Wall clock time and date at job start Wed Apr 1 2020 03:18:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08997 * 109.46917 * 2 1 4 4 N 1.46499 * 109.47533 * 239.99529 * 2 1 3 5 5 C 1.34779 * 119.99849 * 84.99957 * 4 2 1 6 6 O 1.21278 * 119.99956 * 0.02562 * 5 4 2 7 7 C 1.50704 * 119.99774 * 180.02562 * 5 4 2 8 8 H 1.08992 * 112.85130 * 50.32568 * 7 5 4 9 9 C 1.53785 * 113.60858 * 279.13312 * 7 5 4 10 10 C 1.53954 * 87.01929 * 220.04909 * 9 7 5 11 11 C 1.53778 * 113.61136 * 181.52876 * 7 5 4 12 12 F 1.39898 * 113.61494 * 254.52414 * 11 7 5 13 13 F 1.39902 * 113.61596 * 25.42916 * 11 7 5 14 14 C 1.53001 * 109.46920 * 119.99357 * 2 1 3 15 15 C 1.53930 * 113.73664 * 282.06055 * 14 2 1 16 16 N 1.48187 * 86.10460 * 221.95715 * 15 14 2 17 17 C 1.46897 * 111.07473 * 137.51709 * 16 15 14 18 18 C 1.50704 * 109.47008 * 70.56530 * 17 16 15 19 19 O 1.21296 * 119.99622 * 0.02562 * 18 17 16 20 20 N 1.34777 * 120.00002 * 180.02562 * 18 17 16 21 21 C 1.37098 * 119.99674 * 180.02562 * 20 18 17 22 22 H 1.07999 * 120.00253 * 0.02562 * 21 20 18 23 23 C 1.38954 * 119.99709 * 179.97438 * 21 20 18 24 24 N 1.31407 * 119.99918 * 0.02562 * 23 21 20 25 25 Si 1.86798 * 119.99780 * 179.97438 * 23 21 20 26 26 H 1.48497 * 109.47329 * 0.02562 * 25 23 21 27 27 H 1.48505 * 109.46977 * 120.00599 * 25 23 21 28 28 H 1.48496 * 109.47333 * 240.00113 * 25 23 21 29 29 C 1.47963 * 90.79594 * 24.59820 * 16 15 14 30 30 H 1.09004 * 109.47177 * 175.99332 * 1 2 3 31 31 H 1.08999 * 109.47431 * 295.99555 * 1 2 3 32 32 H 1.09005 * 109.46914 * 55.99617 * 1 2 3 33 33 H 0.96998 * 119.99861 * 264.99945 * 4 2 1 34 34 H 1.09004 * 113.61629 * 334.56963 * 9 7 5 35 35 H 1.08997 * 113.61379 * 105.47201 * 9 7 5 36 36 H 1.08998 * 113.54057 * 270.81807 * 10 9 7 37 37 H 1.08996 * 113.74257 * 139.94397 * 10 9 7 38 38 H 1.08999 * 112.93861 * 53.62696 * 14 2 1 39 39 H 1.09004 * 113.75739 * 336.23962 * 15 14 2 40 40 H 1.09001 * 113.76225 * 107.60077 * 15 14 2 41 41 H 1.08994 * 109.47624 * 190.57158 * 17 16 15 42 42 H 1.09004 * 109.47382 * 310.56781 * 17 16 15 43 43 H 0.97001 * 120.00065 * 359.97438 * 20 18 17 44 44 H 0.97006 * 120.00006 * 179.97438 * 24 23 21 45 45 H 1.08997 * 113.76028 * 221.08498 * 29 16 15 46 46 H 1.08998 * 113.86218 * 89.73354 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0184 -0.6907 -1.1961 5 6 2.1472 -0.0184 -2.3571 6 8 1.8591 1.1584 -2.4115 7 6 2.6491 -0.7290 -3.5876 8 1 2.1164 -1.6590 -3.7862 9 6 4.1794 -0.8736 -3.6342 10 6 4.0831 -0.5571 -5.1378 11 6 2.7741 0.1843 -4.8185 12 9 1.7691 -0.0176 -5.7705 13 9 2.9580 1.5338 -4.4986 14 6 2.0399 -0.7211 1.2493 15 6 1.9689 0.1312 2.5291 16 7 3.3075 -0.4184 2.8484 17 6 4.1969 0.6274 3.3712 18 6 3.7439 1.0282 4.7515 19 8 2.7756 0.4948 5.2507 20 7 4.4145 1.9794 5.4312 21 6 4.0027 2.3436 6.6871 22 1 3.1411 1.8681 7.1320 23 6 4.6945 3.3239 7.3880 24 7 5.7431 3.9021 6.8469 25 14 4.1329 3.8207 9.0989 26 1 2.9366 3.0265 9.4774 27 1 5.2249 3.5645 10.0722 28 1 3.7912 5.2658 9.1076 29 6 3.5696 -0.6689 1.4139 30 1 -0.3634 -1.0252 -0.0718 31 1 -0.3634 0.4504 0.9237 32 1 -0.3633 0.5748 -0.8520 33 1 2.2491 -1.6318 -1.1524 34 1 4.7076 -0.1120 -3.0606 35 1 4.5292 -1.8837 -3.4213 36 1 3.9436 -1.4407 -5.7606 37 1 4.8771 0.0955 -5.5006 38 1 1.6203 -1.7205 1.3640 39 1 1.9682 1.2051 2.3421 40 1 1.1878 -0.1814 3.2222 41 1 5.2168 0.2461 3.4200 42 1 4.1646 1.4949 2.7120 43 1 5.1891 2.4057 5.0321 44 1 6.2259 4.5867 7.3361 45 1 4.0651 -1.6196 1.2175 46 1 4.0383 0.1693 0.8983 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001717553640.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:18:31 Heat of formation + Delta-G solvation = -112.954155 kcal Electronic energy + Delta-G solvation = -30369.155300 eV Core-core repulsion = 25738.492409 eV Total energy + Delta-G solvation = -4630.662891 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.165 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -49.07876 -47.39969 -40.69539 -39.78930 -37.90329 -37.44006 -35.42592 -33.89472 -31.73490 -31.20678 -29.52372 -27.64066 -25.92221 -25.77364 -25.49268 -24.15201 -22.32647 -21.06475 -20.51239 -19.70041 -19.20801 -18.35501 -17.92397 -17.62300 -16.96283 -16.43082 -16.24987 -15.93047 -15.53317 -15.19081 -15.09497 -14.68181 -14.54372 -14.25955 -14.06148 -14.00659 -13.72627 -13.62418 -13.57034 -13.35139 -12.98945 -12.71145 -12.51006 -12.38249 -12.21969 -11.97761 -11.89979 -11.73171 -11.59101 -11.43449 -11.19425 -11.09022 -10.93366 -10.82389 -10.53396 -10.34309 -10.22212 -9.97488 -9.51655 -9.37417 -8.65748 -8.23249 -7.96696 -6.41981 -3.82777 2.20444 2.64897 3.05726 3.16155 3.23888 3.26730 3.33927 3.78846 3.85373 3.87674 3.88379 3.97348 4.20610 4.30493 4.48859 4.58274 4.70845 4.91241 4.94592 4.96074 5.02480 5.05171 5.12672 5.15880 5.21504 5.26767 5.42547 5.50516 5.53926 5.54978 5.67277 5.70926 5.76578 5.83396 5.99287 6.06772 6.20995 6.25747 6.31907 6.60724 7.15145 7.19315 7.55117 7.88887 8.05601 8.60913 9.17703 9.53859 10.05330 10.75878 Molecular weight = 345.17amu Principal moments of inertia in cm(-1) A = 0.020469 B = 0.001944 C = 0.001889 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1367.600353 B =14403.137739 C =14819.148174 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.150 3.850 3 H 0.089 0.911 4 N -0.717 5.717 5 C 0.520 3.480 6 O -0.519 6.519 7 C -0.171 4.171 8 H 0.140 0.860 9 C -0.119 4.119 10 C -0.165 4.165 11 C 0.280 3.720 12 F -0.190 7.190 13 F -0.158 7.158 14 C -0.129 4.129 15 C 0.034 3.966 16 N -0.453 5.453 17 C 0.010 3.990 18 C 0.444 3.556 19 O -0.580 6.580 20 N -0.565 5.565 21 C -0.298 4.298 22 H 0.103 0.897 23 C 0.021 3.979 24 N -0.902 5.902 25 Si 0.929 3.071 26 H -0.268 1.268 27 H -0.281 1.281 28 H -0.281 1.281 29 C 0.005 3.995 30 H 0.057 0.943 31 H 0.071 0.929 32 H 0.059 0.941 33 H 0.401 0.599 34 H 0.100 0.900 35 H 0.100 0.900 36 H 0.115 0.885 37 H 0.100 0.900 38 H 0.104 0.896 39 H 0.068 0.932 40 H 0.097 0.903 41 H 0.090 0.910 42 H 0.053 0.947 43 H 0.392 0.608 44 H 0.271 0.729 45 H 0.086 0.914 46 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.452 -12.437 -25.163 28.176 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.045 3.955 3 H 0.107 0.893 4 N -0.368 5.368 5 C 0.305 3.695 6 O -0.394 6.394 7 C -0.193 4.193 8 H 0.158 0.842 9 C -0.156 4.156 10 C -0.203 4.203 11 C 0.243 3.757 12 F -0.171 7.171 13 F -0.138 7.138 14 C -0.148 4.148 15 C -0.096 4.096 16 N -0.175 5.175 17 C -0.122 4.122 18 C 0.229 3.771 19 O -0.463 6.463 20 N -0.202 5.202 21 C -0.428 4.428 22 H 0.121 0.879 23 C -0.180 4.180 24 N -0.543 5.543 25 Si 0.757 3.243 26 H -0.192 1.192 27 H -0.207 1.207 28 H -0.208 1.208 29 C -0.124 4.124 30 H 0.076 0.924 31 H 0.090 0.910 32 H 0.078 0.922 33 H 0.235 0.765 34 H 0.119 0.881 35 H 0.119 0.881 36 H 0.134 0.866 37 H 0.118 0.882 38 H 0.122 0.878 39 H 0.086 0.914 40 H 0.115 0.885 41 H 0.108 0.892 42 H 0.071 0.929 43 H 0.225 0.775 44 H 0.081 0.919 45 H 0.105 0.895 46 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -3.140 -12.250 -24.283 27.379 hybrid contribution 0.335 1.004 0.078 1.062 sum -2.804 -11.246 -24.206 26.838 Atomic orbital electron populations 1.22139 0.94797 1.02200 1.02899 1.21096 0.94433 0.97220 0.82726 0.89265 1.46007 1.67278 1.14051 1.09512 1.20008 0.78050 0.87320 0.84157 1.90817 1.48613 1.15349 1.84585 1.24080 1.00388 1.01103 0.93700 0.84248 1.22810 0.92029 1.04897 0.95892 1.24111 0.95851 1.01786 0.98574 1.21735 0.87618 0.79655 0.86733 1.93021 1.63504 1.94619 1.65907 1.93119 1.95039 1.33091 1.92559 1.23398 0.96371 1.01072 0.94000 1.23781 0.94376 0.97396 0.94013 1.68436 1.02246 1.33500 1.13322 1.22458 0.98628 0.94426 0.96671 1.19681 0.86524 0.83651 0.87236 1.90518 1.29085 1.56575 1.70168 1.41885 1.28175 1.34086 1.16006 1.19745 1.12981 1.18614 0.91414 0.87873 1.25271 0.95875 0.96660 1.00219 1.69621 1.18983 1.26964 1.38750 0.85799 0.78718 0.78309 0.81518 1.19217 1.20743 1.20751 1.23971 0.95565 1.01995 0.90903 0.92356 0.90980 0.92224 0.76522 0.88130 0.88114 0.86644 0.88153 0.87802 0.91378 0.88478 0.89203 0.92851 0.77506 0.91918 0.89538 0.91475 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.57 9.46 37.16 0.35 -1.22 16 2 C 0.15 1.48 2.29 -67.93 -0.16 1.32 16 3 H 0.09 1.11 7.49 -51.93 -0.39 0.72 16 4 N -0.72 -5.56 4.95 -53.81 -0.27 -5.83 16 5 C 0.52 5.11 7.26 -10.98 -0.08 5.03 16 6 O -0.52 -7.62 14.44 5.56 0.08 -7.54 16 7 C -0.17 -1.09 4.03 -90.96 -0.37 -1.45 16 8 H 0.14 0.50 8.14 -51.93 -0.42 0.08 16 9 C -0.12 -0.50 7.62 -25.83 -0.20 -0.69 16 10 C -0.17 -0.74 7.87 -25.82 -0.20 -0.94 16 11 C 0.28 2.42 3.01 -25.92 -0.08 2.34 16 12 F -0.19 -1.89 17.41 2.25 0.04 -1.85 16 13 F -0.16 -1.96 15.23 2.25 0.03 -1.93 16 14 C -0.13 -1.33 3.35 -89.69 -0.30 -1.63 16 15 C 0.03 0.50 6.15 -2.64 -0.02 0.48 16 16 N -0.45 -7.26 5.95 -239.52 -1.42 -8.68 16 17 C 0.01 0.18 5.31 -4.98 -0.03 0.16 16 18 C 0.44 10.55 7.59 -10.98 -0.08 10.47 16 19 O -0.58 -15.70 15.13 5.54 0.08 -15.62 16 20 N -0.56 -14.46 5.29 -10.96 -0.06 -14.52 16 21 C -0.30 -8.37 9.68 -14.93 -0.14 -8.51 16 22 H 0.10 3.04 7.16 -52.49 -0.38 2.67 16 23 C 0.02 0.57 5.50 -17.47 -0.10 0.48 16 24 N -0.90 -24.73 13.05 55.50 0.72 -24.00 16 25 Si 0.93 21.19 29.55 -169.99 -5.02 16.16 16 26 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 27 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 28 H -0.28 -6.32 7.11 56.52 0.40 -5.91 16 29 C 0.00 0.05 7.41 -2.76 -0.02 0.03 16 30 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.07 0.71 7.99 -51.93 -0.42 0.30 16 32 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 33 H 0.40 1.91 8.60 -40.82 -0.35 1.56 16 34 H 0.10 0.55 8.09 -51.93 -0.42 0.13 16 35 H 0.10 0.17 8.14 -51.93 -0.42 -0.26 16 36 H 0.12 0.28 8.14 -51.93 -0.42 -0.15 16 37 H 0.10 0.41 8.14 -51.93 -0.42 -0.01 16 38 H 0.10 0.97 8.14 -51.93 -0.42 0.55 16 39 H 0.07 1.04 7.69 -51.93 -0.40 0.64 16 40 H 0.10 1.59 8.10 -51.93 -0.42 1.17 16 41 H 0.09 1.48 8.14 -51.93 -0.42 1.05 16 42 H 0.05 0.87 7.70 -51.93 -0.40 0.47 16 43 H 0.39 9.61 7.90 -40.82 -0.32 9.29 16 44 H 0.27 7.01 8.31 -40.82 -0.34 6.67 16 45 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 46 H 0.07 0.75 7.75 -51.93 -0.40 0.34 16 LS Contribution 388.89 15.07 5.86 5.86 Total: -1.00 -35.49 388.89 -8.20 -43.69 By element: Atomic # 1 Polarization: 15.22 SS G_CDS: -6.84 Total: 8.39 kcal Atomic # 6 Polarization: 7.27 SS G_CDS: -1.42 Total: 5.86 kcal Atomic # 7 Polarization: -52.00 SS G_CDS: -1.02 Total: -53.03 kcal Atomic # 8 Polarization: -23.32 SS G_CDS: 0.16 Total: -23.15 kcal Atomic # 9 Polarization: -3.85 SS G_CDS: 0.07 Total: -3.78 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.16 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -35.49 -8.20 -43.69 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717553640.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.262 kcal (2) G-P(sol) polarization free energy of solvation -35.492 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.754 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.200 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.692 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.954 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds