Wall clock time and date at job start Wed Apr 1 2020 03:18:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.47398 * 2 1 4 4 N 1.46500 * 109.47023 * 120.00071 * 2 1 3 5 5 C 1.34779 * 119.99793 * 274.99565 * 4 2 1 6 6 O 1.21279 * 120.00185 * 0.02562 * 5 4 2 7 7 C 1.50702 * 119.99614 * 179.97438 * 5 4 2 8 8 H 1.08996 * 112.85151 * 311.19871 * 7 5 4 9 9 C 1.53779 * 113.61111 * 82.50817 * 7 5 4 10 10 C 1.53785 * 87.08175 * 139.97840 * 9 7 5 11 11 C 1.53776 * 113.61089 * 180.02562 * 7 5 4 12 12 F 1.39903 * 113.61909 * 334.57113 * 11 7 5 13 13 F 1.39908 * 113.61452 * 105.47608 * 11 7 5 14 14 C 1.52997 * 109.47060 * 239.99831 * 2 1 3 15 15 C 1.53937 * 113.73709 * 158.76888 * 14 2 1 16 16 N 1.48189 * 86.10157 * 221.95640 * 15 14 2 17 17 C 1.46903 * 111.07054 * 137.51663 * 16 15 14 18 18 C 1.50701 * 109.46996 * 90.56693 * 17 16 15 19 19 O 1.21294 * 119.99775 * 0.02562 * 18 17 16 20 20 N 1.34773 * 120.00321 * 180.02562 * 18 17 16 21 21 C 1.37097 * 120.00499 * 180.02562 * 20 18 17 22 22 H 1.08000 * 119.99806 * 359.97438 * 21 20 18 23 23 C 1.38953 * 119.99873 * 179.97438 * 21 20 18 24 24 N 1.31407 * 120.00353 * 359.97438 * 23 21 20 25 25 Si 1.86805 * 119.99450 * 179.97438 * 23 21 20 26 26 H 1.48500 * 109.47224 * 359.97438 * 25 23 21 27 27 H 1.48492 * 109.47023 * 120.00197 * 25 23 21 28 28 H 1.48506 * 109.46930 * 240.00043 * 25 23 21 29 29 C 1.47962 * 90.79972 * 24.60062 * 16 15 14 30 30 H 1.08992 * 109.47399 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.46724 * 300.00478 * 1 2 3 32 32 H 1.09001 * 109.47194 * 59.99819 * 1 2 3 33 33 H 0.97004 * 120.00223 * 94.99655 * 4 2 1 34 34 H 1.09008 * 113.61245 * 254.52194 * 9 7 5 35 35 H 1.08998 * 113.61989 * 25.42690 * 9 7 5 36 36 H 1.08999 * 113.61150 * 220.01446 * 10 9 7 37 37 H 1.08999 * 113.69028 * 89.12393 * 10 9 7 38 38 H 1.09001 * 112.93780 * 290.33896 * 14 2 1 39 39 H 1.09004 * 113.75538 * 336.23691 * 15 14 2 40 40 H 1.08998 * 113.76129 * 107.60316 * 15 14 2 41 41 H 1.08996 * 109.47404 * 210.56653 * 17 16 15 42 42 H 1.09002 * 109.47331 * 330.57003 * 17 16 15 43 43 H 0.97005 * 119.99513 * 359.97438 * 20 18 17 44 44 H 0.97000 * 119.99901 * 180.02562 * 24 23 21 45 45 H 1.08996 * 113.75533 * 221.08508 * 29 16 15 46 46 H 1.08995 * 113.86286 * 89.73231 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 2.1471 -0.0182 2.3571 6 8 1.8583 1.1584 2.4117 7 6 2.6489 -0.7288 3.5877 8 1 2.1340 -1.6718 3.7715 9 6 4.1813 -0.8383 3.6539 10 6 4.0591 -0.5397 5.1575 11 6 2.7380 0.1758 4.8280 12 9 2.8961 1.5319 4.5226 13 9 1.7256 -0.0568 5.7653 14 6 2.0400 -0.7213 -1.2492 15 6 3.4849 -0.3526 -1.6311 16 7 2.9994 -0.3205 -3.0309 17 6 3.5499 0.8333 -3.7545 18 6 4.8445 0.4392 -4.4177 19 8 5.2667 -0.6917 -4.2995 20 7 5.5332 1.3433 -5.1421 21 6 6.7107 0.9847 -5.7458 22 1 7.0866 -0.0223 -5.6406 23 6 7.4203 1.9167 -6.4931 24 7 6.9627 3.1418 -6.6215 25 14 9.0251 1.4281 -7.3151 26 1 9.3192 0.0031 -7.0187 27 1 8.9058 1.6144 -8.7834 28 1 10.1262 2.2787 -6.7960 29 6 1.6207 -0.0475 -2.5683 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8900 32 1 -0.3634 0.5139 -0.8900 33 1 2.2490 -1.6318 1.1526 34 1 4.5574 -1.8381 3.4365 35 1 4.6994 -0.0592 3.0947 36 1 4.8347 0.1268 5.5347 37 1 3.9312 -1.4309 5.7720 38 1 1.8526 -1.7948 -1.2261 39 1 3.8042 0.6193 -1.2547 40 1 4.2071 -1.1447 -1.4337 41 1 2.8382 1.1601 -4.5126 42 1 3.7339 1.6477 -3.0538 43 1 5.1953 2.2476 -5.2369 44 1 7.4579 3.7923 -7.1435 45 1 0.8563 -0.5963 -3.1182 46 1 1.3918 1.0133 -2.4661 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001717553639.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:18:25 Heat of formation + Delta-G solvation = -139.914785 kcal Electronic energy + Delta-G solvation = -30289.891777 eV Core-core repulsion = 25658.059785 eV Total energy + Delta-G solvation = -4631.831992 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.165 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -49.78785 -48.14305 -41.61493 -40.77423 -39.61488 -38.13545 -36.38520 -35.89434 -33.32542 -32.61220 -30.68649 -28.23084 -27.52028 -26.87225 -25.98801 -25.58715 -23.35245 -21.85354 -21.22185 -20.98802 -20.52404 -19.90202 -19.01389 -18.36198 -17.80325 -17.74674 -17.16186 -16.98376 -16.60337 -16.47423 -16.34322 -15.81215 -15.78745 -15.57012 -15.14509 -14.94236 -14.84260 -14.61413 -14.39586 -14.31111 -14.04878 -13.86273 -13.68499 -13.53257 -13.40136 -12.99406 -12.83431 -12.74309 -12.66920 -12.45295 -12.42047 -12.17042 -12.12947 -11.84594 -11.81465 -11.71801 -11.64895 -11.51101 -10.76469 -10.38534 -10.17524 -10.02156 -9.61468 -8.47610 -5.96579 1.35724 1.40496 1.47411 1.55074 1.98071 2.04710 2.27838 2.49053 2.74587 2.77531 3.18383 3.26386 3.28487 3.39944 3.40802 3.48443 3.64404 3.87509 4.13635 4.16994 4.22738 4.31907 4.33743 4.42284 4.46186 4.47016 4.49789 4.51131 4.53006 4.73566 4.76482 4.79593 4.84604 4.88438 4.98213 5.15338 5.19298 5.30471 5.39439 5.42940 5.51607 5.89483 6.08139 6.49358 6.59569 7.12110 7.19510 7.55549 8.11651 8.70221 Molecular weight = 345.17amu Principal moments of inertia in cm(-1) A = 0.014936 B = 0.002073 C = 0.001926 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1874.239166 B =13502.245235 C =14536.620035 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.155 3.845 3 H 0.063 0.937 4 N -0.704 5.704 5 C 0.515 3.485 6 O -0.573 6.573 7 C -0.161 4.161 8 H 0.176 0.824 9 C -0.112 4.112 10 C -0.147 4.147 11 C 0.247 3.753 12 F -0.188 7.188 13 F -0.201 7.201 14 C -0.095 4.095 15 C 0.011 3.989 16 N -0.481 5.481 17 C 0.022 3.978 18 C 0.443 3.557 19 O -0.617 6.617 20 N -0.578 5.578 21 C -0.332 4.332 22 H 0.078 0.922 23 C -0.015 4.015 24 N -0.922 5.922 25 Si 0.994 3.006 26 H -0.272 1.272 27 H -0.270 1.270 28 H -0.271 1.271 29 C 0.014 3.986 30 H 0.077 0.923 31 H 0.041 0.959 32 H 0.077 0.923 33 H 0.418 0.582 34 H 0.135 0.865 35 H 0.080 0.920 36 H 0.101 0.899 37 H 0.146 0.854 38 H 0.124 0.876 39 H 0.060 0.940 40 H 0.076 0.924 41 H 0.107 0.893 42 H 0.073 0.927 43 H 0.395 0.605 44 H 0.277 0.723 45 H 0.108 0.892 46 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.255 -9.482 22.396 27.234 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.050 3.950 3 H 0.081 0.919 4 N -0.356 5.356 5 C 0.301 3.699 6 O -0.452 6.452 7 C -0.183 4.183 8 H 0.193 0.807 9 C -0.149 4.149 10 C -0.185 4.185 11 C 0.210 3.790 12 F -0.169 7.169 13 F -0.182 7.182 14 C -0.114 4.114 15 C -0.118 4.118 16 N -0.203 5.203 17 C -0.109 4.109 18 C 0.230 3.770 19 O -0.503 6.503 20 N -0.216 5.216 21 C -0.461 4.461 22 H 0.096 0.904 23 C -0.215 4.215 24 N -0.564 5.564 25 Si 0.817 3.183 26 H -0.197 1.197 27 H -0.195 1.195 28 H -0.196 1.196 29 C -0.114 4.114 30 H 0.096 0.904 31 H 0.060 0.940 32 H 0.096 0.904 33 H 0.256 0.744 34 H 0.153 0.847 35 H 0.099 0.901 36 H 0.120 0.880 37 H 0.164 0.836 38 H 0.142 0.858 39 H 0.079 0.921 40 H 0.095 0.905 41 H 0.125 0.875 42 H 0.091 0.909 43 H 0.229 0.771 44 H 0.087 0.913 45 H 0.127 0.873 46 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -11.995 -9.737 21.949 26.841 hybrid contribution 0.499 1.422 -0.216 1.523 sum -11.495 -8.314 21.732 25.953 Atomic orbital electron populations 1.22077 0.93671 1.03326 1.02237 1.20923 0.95004 0.96005 0.83110 0.91872 1.45906 1.66330 1.14791 1.08600 1.20614 0.77058 0.86821 0.85372 1.90788 1.51123 1.17767 1.85543 1.24231 1.01883 1.01490 0.90679 0.80656 1.22807 0.90311 1.06322 0.95484 1.24135 0.92850 1.02473 0.99045 1.22610 0.89382 0.78541 0.88453 1.93048 1.95637 1.34955 1.93259 1.92989 1.63868 1.93971 1.67398 1.23122 0.93730 1.02070 0.92525 1.24028 0.97982 1.01048 0.88753 1.68386 1.04321 1.35332 1.12311 1.22352 0.94783 0.93984 0.99815 1.20795 0.87688 0.85559 0.82964 1.90473 1.71840 1.22127 1.65838 1.41987 1.21184 1.12826 1.45556 1.19690 0.99452 0.98229 1.28744 0.90376 1.26067 1.02814 0.94805 0.97781 1.69681 1.41146 1.04041 1.41491 0.84861 0.77136 0.78263 0.78015 1.19701 1.19538 1.19585 1.24074 0.92102 1.00997 0.94273 0.90407 0.94011 0.90383 0.74434 0.84657 0.90130 0.88020 0.83635 0.85795 0.92137 0.90530 0.87476 0.90907 0.77141 0.91323 0.87330 0.90029 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.31 9.31 71.98 0.67 -1.64 16 2 C 0.15 2.66 2.38 44.99 0.11 2.77 16 3 H 0.06 1.47 7.42 -2.39 -0.02 1.46 16 4 N -0.70 -10.11 5.08 -442.53 -2.25 -12.36 16 5 C 0.51 10.08 7.27 87.66 0.64 10.72 16 6 O -0.57 -17.40 14.41 -3.03 -0.04 -17.44 16 7 C -0.16 -1.92 4.03 -11.02 -0.04 -1.96 16 8 H 0.18 0.75 8.14 -2.39 -0.02 0.73 16 9 C -0.11 -0.90 7.61 31.12 0.24 -0.67 16 10 C -0.15 -1.20 7.87 31.13 0.25 -0.96 16 11 C 0.25 4.33 3.02 31.13 0.09 4.42 16 12 F -0.19 -5.07 15.20 44.97 0.68 -4.38 16 13 F -0.20 -4.00 17.41 44.97 0.78 -3.22 16 14 C -0.10 -1.67 3.46 -10.15 -0.04 -1.71 16 15 C 0.01 0.29 7.53 86.37 0.65 0.94 16 16 N -0.48 -14.88 5.65 -911.66 -5.15 -20.03 16 17 C 0.02 0.79 5.28 85.56 0.45 1.24 16 18 C 0.44 21.64 7.83 87.66 0.69 22.32 16 19 O -0.62 -35.01 16.01 -3.07 -0.05 -35.06 16 20 N -0.58 -30.40 5.29 -306.98 -1.62 -32.02 16 21 C -0.33 -19.17 9.68 84.04 0.81 -18.35 16 22 H 0.08 4.82 7.16 -2.91 -0.02 4.79 16 23 C -0.02 -0.83 5.50 84.93 0.47 -0.36 16 24 N -0.92 -50.58 13.05 21.66 0.28 -50.30 16 25 Si 0.99 43.39 29.55 68.60 2.03 45.41 16 26 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 27 H -0.27 -11.27 7.11 99.48 0.71 -10.56 16 28 H -0.27 -11.29 7.11 99.48 0.71 -10.58 16 29 C 0.01 0.29 6.65 86.41 0.57 0.86 16 30 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16 31 H 0.04 0.79 8.14 -2.39 -0.02 0.78 16 32 H 0.08 1.03 7.52 -2.39 -0.02 1.02 16 33 H 0.42 3.21 8.60 -92.71 -0.80 2.41 16 34 H 0.14 0.21 8.14 -2.38 -0.02 0.19 16 35 H 0.08 1.02 8.09 -2.39 -0.02 1.01 16 36 H 0.10 0.83 8.14 -2.39 -0.02 0.81 16 37 H 0.15 0.33 8.14 -2.39 -0.02 0.31 16 38 H 0.12 1.77 8.14 -2.39 -0.02 1.75 16 39 H 0.06 1.69 7.33 -2.38 -0.02 1.67 16 40 H 0.08 2.23 8.14 -2.39 -0.02 2.21 16 41 H 0.11 3.32 8.08 -2.39 -0.02 3.30 16 42 H 0.07 2.32 7.39 -2.39 -0.02 2.30 16 43 H 0.39 19.78 7.90 -92.70 -0.73 19.05 16 44 H 0.28 14.18 8.31 -92.71 -0.77 13.41 16 45 H 0.11 1.87 8.14 -2.39 -0.02 1.85 16 46 H 0.08 1.50 7.88 -2.39 -0.02 1.48 16 Total: -1.00 -82.53 389.34 -0.28 -82.81 By element: Atomic # 1 Polarization: 29.46 SS G_CDS: -0.50 Total: 28.96 kcal Atomic # 6 Polarization: 12.07 SS G_CDS: 5.55 Total: 17.62 kcal Atomic # 7 Polarization: -105.97 SS G_CDS: -8.74 Total: -114.70 kcal Atomic # 8 Polarization: -52.41 SS G_CDS: -0.09 Total: -52.50 kcal Atomic # 9 Polarization: -9.06 SS G_CDS: 1.47 Total: -7.60 kcal Atomic # 14 Polarization: 43.39 SS G_CDS: 2.03 Total: 45.41 kcal Total: -82.53 -0.28 -82.81 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717553639.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.102 kcal (2) G-P(sol) polarization free energy of solvation -82.529 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.631 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.284 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.813 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.915 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds