Wall clock time and date at job start Wed Apr 1 2020 02:59:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86794 * 120.00201 * 2 1 4 4 H 1.48508 * 109.46875 * 270.00180 * 3 2 1 5 5 H 1.48496 * 109.47376 * 29.99705 * 3 2 1 6 6 H 1.48494 * 109.47691 * 150.00239 * 3 2 1 7 7 C 1.38809 * 119.99707 * 179.97438 * 2 1 3 8 8 H 1.08007 * 120.00030 * 163.79135 * 7 2 1 9 9 N 1.36932 * 120.00611 * 343.79536 * 7 2 1 10 10 C 1.46350 * 120.78440 * 153.83939 * 9 7 2 11 11 C 1.53889 * 108.16078 * 132.70662 * 10 9 7 12 12 H 1.08996 * 112.58236 * 182.36995 * 11 10 9 13 13 C 1.54544 * 107.83154 * 306.65756 * 11 10 9 14 14 C 1.54275 * 104.85265 * 89.06572 * 13 11 10 15 15 C 1.54969 * 104.80946 * 359.81211 * 14 13 11 16 16 H 1.08996 * 112.25842 * 146.61063 * 15 14 13 17 17 C 1.47173 * 120.70566 * 334.13829 * 9 7 2 18 18 N 1.48311 * 104.14941 * 24.99200 * 15 14 13 19 19 C 1.34771 * 128.07665 * 139.04405 * 18 15 14 20 20 O 1.21495 * 120.00096 * 179.67963 * 19 18 15 21 21 C 1.48327 * 120.00021 * 359.67767 * 19 18 15 22 22 N 1.31343 * 127.12941 * 0.02940 * 21 19 18 23 23 O 1.21248 * 111.48434 * 179.89980 * 22 21 19 24 24 C 1.33633 * 111.64599 * 359.64569 * 23 22 21 25 25 C 1.35002 * 106.59587 * 0.63355 * 24 23 22 26 26 C 1.50082 * 126.58863 * 178.47147 * 25 24 23 27 27 C 1.53328 * 108.96505 * 27.98127 * 26 25 24 28 28 C 1.52668 * 109.50842 * 271.45014 * 27 26 25 29 29 C 1.52614 * 110.91487 * 61.43152 * 28 27 26 30 30 C 1.50605 * 128.02680 * 180.75076 * 24 23 22 31 31 H 0.97000 * 119.99658 * 359.97438 * 1 2 3 32 32 H 1.09003 * 109.56249 * 13.11056 * 10 9 7 33 33 H 1.08998 * 109.81282 * 252.45521 * 10 9 7 34 34 H 1.08996 * 110.36137 * 207.90859 * 13 11 10 35 35 H 1.09000 * 110.36319 * 330.11165 * 13 11 10 36 36 H 1.08995 * 110.36751 * 118.84479 * 14 13 11 37 37 H 1.08996 * 110.36643 * 241.05140 * 14 13 11 38 38 H 1.09002 * 109.74488 * 107.61508 * 17 9 7 39 39 H 1.08996 * 109.78806 * 346.90039 * 17 9 7 40 40 H 1.09002 * 109.55072 * 147.82245 * 26 25 24 41 41 H 1.08999 * 109.55199 * 268.02514 * 26 25 24 42 42 H 1.08998 * 109.46909 * 31.46500 * 27 26 25 43 43 H 1.08999 * 109.46363 * 151.44514 * 27 26 25 44 44 H 1.08999 * 109.18382 * 181.79536 * 28 27 26 45 45 H 1.08999 * 109.19051 * 301.05579 * 28 27 26 46 46 H 1.09002 * 109.39472 * 273.52292 * 29 28 27 47 47 H 1.08994 * 109.40202 * 153.76979 * 29 28 27 48 48 H 1.09004 * 109.53414 * 346.74534 * 30 24 23 49 49 H 1.08996 * 109.53775 * 106.98029 * 30 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4977 2.0463 -1.4002 5 1 1.4478 2.6526 0.6999 6 1 3.5478 1.4402 0.6999 7 6 2.0102 -1.2022 0.0005 8 1 3.0581 -1.2209 -0.2605 9 7 1.3664 -2.3644 0.3320 10 6 1.8382 -3.6532 -0.1762 11 6 1.8948 -4.6416 1.0018 12 1 2.2786 -5.6192 0.7099 13 6 2.7393 -3.9942 2.1227 14 6 1.7268 -3.1956 2.9694 15 6 0.3599 -3.4301 2.2780 16 1 -0.4645 -3.4541 2.9905 17 6 0.1800 -2.3443 1.2025 18 7 0.5280 -4.7235 1.5719 19 6 -0.3568 -5.7347 1.4676 20 8 -0.0651 -6.7352 0.8431 21 6 -1.6868 -5.6262 2.1152 22 7 -2.1461 -4.6164 2.8185 23 8 -3.2722 -4.8274 3.2152 24 6 -3.7202 -6.0212 2.8153 25 6 -2.7235 -6.5881 2.1027 26 6 -2.7379 -7.9493 1.4707 27 6 -4.1850 -8.3259 1.1315 28 6 -4.8255 -9.0206 2.3306 29 6 -4.8627 -8.0929 3.5418 30 6 -5.0646 -6.6450 3.0831 31 1 -0.4849 0.8401 0.0004 32 1 2.8332 -3.5342 -0.6053 33 1 1.1508 -4.0247 -0.9361 34 1 3.2179 -4.7631 2.7291 35 1 3.4887 -3.3276 1.6960 36 1 1.7075 -3.5716 3.9923 37 1 1.9781 -2.1350 2.9607 38 1 -0.7127 -2.5539 0.6132 39 1 0.0871 -1.3675 1.6772 40 1 -2.1415 -7.9342 0.5585 41 1 -2.3227 -8.6787 2.1661 42 1 -4.7481 -7.4243 0.8906 43 1 -4.1937 -8.9992 0.2744 44 1 -5.8430 -9.3144 2.0729 45 1 -4.2483 -9.9113 2.5790 46 1 -3.9225 -8.1721 4.0875 47 1 -5.6850 -8.3837 4.1954 48 1 -5.5779 -6.0835 3.8639 49 1 -5.6610 -6.6314 2.1709 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001018009868.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:59:42 Heat of formation + Delta-G solvation = 60.639542 kcal Electronic energy + Delta-G solvation = -32107.982652 eV Core-core repulsion = 28039.076879 eV Total energy + Delta-G solvation = -4068.905774 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -44.98593 -40.08929 -38.42176 -37.72158 -34.17087 -33.99214 -32.05691 -31.83426 -31.03032 -30.64452 -30.29938 -26.56836 -26.21928 -25.01716 -24.52871 -23.62726 -22.64498 -21.16831 -20.40784 -20.14370 -19.89133 -18.35478 -17.71518 -17.37574 -16.81492 -16.05043 -15.60454 -15.26853 -15.10621 -15.02818 -14.49065 -14.34054 -13.88924 -13.61168 -13.49754 -13.38704 -13.07732 -12.96516 -12.78158 -12.58450 -12.18881 -12.09849 -11.97099 -11.79633 -11.52443 -11.39086 -11.13589 -11.12706 -10.85438 -10.81539 -10.63920 -10.49342 -10.46286 -10.29811 -10.11546 -10.00578 -9.79930 -9.72386 -9.66385 -9.08728 -8.56216 -8.26395 -6.72301 -5.82398 -3.24990 1.28950 1.75777 2.92270 3.17652 3.34809 3.42280 3.43715 3.49205 4.11670 4.39685 4.45471 4.50285 4.59647 4.71999 4.78909 4.87922 5.07856 5.12333 5.13772 5.24729 5.35012 5.37963 5.43887 5.48734 5.51625 5.58234 5.61514 5.69620 5.71855 5.79718 5.80885 5.88626 5.93344 5.98985 6.08385 6.10460 6.26401 6.28346 6.37537 6.41705 6.41864 6.58873 6.71241 6.83235 6.98269 7.22128 7.51999 7.72857 7.97940 8.12236 8.35462 8.45212 9.14054 9.77514 10.34106 11.25880 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.018425 B = 0.003184 C = 0.002967 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1519.274673 B = 8790.838526 C = 9434.326007 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.003 3.997 3 Si 0.903 3.097 4 H -0.288 1.288 5 H -0.290 1.290 6 H -0.279 1.279 7 C -0.253 4.253 8 H 0.069 0.931 9 N -0.587 5.587 10 C 0.140 3.860 11 C 0.116 3.884 12 H 0.092 0.908 13 C -0.111 4.111 14 C -0.112 4.112 15 C 0.090 3.910 16 H 0.104 0.896 17 C 0.177 3.823 18 N -0.589 5.589 19 C 0.610 3.390 20 O -0.543 6.543 21 C -0.009 4.009 22 N -0.323 5.323 23 O 0.121 5.879 24 C -0.043 4.043 25 C -0.148 4.148 26 C -0.045 4.045 27 C -0.126 4.126 28 C -0.122 4.122 29 C -0.116 4.116 30 C -0.036 4.036 31 H 0.255 0.745 32 H 0.065 0.935 33 H 0.019 0.981 34 H 0.053 0.947 35 H 0.084 0.916 36 H 0.050 0.950 37 H 0.087 0.913 38 H 0.021 0.979 39 H 0.094 0.906 40 H 0.091 0.909 41 H 0.079 0.921 42 H 0.070 0.930 43 H 0.070 0.930 44 H 0.064 0.936 45 H 0.066 0.934 46 H 0.068 0.932 47 H 0.076 0.924 48 H 0.088 0.912 49 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.093 -15.760 8.451 20.061 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.196 4.196 3 Si 0.733 3.267 4 H -0.215 1.215 5 H -0.216 1.216 6 H -0.204 1.204 7 C -0.382 4.382 8 H 0.087 0.913 9 N -0.310 5.310 10 C 0.012 3.988 11 C 0.012 3.988 12 H 0.110 0.890 13 C -0.150 4.150 14 C -0.151 4.151 15 C -0.014 4.014 16 H 0.122 0.878 17 C 0.051 3.949 18 N -0.321 5.321 19 C 0.397 3.603 20 O -0.420 6.420 21 C -0.168 4.168 22 N -0.025 5.025 23 O 0.047 5.953 24 C -0.107 4.107 25 C -0.153 4.153 26 C -0.082 4.082 27 C -0.163 4.163 28 C -0.159 4.159 29 C -0.154 4.154 30 C -0.074 4.074 31 H 0.065 0.935 32 H 0.083 0.917 33 H 0.037 0.963 34 H 0.071 0.929 35 H 0.103 0.897 36 H 0.069 0.931 37 H 0.106 0.894 38 H 0.039 0.961 39 H 0.112 0.888 40 H 0.110 0.890 41 H 0.098 0.902 42 H 0.088 0.912 43 H 0.089 0.911 44 H 0.083 0.917 45 H 0.084 0.916 46 H 0.087 0.913 47 H 0.094 0.906 48 H 0.106 0.894 49 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -8.523 -15.014 8.427 19.211 hybrid contribution 0.236 0.416 -0.383 0.613 sum -8.287 -14.597 8.044 18.614 Atomic orbital electron populations 1.70031 1.05245 1.25603 1.53899 1.25037 0.95298 0.98397 1.00836 0.86288 0.79091 0.83618 0.77715 1.21453 1.21560 1.20436 1.19158 0.92375 0.84343 1.42337 0.91335 1.43916 1.32148 1.01213 1.53687 1.21289 0.98469 0.86786 0.92243 1.23021 0.80628 0.99382 0.95795 0.89017 1.22314 0.97871 0.98574 0.96201 1.22387 0.94134 1.01842 0.96717 1.23775 0.98258 0.83209 0.96155 0.87808 1.21221 0.88641 0.95891 0.89167 1.49089 1.15329 1.16491 1.51189 1.16366 0.81222 0.82393 0.80336 1.90717 1.77348 1.30439 1.43537 1.23166 0.98327 0.92378 1.02892 1.74513 0.94108 1.21289 1.12589 1.84793 1.22699 1.31800 1.55961 1.24042 0.99217 0.86847 1.00581 1.20618 0.92105 0.99437 1.03115 1.19971 0.97266 0.89789 1.01217 1.21754 0.95456 1.01048 0.98034 1.21551 1.01064 0.98488 0.94827 1.21580 1.02932 0.92684 0.98219 1.20230 0.88563 0.95128 1.03513 0.93529 0.91672 0.96332 0.92866 0.89729 0.93117 0.89435 0.96076 0.88801 0.89037 0.90247 0.91163 0.91106 0.91747 0.91559 0.91309 0.90558 0.89355 0.88294 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.95 11.12 55.49 0.62 -25.33 16 2 C 0.00 0.08 4.95 -17.43 -0.09 -0.01 16 3 Si 0.90 21.28 29.58 -169.99 -5.03 16.25 16 4 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 5 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 6 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 7 C -0.25 -6.69 9.63 -15.06 -0.15 -6.84 16 8 H 0.07 1.77 7.87 -52.48 -0.41 1.35 16 9 N -0.59 -14.43 2.26 -171.72 -0.39 -14.82 16 10 C 0.14 3.02 5.98 -3.66 -0.02 3.00 16 11 C 0.12 2.19 4.12 -65.66 -0.27 1.92 16 12 H 0.09 1.65 7.93 -51.93 -0.41 1.23 16 13 C -0.11 -1.91 6.18 -25.25 -0.16 -2.07 16 14 C -0.11 -2.03 6.21 -25.02 -0.16 -2.19 16 15 C 0.09 1.81 3.84 -65.43 -0.25 1.56 16 16 H 0.10 2.04 5.55 -51.93 -0.29 1.76 16 17 C 0.18 4.28 4.60 -3.21 -0.01 4.26 16 18 N -0.59 -11.78 2.74 -153.70 -0.42 -12.21 16 19 C 0.61 12.24 7.95 -12.11 -0.10 12.15 16 20 O -0.54 -11.46 15.82 5.37 0.08 -11.38 16 21 C -0.01 -0.16 7.06 -82.71 -0.58 -0.75 16 22 N -0.32 -5.67 9.30 33.32 0.31 -5.36 16 23 O 0.12 1.79 11.18 18.14 0.20 1.99 16 24 C -0.04 -0.53 6.64 -35.50 -0.24 -0.77 16 25 C -0.15 -2.12 5.72 -104.85 -0.60 -2.72 16 26 C -0.04 -0.54 5.36 -28.01 -0.15 -0.69 16 27 C -0.13 -1.09 5.55 -26.73 -0.15 -1.24 16 28 C -0.12 -0.80 5.64 -27.10 -0.15 -0.95 16 29 C -0.12 -0.77 5.63 -26.81 -0.15 -0.92 16 30 C -0.04 -0.28 5.55 -27.81 -0.15 -0.43 16 31 H 0.25 7.11 8.31 -40.82 -0.34 6.77 16 32 H 0.06 1.32 7.94 -51.93 -0.41 0.90 16 33 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 34 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 35 H 0.08 1.49 7.84 -51.93 -0.41 1.08 16 36 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 37 H 0.09 1.70 7.85 -51.93 -0.41 1.30 16 38 H 0.02 0.58 8.14 -51.93 -0.42 0.15 16 39 H 0.09 2.47 6.28 -51.93 -0.33 2.15 16 40 H 0.09 1.30 7.08 -51.93 -0.37 0.93 16 41 H 0.08 0.90 7.83 -51.93 -0.41 0.49 16 42 H 0.07 0.63 5.68 -51.93 -0.30 0.33 16 43 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 44 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 45 H 0.07 0.42 8.09 -51.93 -0.42 0.00 16 46 H 0.07 0.54 7.79 -51.93 -0.40 0.14 16 47 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 48 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 49 H 0.10 0.66 6.37 -51.93 -0.33 0.33 16 LS Contribution 371.49 15.07 5.60 5.60 Total: -1.00 -31.24 371.49 -9.81 -41.05 By element: Atomic # 1 Polarization: 8.30 SS G_CDS: -7.41 Total: 0.89 kcal Atomic # 6 Polarization: 6.69 SS G_CDS: -3.37 Total: 3.32 kcal Atomic # 7 Polarization: -57.83 SS G_CDS: 0.12 Total: -57.71 kcal Atomic # 8 Polarization: -9.67 SS G_CDS: 0.29 Total: -9.39 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.03 Total: 16.25 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -31.24 -9.81 -41.05 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001018009868.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.687 kcal (2) G-P(sol) polarization free energy of solvation -31.240 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.447 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.807 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.047 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.640 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds