Wall clock time and date at job start Wed Apr 1 2020 03:26:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30824 * 1 3 3 Si 1.86794 * 120.00178 * 2 1 4 4 H 1.48493 * 109.47302 * 275.40131 * 3 2 1 5 5 H 1.48504 * 109.46964 * 35.40710 * 3 2 1 6 6 H 1.48503 * 109.47013 * 155.40063 * 3 2 1 7 7 C 1.39953 * 119.99716 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99957 * 342.01479 * 7 2 1 9 9 C 1.41392 * 119.99725 * 162.01583 * 7 2 1 10 10 C 1.40729 * 120.24798 * 329.98960 * 9 7 2 11 11 C 1.37593 * 119.74581 * 180.31971 * 10 9 7 12 12 C 1.38657 * 120.25228 * 359.66584 * 11 10 9 13 13 C 1.38618 * 120.49801 * 0.02562 * 12 11 10 14 14 C 1.37647 * 120.24628 * 0.02562 * 13 12 11 15 15 C 1.50696 * 120.12515 * 179.97438 * 14 13 12 16 16 C 1.50689 * 109.47378 * 265.00391 * 15 14 13 17 17 O 1.21283 * 120.00404 * 359.97438 * 16 15 14 18 18 N 1.34786 * 120.00174 * 180.02562 * 16 15 14 19 19 C 1.46499 * 120.00069 * 179.97438 * 18 16 15 20 20 C 1.52998 * 109.47005 * 179.97438 * 19 18 16 21 21 C 1.52999 * 109.47041 * 180.02562 * 20 19 18 22 22 N 1.46907 * 109.47111 * 180.02562 * 21 20 19 23 23 C 1.47189 * 110.99892 * 56.84288 * 22 21 20 24 24 C 1.52996 * 108.71721 * 167.62652 * 23 22 21 25 25 N 1.46015 * 110.04180 * 50.29757 * 24 23 22 26 26 C 1.33711 * 122.92541 * 341.84929 * 25 24 23 27 27 O 1.21283 * 118.62470 * 181.68007 * 26 25 24 28 28 C 1.46901 * 110.99634 * 293.95363 * 22 21 20 29 29 H 0.97005 * 119.99653 * 359.97438 * 1 2 3 30 30 H 1.08006 * 120.12891 * 0.02562 * 10 9 7 31 31 H 1.08009 * 119.87508 * 179.68784 * 11 10 9 32 32 H 1.07997 * 119.75434 * 180.02562 * 12 11 10 33 33 H 1.07994 * 119.87555 * 180.02562 * 13 12 11 34 34 H 1.09002 * 109.46983 * 144.99959 * 15 14 13 35 35 H 1.09000 * 109.47063 * 25.00906 * 15 14 13 36 36 H 0.97002 * 119.99581 * 359.97438 * 18 16 15 37 37 H 1.09002 * 109.46676 * 60.00018 * 19 18 16 38 38 H 1.08997 * 109.47173 * 299.99817 * 19 18 16 39 39 H 1.09009 * 109.47065 * 60.00231 * 20 19 18 40 40 H 1.09000 * 109.47285 * 300.00616 * 20 19 18 41 41 H 1.08995 * 109.47259 * 60.00640 * 21 20 19 42 42 H 1.09005 * 109.47167 * 299.99771 * 21 20 19 43 43 H 1.08998 * 109.59467 * 287.40641 * 23 22 21 44 44 H 1.08996 * 109.59756 * 47.86470 * 23 22 21 45 45 H 1.09005 * 109.37172 * 290.12987 * 24 23 22 46 46 H 1.09002 * 109.38365 * 170.47846 * 24 23 22 47 47 H 0.96993 * 118.53373 * 162.12694 * 25 24 23 48 48 H 1.09002 * 109.38922 * 53.51121 * 28 22 21 49 49 H 1.09003 * 109.38632 * 293.81972 * 28 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 2.3757 2.1122 -1.3938 5 1 1.5015 2.6169 0.8112 6 1 3.5922 1.4098 0.5828 7 6 2.0079 -1.2121 -0.0005 8 1 1.5075 -2.1246 0.2878 9 6 3.3701 -1.2418 -0.3786 10 6 3.8681 -0.3104 -1.3086 11 6 5.1939 -0.3529 -1.6742 12 6 6.0399 -1.3043 -1.1248 13 6 5.5617 -2.2226 -0.2031 14 6 4.2388 -2.1993 0.1765 15 6 3.7216 -3.1992 1.1783 16 6 3.1186 -4.3732 0.4509 17 8 3.1092 -4.3955 -0.7617 18 7 2.5888 -5.3980 1.1479 19 6 2.0021 -6.5390 0.4408 20 6 1.4772 -7.5542 1.4579 21 6 0.8650 -8.7461 0.7194 22 7 0.3605 -9.7207 1.6961 23 6 -0.6157 -9.0990 2.6056 24 6 -1.3314 -10.2029 3.3866 25 7 -0.3537 -11.1138 3.9752 26 6 0.9141 -11.1882 3.5572 27 8 1.6524 -11.9951 4.0814 28 6 1.4626 -10.3144 2.4648 29 1 -0.4850 0.8401 0.0004 30 1 3.2112 0.4320 -1.7374 31 1 5.5773 0.3577 -2.3915 32 1 7.0792 -1.3301 -1.4171 33 1 6.2295 -2.9590 0.2188 34 1 2.9615 -2.7288 1.8020 35 1 4.5439 -3.5437 1.8054 36 1 2.5960 -5.3799 2.1177 37 1 2.7621 -7.0097 -0.1829 38 1 1.1799 -6.1941 -0.1863 39 1 0.7173 -7.0837 2.0820 40 1 2.2996 -7.8990 2.0848 41 1 1.6251 -9.2166 0.0958 42 1 0.0426 -8.4017 0.0924 43 1 -0.0983 -8.4365 3.2995 44 1 -1.3434 -8.5299 2.0272 45 1 -1.9831 -10.7585 2.7122 46 1 -1.9311 -9.7549 4.1788 47 1 -0.6378 -11.6935 4.6991 48 1 2.0656 -9.5202 2.9051 49 1 2.0854 -10.9135 1.8005 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000777526310.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:26:41 Heat of formation + Delta-G solvation = -51.801191 kcal Electronic energy + Delta-G solvation = -29371.715210 eV Core-core repulsion = 25297.933640 eV Total energy + Delta-G solvation = -4073.781570 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -40.78547 -39.33053 -38.19329 -37.55744 -35.75718 -34.46619 -33.57638 -32.02376 -31.13416 -30.30194 -30.24822 -27.84124 -26.65342 -24.94497 -24.43593 -23.36081 -21.77410 -21.39061 -20.50513 -19.55895 -19.21785 -17.69695 -17.34092 -17.29319 -16.58110 -16.18348 -15.98586 -15.71104 -15.48823 -15.23138 -14.83407 -14.60686 -14.36163 -14.25604 -13.87118 -13.68798 -13.51788 -13.13205 -13.02037 -12.69883 -12.62924 -12.41260 -12.11973 -12.09189 -11.88520 -11.87885 -11.62414 -11.40229 -11.16512 -10.93951 -10.79570 -10.72063 -10.30851 -10.24209 -9.69950 -9.55352 -9.54018 -9.28917 -9.11357 -8.90205 -8.73977 -7.58098 -7.48682 -6.92925 -4.46501 2.21247 2.57569 2.73245 2.83206 3.12981 3.20247 3.25556 3.31451 3.33494 3.59022 3.99613 4.09964 4.26589 4.47707 4.52841 4.59616 4.67194 4.73327 4.86910 4.89886 5.05529 5.17171 5.28036 5.30280 5.35018 5.38691 5.58934 5.67441 5.81780 5.84985 5.92489 6.07515 6.10504 6.19450 6.20542 6.29459 6.30569 6.45282 6.59744 6.73827 6.75698 6.84083 6.96890 7.22200 7.44639 7.67827 7.76077 7.78325 7.89450 7.93598 8.16110 8.37175 8.70023 8.83315 8.84153 10.09335 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.016858 B = 0.002053 C = 0.001903 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1660.494840 B =13635.088720 C =14707.676056 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.811 5.811 2 C 0.084 3.916 3 Si 0.909 3.091 4 H -0.271 1.271 5 H -0.293 1.293 6 H -0.244 1.244 7 C -0.444 4.444 8 H 0.088 0.912 9 C 0.109 3.891 10 C -0.233 4.233 11 C -0.080 4.080 12 C -0.242 4.242 13 C -0.069 4.069 14 C -0.167 4.167 15 C -0.074 4.074 16 C 0.516 3.484 17 O -0.520 6.520 18 N -0.746 5.746 19 C 0.126 3.874 20 C -0.172 4.172 21 C 0.055 3.945 22 N -0.527 5.527 23 C 0.027 3.973 24 C 0.114 3.886 25 N -0.720 5.720 26 C 0.526 3.474 27 O -0.555 6.555 28 C 0.031 3.969 29 H 0.283 0.717 30 H 0.099 0.901 31 H 0.092 0.908 32 H 0.092 0.908 33 H 0.091 0.909 34 H 0.100 0.900 35 H 0.078 0.922 36 H 0.395 0.605 37 H 0.063 0.937 38 H 0.067 0.933 39 H 0.073 0.927 40 H 0.069 0.931 41 H 0.086 0.914 42 H 0.090 0.910 43 H 0.052 0.948 44 H 0.101 0.899 45 H 0.075 0.925 46 H 0.082 0.918 47 H 0.400 0.600 48 H 0.079 0.921 49 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.379 -15.698 8.139 18.003 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.435 5.435 2 C -0.134 4.134 3 Si 0.736 3.264 4 H -0.198 1.198 5 H -0.220 1.220 6 H -0.167 1.167 7 C -0.472 4.472 8 H 0.106 0.894 9 C 0.106 3.894 10 C -0.252 4.252 11 C -0.099 4.099 12 C -0.261 4.261 13 C -0.088 4.088 14 C -0.168 4.168 15 C -0.114 4.114 16 C 0.303 3.697 17 O -0.394 6.394 18 N -0.401 5.401 19 C 0.001 3.999 20 C -0.211 4.211 21 C -0.073 4.073 22 N -0.251 5.251 23 C -0.101 4.101 24 C -0.010 4.010 25 N -0.372 5.372 26 C 0.312 3.688 27 O -0.432 6.432 28 C -0.099 4.099 29 H 0.094 0.906 30 H 0.117 0.883 31 H 0.110 0.890 32 H 0.110 0.890 33 H 0.109 0.891 34 H 0.118 0.882 35 H 0.096 0.904 36 H 0.228 0.772 37 H 0.081 0.919 38 H 0.085 0.915 39 H 0.092 0.908 40 H 0.088 0.912 41 H 0.104 0.896 42 H 0.108 0.892 43 H 0.070 0.930 44 H 0.119 0.881 45 H 0.094 0.906 46 H 0.100 0.900 47 H 0.236 0.764 48 H 0.097 0.903 49 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -3.461 -16.291 7.067 18.092 hybrid contribution 0.326 1.279 1.040 1.680 sum -3.135 -15.013 8.107 17.347 Atomic orbital electron populations 1.69707 1.08059 1.30061 1.35716 1.26154 0.94680 1.01667 0.90891 0.86346 0.81308 0.79899 0.78825 1.19751 1.22016 1.16703 1.19392 0.92996 0.95665 1.39165 0.89376 1.17486 0.92646 0.90151 0.89103 1.20997 0.95557 1.04601 1.04063 1.20599 0.93919 0.97271 0.98070 1.20338 0.98197 1.01796 1.05792 1.20435 0.94612 0.96922 0.96812 1.19074 0.93083 1.01576 1.03102 1.20289 1.00565 0.92677 0.97856 1.21112 0.77274 0.82929 0.88403 1.90694 1.55842 1.78688 1.14148 1.46097 1.63199 1.20938 1.09833 1.21090 0.98172 0.86195 0.94399 1.22507 1.01481 0.97376 0.99748 1.22246 1.00713 0.90077 0.94292 1.62820 1.13444 1.32842 1.16021 1.22590 0.96332 0.95646 0.95571 1.21534 0.90955 0.91126 0.97410 1.45556 1.10630 1.42210 1.38818 1.20136 0.81785 0.83431 0.83419 1.90787 1.56796 1.37859 1.57796 1.22374 0.94485 0.98375 0.94699 0.90619 0.88335 0.89002 0.89000 0.89118 0.88220 0.90401 0.77216 0.91853 0.91501 0.90808 0.91244 0.89572 0.89175 0.92984 0.88072 0.90643 0.89968 0.76403 0.90345 0.86654 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -21.44 13.93 55.55 0.77 -20.66 16 2 C 0.08 2.20 5.41 -17.34 -0.09 2.10 16 3 Si 0.91 20.78 24.52 -169.99 -4.17 16.61 16 4 H -0.27 -6.12 6.71 56.52 0.38 -5.74 16 5 H -0.29 -6.41 7.11 56.52 0.40 -6.01 16 6 H -0.24 -5.68 6.85 56.52 0.39 -5.29 16 7 C -0.44 -11.82 8.56 -37.74 -0.32 -12.15 16 8 H 0.09 2.46 6.99 -52.49 -0.37 2.09 16 9 C 0.11 2.79 5.10 -106.83 -0.54 2.24 16 10 C -0.23 -5.82 7.17 -38.88 -0.28 -6.09 16 11 C -0.08 -1.82 10.02 -39.66 -0.40 -2.21 16 12 C -0.24 -5.22 10.05 -39.29 -0.39 -5.62 16 13 C -0.07 -1.50 9.66 -39.66 -0.38 -1.88 16 14 C -0.17 -3.81 4.43 -103.91 -0.46 -4.27 16 15 C -0.07 -1.38 5.19 -29.04 -0.15 -1.53 16 16 C 0.52 9.72 7.42 -10.99 -0.08 9.64 16 17 O -0.52 -12.30 16.03 5.55 0.09 -12.21 16 18 N -0.75 -10.14 5.56 -60.30 -0.34 -10.48 16 19 C 0.13 1.46 5.67 -4.04 -0.02 1.44 16 20 C -0.17 -1.29 4.63 -26.73 -0.12 -1.41 16 21 C 0.05 0.37 5.34 -3.82 -0.02 0.35 16 22 N -0.53 -3.56 4.95 -236.09 -1.17 -4.73 16 23 C 0.03 0.14 4.67 -3.67 -0.02 0.13 16 24 C 0.11 0.51 7.39 -4.31 -0.03 0.48 16 25 N -0.72 -4.88 5.52 -61.05 -0.34 -5.22 16 26 C 0.53 5.07 7.81 -11.68 -0.09 4.98 16 27 O -0.55 -7.62 17.82 5.55 0.10 -7.52 16 28 C 0.03 0.24 5.43 -5.19 -0.03 0.21 16 29 H 0.28 6.81 8.30 -40.82 -0.34 6.47 16 30 H 0.10 2.45 4.74 -52.48 -0.25 2.20 16 31 H 0.09 1.81 8.06 -52.48 -0.42 1.39 16 32 H 0.09 1.73 8.06 -52.49 -0.42 1.30 16 33 H 0.09 1.69 8.06 -52.49 -0.42 1.26 16 34 H 0.10 1.84 7.15 -51.93 -0.37 1.47 16 35 H 0.08 1.17 8.05 -51.93 -0.42 0.75 16 36 H 0.39 4.13 8.47 -40.82 -0.35 3.78 16 37 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 38 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 39 H 0.07 0.53 6.65 -51.92 -0.35 0.19 16 40 H 0.07 0.49 6.42 -51.93 -0.33 0.16 16 41 H 0.09 0.57 8.12 -51.93 -0.42 0.15 16 42 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 43 H 0.05 0.29 6.96 -51.93 -0.36 -0.07 16 44 H 0.10 0.45 8.06 -51.93 -0.42 0.03 16 45 H 0.08 0.32 8.14 -51.93 -0.42 -0.11 16 46 H 0.08 0.21 8.14 -51.93 -0.42 -0.21 16 47 H 0.40 2.31 8.84 -40.82 -0.36 1.95 16 48 H 0.08 0.56 6.20 -51.93 -0.32 0.24 16 49 H 0.12 0.88 8.14 -51.93 -0.42 0.45 16 LS Contribution 390.93 15.07 5.89 5.89 Total: -1.00 -34.54 390.93 -9.89 -44.43 By element: Atomic # 1 Polarization: 14.77 SS G_CDS: -7.29 Total: 7.48 kcal Atomic # 6 Polarization: -10.14 SS G_CDS: -3.44 Total: -13.59 kcal Atomic # 7 Polarization: -40.02 SS G_CDS: -1.07 Total: -41.09 kcal Atomic # 8 Polarization: -19.92 SS G_CDS: 0.19 Total: -19.73 kcal Atomic # 14 Polarization: 20.78 SS G_CDS: -4.17 Total: 16.61 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -34.54 -9.89 -44.43 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000777526310.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.371 kcal (2) G-P(sol) polarization free energy of solvation -34.542 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.914 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.888 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.430 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.801 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds