0.913 45 H 0.134 0.866 46 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -5.990 -15.788 -26.456 31.386 hybrid contribution 0.543 1.920 0.540 2.067 sum -5.448 -13.868 -25.916 29.894 Atomic orbital electron populations 1.22082 0.94314 1.03263 1.01843 1.20819 0.94727 0.95876 0.83424 0.92372 1.45789 1.66427 1.14820 1.08081 1.20668 0.77331 0.86707 0.85150 1.90804 1.51340 1.18042 1.85316 1.24258 1.05682 0.98048 0.90480 0.80880 1.22840 0.96411 1.02978 0.91928 1.24163 1.03130 0.92402 0.98789 1.22723 0.73324 0.83987 0.99443 1.93040 1.67024 1.59821 1.97104 1.92988 1.39384 1.93214 1.92990 1.23194 0.95802 1.00955 0.91716 1.23712 0.93558 0.97369 0.96125 1.68411 1.02367 1.32644 1.16493 1.22346 0.99758 0.95814 0.93019 1.20723 0.85378 0.82157 0.88955 1.90480 1.30551 1.57534 1.71660 1.41977 1.28613 1.34939 1.15765 1.19699 1.13257 1.20133 0.93078 0.90265 1.26089 0.95690 0.95993 1.03737 1.69683 1.19297 1.27143 1.40120 0.84847 0.78272 0.78122 0.76942 1.19703 1.19480 1.19616 1.24084 0.96438 1.03429 0.87622 0.93715 0.91786 0.90001 0.74143 0.84217 0.89526 0.87816 0.83851 0.85383 0.92808 0.90714 0.87314 0.91428 0.77125 0.91285 0.86598 0.91311 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.84 9.46 71.98 0.68 -2.16 16 2 C 0.16 2.94 2.29 44.99 0.10 3.04 16 3 H 0.06 1.50 7.48 -2.39 -0.02 1.48 16 4 N -0.70 -9.16 4.95 -442.53 -2.19 -11.35 16 5 C 0.51 9.51 7.26 87.66 0.64 10.15 16 6 O -0.58 -17.49 14.44 -3.03 -0.04 -17.53 16 7 C -0.16 -1.66 4.03 -11.01 -0.04 -1.70 16 8 H 0.17 0.58 8.14 -2.39 -0.02 0.56 16 9 C -0.10 -0.40 7.62 31.18 0.24 -0.16 16 10 C -0.15 -0.80 7.87 31.18 0.25 -0.56 16 11 C 0.24 3.96 3.01 31.12 0.09 4.06 16 12 F -0.19 -4.84 15.23 44.97 0.68 -4.16 16 13 F -0.20 -4.14 17.41 44.97 0.78 -3.35 16 14 C -0.10 -1.84 3.35 -10.14 -0.03 -1.88 16 15 C 0.02 0.66 6.13 86.41 0.53 1.19 16 16 N -0.48 -14.99 5.95 -912.30 -5.43 -20.42 16 17 C 0.02 0.80 5.31 85.56 0.45 1.25 16 18 C 0.44 21.60 7.59 87.66 0.67 22.26 16 19 O -0.62 -34.67 15.12 -3.05 -0.05 -34.72 16 20 N -0.58 -30.47 5.29 -306.98 -1.62 -32.09 16 21 C -0.33 -19.28 9.68 84.04 0.81 -18.47 16 22 H 0.08 4.90 7.16 -2.91 -0.02 4.87 16 23 C -0.02 -0.85 5.50 84.93 0.47 -0.38 16 24 N -0.92 -50.81 13.05 21.66 0.28 -50.53 16 25 Si 0.99 43.74 29.55 68.60 2.03 45.77 16 26 H -0.27 -12.07 7.11 99.48 0.71 -11.37 16 27 H -0.27 -11.31 7.11 99.48 0.71 -10.60 16 28 H -0.27 -11.41 7.11 99.48 0.71 -10.70 16 29 C 0.01 0.26 7.41 86.41 0.64 0.90 16 30 H 0.04 0.96 8.14 -2.39 -0.02 0.94 16 31 H 0.06 1.25 7.99 -2.38 -0.02 1.23 16 32 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 33 H 0.42 2.21 8.60 -92.71 -0.80 1.41 16 34 H 0.14 -0.50 8.14 -2.39 -0.02 -0.52 16 35 H 0.09 0.60 8.09 -2.39 -0.02 0.58 16 36 H 0.10 0.51 8.14 -2.38 -0.02 0.50 16 37 H 0.14 0.02 8.14 -2.39 -0.02 0.00 16 38 H 0.13 1.91 8.14 -2.39 -0.02 1.89 16 39 H 0.05 1.74 7.67 -2.39 -0.02 1.72 16 40 H 0.07 2.55 8.09 -2.39 -0.02 2.53 16 41 H 0.11 3.48 8.14 -2.39 -0.02 3.46 16 42 H 0.07 2.23 7.69 -2.39 -0.02 2.21 16 43 H 0.40 19.97 7.90 -92.71 -0.73 19.24 16 44 H 0.28 14.27 8.31 -92.71 -0.77 13.50 16 45 H 0.12 1.76 8.14 -2.39 -0.02 1.75 16 46 H 0.07 1.44 7.75 -2.38 -0.02 1.42 16 Total: -1.00 -83.09 388.85 -0.57 -83.66 By element: Atomic # 1 Polarization: 27.68 SS G_CDS: -0.51 Total: 27.17 kcal Atomic # 6 Polarization: 12.06 SS G_CDS: 5.49 Total: 17.54 kcal Atomic # 7 Polarization: -105.43 SS G_CDS: -8.96 Total: -114.38 kcal Atomic # 8 Polarization: -52.16 SS G_CDS: -0.09 Total: -52.25 kcal Atomic # 9 Polarization: -8.98 SS G_CDS: 1.47 Total: -7.51 kcal Atomic # 14 Polarization: 43.74 SS G_CDS: 2.03 Total: 45.77 kcal Total: -83.09 -0.57 -83.66 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717553637.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.248 kcal (2) G-P(sol) polarization free energy of solvation -83.094 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.342 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.567 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.661 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.908 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds