Wall clock time and date at job start Wed Apr 1 2020 03:18:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08997 * 109.46917 * 2 1 4 4 N 1.46499 * 109.47533 * 239.99529 * 2 1 3 5 5 C 1.34779 * 119.99849 * 84.99957 * 4 2 1 6 6 O 1.21278 * 119.99956 * 0.02562 * 5 4 2 7 7 C 1.50704 * 119.99774 * 180.02562 * 5 4 2 8 8 H 1.08992 * 112.85130 * 50.32568 * 7 5 4 9 9 C 1.53785 * 113.60858 * 279.13312 * 7 5 4 10 10 C 1.53954 * 87.01929 * 220.04909 * 9 7 5 11 11 C 1.53778 * 113.61136 * 181.52876 * 7 5 4 12 12 F 1.39898 * 113.61494 * 254.52414 * 11 7 5 13 13 F 1.39902 * 113.61596 * 25.42916 * 11 7 5 14 14 C 1.53001 * 109.46920 * 119.99357 * 2 1 3 15 15 C 1.53930 * 113.73664 * 282.06055 * 14 2 1 16 16 N 1.48187 * 86.10460 * 221.95715 * 15 14 2 17 17 C 1.46897 * 111.07473 * 137.51709 * 16 15 14 18 18 C 1.50704 * 109.47008 * 70.56530 * 17 16 15 19 19 O 1.21296 * 119.99622 * 0.02562 * 18 17 16 20 20 N 1.34777 * 120.00002 * 180.02562 * 18 17 16 21 21 C 1.37098 * 119.99674 * 180.02562 * 20 18 17 22 22 H 1.07999 * 120.00253 * 0.02562 * 21 20 18 23 23 C 1.38954 * 119.99709 * 179.97438 * 21 20 18 24 24 N 1.31407 * 119.99918 * 0.02562 * 23 21 20 25 25 Si 1.86798 * 119.99780 * 179.97438 * 23 21 20 26 26 H 1.48497 * 109.47329 * 0.02562 * 25 23 21 27 27 H 1.48505 * 109.46977 * 120.00599 * 25 23 21 28 28 H 1.48496 * 109.47333 * 240.00113 * 25 23 21 29 29 C 1.47963 * 90.79594 * 24.59820 * 16 15 14 30 30 H 1.09004 * 109.47177 * 175.99332 * 1 2 3 31 31 H 1.08999 * 109.47431 * 295.99555 * 1 2 3 32 32 H 1.09005 * 109.46914 * 55.99617 * 1 2 3 33 33 H 0.96998 * 119.99861 * 264.99945 * 4 2 1 34 34 H 1.09004 * 113.61629 * 334.56963 * 9 7 5 35 35 H 1.08997 * 113.61379 * 105.47201 * 9 7 5 36 36 H 1.08998 * 113.54057 * 270.81807 * 10 9 7 37 37 H 1.08996 * 113.74257 * 139.94397 * 10 9 7 38 38 H 1.08999 * 112.93861 * 53.62696 * 14 2 1 39 39 H 1.09004 * 113.75739 * 336.23962 * 15 14 2 40 40 H 1.09001 * 113.76225 * 107.60077 * 15 14 2 41 41 H 1.08994 * 109.47624 * 190.57158 * 17 16 15 42 42 H 1.09004 * 109.47382 * 310.56781 * 17 16 15 43 43 H 0.97001 * 120.00065 * 359.97438 * 20 18 17 44 44 H 0.97006 * 120.00006 * 179.97438 * 24 23 21 45 45 H 1.08997 * 113.76028 * 221.08498 * 29 16 15 46 46 H 1.08998 * 113.86218 * 89.73354 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0184 -0.6907 -1.1961 5 6 2.1472 -0.0184 -2.3571 6 8 1.8591 1.1584 -2.4115 7 6 2.6491 -0.7290 -3.5876 8 1 2.1164 -1.6590 -3.7862 9 6 4.1794 -0.8736 -3.6342 10 6 4.0831 -0.5571 -5.1378 11 6 2.7741 0.1843 -4.8185 12 9 1.7691 -0.0176 -5.7705 13 9 2.9580 1.5338 -4.4986 14 6 2.0399 -0.7211 1.2493 15 6 1.9689 0.1312 2.5291 16 7 3.3075 -0.4184 2.8484 17 6 4.1969 0.6274 3.3712 18 6 3.7439 1.0282 4.7515 19 8 2.7756 0.4948 5.2507 20 7 4.4145 1.9794 5.4312 21 6 4.0027 2.3436 6.6871 22 1 3.1411 1.8681 7.1320 23 6 4.6945 3.3239 7.3880 24 7 5.7431 3.9021 6.8469 25 14 4.1329 3.8207 9.0989 26 1 2.9366 3.0265 9.4774 27 1 5.2249 3.5645 10.0722 28 1 3.7912 5.2658 9.1076 29 6 3.5696 -0.6689 1.4139 30 1 -0.3634 -1.0252 -0.0718 31 1 -0.3634 0.4504 0.9237 32 1 -0.3633 0.5748 -0.8520 33 1 2.2491 -1.6318 -1.1524 34 1 4.7076 -0.1120 -3.0606 35 1 4.5292 -1.8837 -3.4213 36 1 3.9436 -1.4407 -5.7606 37 1 4.8771 0.0955 -5.5006 38 1 1.6203 -1.7205 1.3640 39 1 1.9682 1.2051 2.3421 40 1 1.1878 -0.1814 3.2222 41 1 5.2168 0.2461 3.4200 42 1 4.1646 1.4949 2.7120 43 1 5.1891 2.4057 5.0321 44 1 6.2259 4.5867 7.3361 45 1 4.0651 -1.6196 1.2175 46 1 4.0383 0.1693 0.8983 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001717553640.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:18:30 Heat of formation + Delta-G solvation = -140.964707 kcal Electronic energy + Delta-G solvation = -30370.369929 eV Core-core repulsion = 25738.492409 eV Total energy + Delta-G solvation = -4631.877520 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.165 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -49.76727 -48.12715 -41.65023 -40.78716 -39.58135 -38.09855 -36.39793 -35.90167 -33.34850 -32.60136 -30.74548 -28.18875 -27.43423 -26.94432 -25.95813 -25.63290 -23.27623 -21.86060 -21.20240 -20.98269 -20.56382 -19.91439 -19.01335 -18.34475 -17.89833 -17.64560 -17.14762 -16.92916 -16.73268 -16.53385 -16.25296 -15.83415 -15.68225 -15.56054 -15.17247 -14.93228 -14.89659 -14.59921 -14.38015 -14.29145 -13.97809 -13.83396 -13.64776 -13.52925 -13.41047 -13.09249 -12.93572 -12.79849 -12.60397 -12.43956 -12.42026 -12.14505 -12.13715 -11.93339 -11.81823 -11.68531 -11.60052 -11.50948 -10.75760 -10.35705 -10.18326 -10.04000 -9.67025 -8.49101 -5.97987 1.34662 1.39825 1.49913 1.54252 1.97043 2.01996 2.26911 2.50928 2.77928 2.80358 3.17104 3.24930 3.31671 3.35053 3.43052 3.49685 3.67789 3.90329 4.10772 4.15974 4.22452 4.33491 4.36978 4.40920 4.48398 4.49959 4.51106 4.52619 4.54475 4.74264 4.77428 4.79004 4.86505 4.92801 4.96515 5.17294 5.19187 5.29924 5.37903 5.41271 5.48316 5.88308 6.06100 6.52501 6.57215 7.10115 7.22786 7.52999 8.08428 8.68673 Molecular weight = 345.17amu Principal moments of inertia in cm(-1) A = 0.020469 B = 0.001944 C = 0.001889 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1367.600353 B =14403.137739 C =14819.148174 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.157 3.843 3 H 0.060 0.940 4 N -0.699 5.699 5 C 0.515 3.485 6 O -0.576 6.576 7 C -0.161 4.161 8 H 0.176 0.824 9 C -0.107 4.107 10 C -0.148 4.148 11 C 0.243 3.757 12 F -0.204 7.204 13 F -0.190 7.190 14 C -0.098 4.098 15 C 0.022 3.978 16 N -0.477 5.477 17 C 0.023 3.977 18 C 0.440 3.560 19 O -0.617 6.617 20 N -0.576 5.576 21 C -0.332 4.332 22 H 0.079 0.921 23 C -0.015 4.015 24 N -0.921 5.921 25 Si 0.994 3.006 26 H -0.273 1.273 27 H -0.269 1.269 28 H -0.271 1.271 29 C 0.015 3.985 30 H 0.079 0.921 31 H 0.064 0.936 32 H 0.042 0.958 33 H 0.421 0.579 34 H 0.084 0.916 35 H 0.140 0.860 36 H 0.145 0.855 37 H 0.102 0.898 38 H 0.126 0.874 39 H 0.054 0.946 40 H 0.073 0.927 41 H 0.110 0.890 42 H 0.068 0.932 43 H 0.395 0.605 44 H 0.278 0.722 45 H 0.117 0.883 46 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.308 -14.922 -26.333 30.296 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.052 3.948 3 H 0.078 0.922 4 N -0.351 5.351 5 C 0.301 3.699 6 O -0.455 6.455 7 C -0.182 4.182 8 H 0.193 0.807 9 C -0.144 4.144 10 C -0.186 4.186 11 C 0.206 3.794 12 F -0.185 7.185 13 F -0.170 7.170 14 C -0.118 4.118 15 C -0.108 4.108 16 N -0.200 5.200 17 C -0.109 4.109 18 C 0.228 3.772 19 O -0.503 6.503 20 N -0.213 5.213 21 C -0.461 4.461 22 H 0.097 0.903 23 C -0.214 4.214 24 N -0.562 5.562 25 Si 0.817 3.183 26 H -0.198 1.198 27 H -0.195 1.195 28 H -0.196 1.196 29 C -0.113 4.113 30 H 0.098 0.902 31 H 0.083 0.917 32 H 0.061 0.939 33 H 0.259 0.741 34 H 0.103 0.897 35 H 0.158 0.842 36 H 0.163 0.837 37 H 0.120 0.880 38 H 0.144 0.856 39 H 0.072 0.928 40 H 0.092 0.908 41 H 0.128 0.872 42 H 0.086 0.914 43 H 0.229 0.771 44 H 0.087 0.913 45 H 0.135 0.865 46 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -1.963 -14.778 -25.476 29.517 hybrid contribution -0.069 1.769 0.406 1.816 sum -2.032 -13.010 -25.070 28.317 Atomic orbital electron populations 1.22094 0.94605 1.03157 1.01797 1.20812 0.94499 0.96005 0.83486 0.92173 1.45790 1.66294 1.14796 1.08239 1.20676 0.77033 0.86789 0.85367 1.90804 1.51132 1.18046 1.85508 1.24243 1.02391 1.01129 0.90476 0.80695 1.22852 0.89773 1.06607 0.95202 1.24165 0.93021 1.01950 0.99422 1.22697 0.89684 0.78815 0.88176 1.92984 1.64416 1.94534 1.66519 1.93046 1.95290 1.35766 1.92932 1.23185 0.96044 1.00880 0.91649 1.23743 0.93556 0.97398 0.96083 1.68444 1.02294 1.32675 1.16582 1.22341 0.99763 0.95829 0.92937 1.20751 0.85364 0.82117 0.89004 1.90484 1.30612 1.57516 1.71690 1.41974 1.28667 1.34918 1.15747 1.19691 1.13321 1.20063 0.93074 0.90329 1.26068 0.95698 0.95989 1.03682 1.69680 1.19378 1.27077 1.40090 0.84860 0.78268 0.78120 0.77022 1.19758 1.19463 1.19628 1.24073 0.96198 1.03538 0.87533 0.90186 0.91698 0.93885 0.74139 0.89740 0.84175 0.83742 0.87990 0.85571 0.92767 0.90837 0.87212 0.91366 0.77097 0.91286 0.86484 0.91093 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.98 9.46 71.98 0.68 -2.30 16 2 C 0.16 2.94 2.29 44.99 0.10 3.05 16 3 H 0.06 1.53 7.49 -2.39 -0.02 1.51 16 4 N -0.70 -9.13 4.95 -442.54 -2.19 -11.32 16 5 C 0.51 9.48 7.26 87.66 0.64 10.12 16 6 O -0.58 -17.46 14.44 -3.02 -0.04 -17.50 16 7 C -0.16 -1.62 4.03 -11.01 -0.04 -1.66 16 8 H 0.18 0.47 8.14 -2.39 -0.02 0.45 16 9 C -0.11 -0.50 7.62 31.18 0.24 -0.27 16 10 C -0.15 -0.89 7.87 31.18 0.25 -0.65 16 11 C 0.24 3.98 3.01 31.12 0.09 4.07 16 12 F -0.20 -3.95 17.41 44.97 0.78 -3.17 16 13 F -0.19 -4.93 15.23 44.97 0.68 -4.25 16 14 C -0.10 -1.83 3.35 -10.15 -0.03 -1.87 16 15 C 0.02 0.65 6.15 86.36 0.53 1.18 16 16 N -0.48 -14.73 5.95 -911.70 -5.42 -20.15 16 17 C 0.02 0.81 5.31 85.56 0.45 1.26 16 18 C 0.44 21.39 7.59 87.66 0.67 22.06 16 19 O -0.62 -34.57 15.13 -3.08 -0.05 -34.61 16 20 N -0.58 -30.23 5.29 -306.97 -1.62 -31.85 16 21 C -0.33 -19.18 9.68 84.04 0.81 -18.37 16 22 H 0.08 4.84 7.16 -2.91 -0.02 4.82 16 23 C -0.01 -0.80 5.50 84.93 0.47 -0.34 16 24 N -0.92 -50.49 13.05 21.66 0.28 -50.21 16 25 Si 0.99 43.56 29.55 68.60 2.03 45.59 16 26 H -0.27 -12.08 7.11 99.48 0.71 -11.38 16 27 H -0.27 -11.26 7.11 99.48 0.71 -10.55 16 28 H -0.27 -11.38 7.11 99.48 0.71 -10.67 16 29 C 0.01 0.29 7.41 86.41 0.64 0.93 16 30 H 0.08 1.15 8.14 -2.38 -0.02 1.13 16 31 H 0.06 1.30 7.99 -2.39 -0.02 1.28 16 32 H 0.04 0.96 8.14 -2.38 -0.02 0.94 16 33 H 0.42 2.19 8.60 -92.71 -0.80 1.39 16 34 H 0.08 0.72 8.09 -2.38 -0.02 0.70 16 35 H 0.14 -0.38 8.14 -2.39 -0.02 -0.40 16 36 H 0.14 0.05 8.14 -2.39 -0.02 0.03 16 37 H 0.10 0.61 8.14 -2.39 -0.02 0.59 16 38 H 0.13 1.89 8.14 -2.39 -0.02 1.87 16 39 H 0.05 1.74 7.69 -2.38 -0.02 1.72 16 40 H 0.07 2.50 8.10 -2.39 -0.02 2.48 16 41 H 0.11 3.41 8.14 -2.39 -0.02 3.39 16 42 H 0.07 2.19 7.70 -2.38 -0.02 2.17 16 43 H 0.40 19.77 7.90 -92.71 -0.73 19.04 16 44 H 0.28 14.19 8.31 -92.70 -0.77 13.41 16 45 H 0.12 1.65 8.14 -2.39 -0.02 1.63 16 46 H 0.07 1.39 7.75 -2.39 -0.02 1.37 16 Total: -1.00 -82.74 388.89 -0.56 -83.30 By element: Atomic # 1 Polarization: 27.46 SS G_CDS: -0.51 Total: 26.96 kcal Atomic # 6 Polarization: 11.73 SS G_CDS: 5.49 Total: 17.22 kcal Atomic # 7 Polarization: -104.58 SS G_CDS: -8.95 Total: -113.53 kcal Atomic # 8 Polarization: -52.02 SS G_CDS: -0.09 Total: -52.11 kcal Atomic # 9 Polarization: -8.89 SS G_CDS: 1.47 Total: -7.42 kcal Atomic # 14 Polarization: 43.56 SS G_CDS: 2.03 Total: 45.59 kcal Total: -82.74 -0.56 -83.30 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717553640.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.665 kcal (2) G-P(sol) polarization free energy of solvation -82.739 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.405 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.560 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.299 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.965 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds