Wall clock time and date at job start Wed Apr 1 2020 02:59:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46892 * 111.00044 * 2 1 4 4 C 1.50698 * 109.47302 * 293.95702 * 3 2 1 5 5 O 1.21290 * 120.00288 * 0.02562 * 4 3 2 6 6 N 1.34778 * 120.00162 * 179.97438 * 4 3 2 7 7 C 1.37094 * 120.00602 * 180.02562 * 6 4 3 8 8 H 1.08006 * 119.99311 * 359.97438 * 7 6 4 9 9 C 1.38948 * 120.00316 * 179.97438 * 7 6 4 10 10 N 1.31405 * 120.00237 * 0.02562 * 9 7 6 11 11 Si 1.86802 * 119.99891 * 179.97438 * 9 7 6 12 12 H 1.48505 * 109.47014 * 60.00290 * 11 9 7 13 13 H 1.48494 * 109.47393 * 180.02562 * 11 9 7 14 14 H 1.48500 * 109.47278 * 300.00357 * 11 9 7 15 15 C 1.46896 * 111.00130 * 123.96045 * 2 1 3 16 16 H 1.09003 * 110.88316 * 297.23361 * 15 2 1 17 17 C 1.55161 * 111.00626 * 61.11438 * 15 2 1 18 18 C 1.54320 * 102.93971 * 153.57876 * 17 15 2 19 19 N 1.47019 * 107.27300 * 337.80406 * 18 17 15 20 20 C 1.34785 * 125.64896 * 178.90569 * 19 18 17 21 21 O 1.21280 * 119.99720 * 180.02562 * 20 19 18 22 22 C 1.50701 * 119.99897 * 0.02566 * 20 19 18 23 23 H 1.09001 * 112.84811 * 309.66958 * 22 20 19 24 24 C 1.53778 * 113.61519 * 178.47019 * 22 20 19 25 25 C 1.53775 * 87.08133 * 219.93729 * 24 22 20 26 26 C 1.53783 * 87.08618 * 25.43067 * 25 24 22 27 27 F 1.39889 * 113.61846 * 220.02093 * 26 25 24 28 28 F 1.39902 * 113.61186 * 89.11338 * 26 25 24 29 29 C 1.47423 * 108.70403 * 359.17430 * 19 18 17 30 30 H 1.09004 * 109.46979 * 301.63228 * 1 2 3 31 31 H 1.09001 * 109.47654 * 61.62993 * 1 2 3 32 32 H 1.09001 * 109.47133 * 181.63460 * 1 2 3 33 33 H 1.08999 * 109.46999 * 53.95699 * 3 2 1 34 34 H 1.09000 * 109.47356 * 173.95484 * 3 2 1 35 35 H 0.97002 * 119.99872 * 359.97438 * 6 4 3 36 36 H 0.96993 * 120.00235 * 180.02562 * 10 9 7 37 37 H 1.08995 * 110.72109 * 35.21012 * 17 15 2 38 38 H 1.08998 * 110.71586 * 271.93712 * 17 15 2 39 39 H 1.09006 * 109.88046 * 218.39052 * 18 17 15 40 40 H 1.08999 * 110.01348 * 97.29852 * 18 17 15 41 41 H 1.09006 * 113.61001 * 334.48438 * 24 22 20 42 42 H 1.08995 * 113.61727 * 105.38743 * 24 22 20 43 43 H 1.09002 * 113.61716 * 139.98153 * 25 24 22 44 44 H 1.09007 * 113.61585 * 270.79693 * 25 24 22 45 45 H 1.08995 * 110.36761 * 142.74128 * 29 19 18 46 46 H 1.09003 * 110.36327 * 265.06251 * 29 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6369 2.0471 -1.2984 5 8 1.0046 1.4457 -2.1407 6 7 2.0180 3.3202 -1.5232 7 6 1.6914 3.9352 -2.7041 8 1 1.1290 3.3993 -3.4545 9 6 2.0838 5.2479 -2.9357 10 7 2.7685 5.8997 -2.0229 11 14 1.6394 6.0855 -4.5451 12 1 0.1621 6.1213 -4.6930 13 1 2.1710 7.4720 -4.5449 14 1 2.2320 5.3289 -5.6771 15 6 1.9955 -0.7661 1.1375 16 1 1.6996 -0.3110 2.0827 17 6 1.5416 -2.2482 1.0676 18 6 2.6559 -2.9875 1.8378 19 7 3.8481 -2.1275 1.8131 20 6 5.0308 -2.4074 2.3957 21 8 5.9499 -1.6206 2.3108 22 6 5.2112 -3.6981 3.1525 23 1 4.4191 -3.8766 3.8797 24 6 6.6264 -3.8840 3.7249 25 6 6.5121 -5.3622 3.3170 26 6 5.5026 -4.9083 2.2494 27 9 4.4135 -5.7741 2.1039 28 9 6.0939 -4.5669 1.0283 29 6 3.5337 -0.9053 1.0511 30 1 -0.3633 0.5390 0.8750 31 1 -0.3634 0.4883 -0.9042 32 1 -0.3633 -1.0272 0.0293 33 1 1.5611 1.9272 0.8309 34 1 3.0797 1.3444 0.1082 35 1 2.5227 3.8016 -0.8491 36 1 3.0421 6.8161 -2.1844 37 1 1.4959 -2.5892 0.0334 38 1 0.5788 -2.3802 1.5613 39 1 2.8746 -3.9382 1.3515 40 1 2.3453 -3.1611 2.8681 41 1 7.3942 -3.3379 3.1768 42 1 6.6850 -3.7316 4.8026 43 1 7.4323 -5.7729 2.9013 44 1 6.0770 -5.9961 4.0898 45 1 4.0193 -0.0407 1.5034 46 1 3.8444 -1.0156 0.0121 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001190849021.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:59:30 Heat of formation + Delta-G solvation = -126.990987 kcal Electronic energy + Delta-G solvation = -30948.258124 eV Core-core repulsion = 26316.986550 eV Total energy + Delta-G solvation = -4631.271574 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.165 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -49.25866 -47.57725 -40.57260 -39.06044 -38.02500 -37.06119 -35.50967 -33.82002 -31.31410 -31.09653 -29.49002 -27.86651 -27.40274 -25.46494 -24.92218 -23.96933 -22.98352 -21.04338 -20.29029 -19.67218 -19.09304 -18.33608 -17.83817 -17.70036 -17.04783 -16.75377 -16.53543 -15.87741 -15.49095 -15.01948 -14.66813 -14.60829 -14.53603 -14.28139 -14.05871 -13.86636 -13.82829 -13.75047 -13.67005 -13.37590 -13.02750 -12.89241 -12.63696 -12.19160 -12.13996 -11.94588 -11.81058 -11.67628 -11.51354 -11.39935 -11.27752 -11.25468 -11.06811 -10.96253 -10.77852 -10.42729 -10.19879 -10.06181 -9.45700 -8.87637 -8.48951 -7.98641 -7.88769 -6.39943 -3.80872 2.10726 2.57429 3.01975 3.21317 3.27131 3.28056 3.31311 3.72392 3.80219 3.87367 3.90320 3.94349 4.18529 4.23757 4.45492 4.55811 4.70458 4.83437 4.93713 4.98458 5.04029 5.09037 5.12822 5.16280 5.27392 5.29813 5.32782 5.56893 5.62890 5.65501 5.69915 5.75130 5.86362 5.87586 5.89512 6.03281 6.06312 6.28498 6.52689 7.15698 7.23100 7.33086 7.56596 7.83178 8.07408 8.63143 9.19468 9.55764 10.07432 10.77735 Molecular weight = 345.17amu Principal moments of inertia in cm(-1) A = 0.019720 B = 0.002191 C = 0.002081 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1419.502785 B =12775.079489 C =13452.950587 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 N -0.506 5.506 3 C 0.042 3.958 4 C 0.445 3.555 5 O -0.578 6.578 6 N -0.563 5.563 7 C -0.299 4.299 8 H 0.103 0.897 9 C 0.022 3.978 10 N -0.902 5.902 11 Si 0.931 3.069 12 H -0.274 1.274 13 H -0.285 1.285 14 H -0.273 1.273 15 C 0.069 3.931 16 H 0.055 0.945 17 C -0.122 4.122 18 C 0.099 3.901 19 N -0.612 5.612 20 C 0.538 3.462 21 O -0.524 6.524 22 C -0.163 4.163 23 H 0.140 0.860 24 C -0.113 4.113 25 C -0.164 4.164 26 C 0.271 3.729 27 F -0.186 7.186 28 F -0.169 7.169 29 C 0.112 3.888 30 H 0.015 0.985 31 H 0.099 0.901 32 H 0.061 0.939 33 H 0.049 0.951 34 H 0.089 0.911 35 H 0.392 0.608 36 H 0.272 0.728 37 H 0.093 0.907 38 H 0.083 0.917 39 H 0.072 0.928 40 H 0.069 0.931 41 H 0.109 0.891 42 H 0.097 0.903 43 H 0.100 0.900 44 H 0.116 0.884 45 H 0.080 0.920 46 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.568 -22.048 16.643 27.854 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 N -0.231 5.231 3 C -0.089 4.089 4 C 0.230 3.770 5 O -0.462 6.462 6 N -0.200 5.200 7 C -0.429 4.429 8 H 0.120 0.880 9 C -0.179 4.179 10 N -0.543 5.543 11 Si 0.758 3.242 12 H -0.199 1.199 13 H -0.210 1.210 14 H -0.199 1.199 15 C -0.041 4.041 16 H 0.073 0.927 17 C -0.160 4.160 18 C -0.025 4.025 19 N -0.346 5.346 20 C 0.325 3.675 21 O -0.399 6.399 22 C -0.185 4.185 23 H 0.158 0.842 24 C -0.150 4.150 25 C -0.202 4.202 26 C 0.234 3.766 27 F -0.166 7.166 28 F -0.150 7.150 29 C -0.011 4.011 30 H 0.034 0.966 31 H 0.118 0.882 32 H 0.080 0.920 33 H 0.067 0.933 34 H 0.107 0.893 35 H 0.225 0.775 36 H 0.082 0.918 37 H 0.111 0.889 38 H 0.101 0.899 39 H 0.091 0.909 40 H 0.088 0.912 41 H 0.128 0.872 42 H 0.115 0.885 43 H 0.119 0.881 44 H 0.134 0.866 45 H 0.099 0.901 46 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 3.929 -22.075 15.574 27.300 hybrid contribution -0.366 1.120 0.234 1.202 sum 3.562 -20.955 15.808 26.489 Atomic orbital electron populations 1.22554 0.86100 1.01394 1.02407 1.61609 1.08944 1.12928 1.39597 1.21939 1.00835 0.88719 0.97429 1.19659 0.85545 0.82945 0.88850 1.90477 1.43981 1.64645 1.47103 1.41859 1.49365 1.10718 1.18051 1.19640 1.33040 0.95402 0.94772 0.87950 1.25262 0.96796 0.96670 0.99213 1.69600 1.37933 1.12279 1.34479 0.85919 0.78860 0.77924 0.81518 1.19933 1.20999 1.19876 1.22732 0.93841 0.94340 0.93156 0.92701 1.22694 0.97244 0.93863 1.02157 1.22152 0.85106 0.94461 1.00761 1.48389 1.11636 1.21394 1.53191 1.19562 0.81306 0.87433 0.79184 1.90742 1.39547 1.49369 1.60260 1.24084 1.03079 0.92551 0.98809 0.84235 1.22775 0.94454 0.94467 1.03349 1.24071 0.99769 0.99195 0.97132 1.21960 0.83821 0.88952 0.81859 1.93032 1.56034 1.71095 1.96486 1.93089 1.83416 1.92303 1.46162 1.22272 0.94624 0.86883 0.97277 0.96604 0.88239 0.92012 0.93299 0.89319 0.77482 0.91808 0.88867 0.89867 0.90922 0.91241 0.87225 0.88458 0.88112 0.86602 0.90128 0.89640 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.35 9.05 60.07 0.54 0.90 16 2 N -0.51 -8.10 4.40 -233.89 -1.03 -9.13 16 3 C 0.04 0.75 5.33 -4.98 -0.03 0.72 16 4 C 0.44 10.45 7.52 -10.99 -0.08 10.37 16 5 O -0.58 -15.35 13.88 5.55 0.08 -15.28 16 6 N -0.56 -14.35 5.29 -10.96 -0.06 -14.41 16 7 C -0.30 -8.36 9.68 -14.94 -0.14 -8.50 16 8 H 0.10 2.98 7.16 -52.48 -0.38 2.61 16 9 C 0.02 0.60 5.50 -17.47 -0.10 0.50 16 10 N -0.90 -24.76 13.05 55.50 0.72 -24.04 16 11 Si 0.93 21.21 29.55 -169.99 -5.02 16.19 16 12 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 13 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 14 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 15 C 0.07 0.86 2.70 -65.68 -0.18 0.68 16 16 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 17 C -0.12 -1.19 5.30 -24.90 -0.13 -1.32 16 18 C 0.10 0.88 6.47 -3.07 -0.02 0.86 16 19 N -0.61 -7.24 3.33 -170.66 -0.57 -7.81 16 20 C 0.54 6.66 6.83 -10.98 -0.07 6.58 16 21 O -0.52 -8.39 16.17 5.56 0.09 -8.31 16 22 C -0.16 -1.32 3.23 -90.96 -0.29 -1.61 16 23 H 0.14 0.74 8.12 -51.93 -0.42 0.32 16 24 C -0.11 -0.73 7.37 -25.92 -0.19 -0.92 16 25 C -0.16 -0.85 7.87 -25.92 -0.20 -1.05 16 26 C 0.27 2.33 3.10 -25.92 -0.08 2.25 16 27 F -0.19 -1.65 16.75 2.25 0.04 -1.61 16 28 F -0.17 -2.02 16.70 2.25 0.04 -1.98 16 29 C 0.11 1.50 5.36 -2.65 -0.01 1.49 16 30 H 0.02 0.22 8.13 -51.93 -0.42 -0.20 16 31 H 0.10 1.89 5.91 -51.93 -0.31 1.58 16 32 H 0.06 0.78 6.90 -51.93 -0.36 0.42 16 33 H 0.05 0.80 8.11 -51.93 -0.42 0.38 16 34 H 0.09 1.48 6.73 -51.93 -0.35 1.13 16 35 H 0.39 9.61 7.90 -40.82 -0.32 9.29 16 36 H 0.27 7.09 8.31 -40.82 -0.34 6.75 16 37 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 38 H 0.08 0.65 7.97 -51.93 -0.41 0.24 16 39 H 0.07 0.64 7.48 -51.93 -0.39 0.25 16 40 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 41 H 0.11 0.93 7.45 -51.93 -0.39 0.55 16 42 H 0.10 0.42 8.14 -51.93 -0.42 0.00 16 43 H 0.10 0.46 8.14 -51.93 -0.42 0.04 16 44 H 0.12 0.34 8.14 -51.92 -0.42 -0.09 16 45 H 0.08 1.14 7.69 -51.93 -0.40 0.74 16 46 H 0.09 1.31 8.14 -51.93 -0.42 0.89 16 LS Contribution 380.61 15.07 5.74 5.74 Total: -1.00 -33.82 380.61 -7.63 -41.45 By element: Atomic # 1 Polarization: 14.90 SS G_CDS: -6.66 Total: 8.24 kcal Atomic # 6 Polarization: 11.94 SS G_CDS: -0.99 Total: 10.94 kcal Atomic # 7 Polarization: -54.45 SS G_CDS: -0.93 Total: -55.38 kcal Atomic # 8 Polarization: -23.75 SS G_CDS: 0.17 Total: -23.58 kcal Atomic # 9 Polarization: -3.67 SS G_CDS: 0.08 Total: -3.59 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.02 Total: 16.19 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -33.82 -7.63 -41.45 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001190849021.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.538 kcal (2) G-P(sol) polarization free energy of solvation -33.821 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.360 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.631 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.453 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.991 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds