Wall clock time and date at job start Wed Apr 1 2020 02:59:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86794 * 120.00201 * 2 1 4 4 H 1.48508 * 109.46875 * 270.00180 * 3 2 1 5 5 H 1.48496 * 109.47376 * 29.99705 * 3 2 1 6 6 H 1.48494 * 109.47691 * 150.00239 * 3 2 1 7 7 C 1.38809 * 119.99707 * 179.97438 * 2 1 3 8 8 H 1.08007 * 120.00030 * 163.79135 * 7 2 1 9 9 N 1.36932 * 120.00611 * 343.79536 * 7 2 1 10 10 C 1.46350 * 120.78440 * 153.83939 * 9 7 2 11 11 C 1.53889 * 108.16078 * 132.70662 * 10 9 7 12 12 H 1.08996 * 112.58236 * 182.36995 * 11 10 9 13 13 C 1.54544 * 107.83154 * 306.65756 * 11 10 9 14 14 C 1.54275 * 104.85265 * 89.06572 * 13 11 10 15 15 C 1.54969 * 104.80946 * 359.81211 * 14 13 11 16 16 H 1.08996 * 112.25842 * 146.61063 * 15 14 13 17 17 C 1.47173 * 120.70566 * 334.13829 * 9 7 2 18 18 N 1.48311 * 104.14941 * 24.99200 * 15 14 13 19 19 C 1.34771 * 128.07665 * 139.04405 * 18 15 14 20 20 O 1.21495 * 120.00096 * 179.67963 * 19 18 15 21 21 C 1.48327 * 120.00021 * 359.67767 * 19 18 15 22 22 N 1.31343 * 127.12941 * 0.02940 * 21 19 18 23 23 O 1.21248 * 111.48434 * 179.89980 * 22 21 19 24 24 C 1.33633 * 111.64599 * 359.64569 * 23 22 21 25 25 C 1.35002 * 106.59587 * 0.63355 * 24 23 22 26 26 C 1.50082 * 126.58863 * 178.47147 * 25 24 23 27 27 C 1.53328 * 108.96505 * 27.98127 * 26 25 24 28 28 C 1.52668 * 109.50842 * 271.45014 * 27 26 25 29 29 C 1.52614 * 110.91487 * 61.43152 * 28 27 26 30 30 C 1.50605 * 128.02680 * 180.75076 * 24 23 22 31 31 H 0.97000 * 119.99658 * 359.97438 * 1 2 3 32 32 H 1.09003 * 109.56249 * 13.11056 * 10 9 7 33 33 H 1.08998 * 109.81282 * 252.45521 * 10 9 7 34 34 H 1.08996 * 110.36137 * 207.90859 * 13 11 10 35 35 H 1.09000 * 110.36319 * 330.11165 * 13 11 10 36 36 H 1.08995 * 110.36751 * 118.84479 * 14 13 11 37 37 H 1.08996 * 110.36643 * 241.05140 * 14 13 11 38 38 H 1.09002 * 109.74488 * 107.61508 * 17 9 7 39 39 H 1.08996 * 109.78806 * 346.90039 * 17 9 7 40 40 H 1.09002 * 109.55072 * 147.82245 * 26 25 24 41 41 H 1.08999 * 109.55199 * 268.02514 * 26 25 24 42 42 H 1.08998 * 109.46909 * 31.46500 * 27 26 25 43 43 H 1.08999 * 109.46363 * 151.44514 * 27 26 25 44 44 H 1.08999 * 109.18382 * 181.79536 * 28 27 26 45 45 H 1.08999 * 109.19051 * 301.05579 * 28 27 26 46 46 H 1.09002 * 109.39472 * 273.52292 * 29 28 27 47 47 H 1.08994 * 109.40202 * 153.76979 * 29 28 27 48 48 H 1.09004 * 109.53414 * 346.74534 * 30 24 23 49 49 H 1.08996 * 109.53775 * 106.98029 * 30 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4977 2.0463 -1.4002 5 1 1.4478 2.6526 0.6999 6 1 3.5478 1.4402 0.6999 7 6 2.0102 -1.2022 0.0005 8 1 3.0581 -1.2209 -0.2605 9 7 1.3664 -2.3644 0.3320 10 6 1.8382 -3.6532 -0.1762 11 6 1.8948 -4.6416 1.0018 12 1 2.2786 -5.6192 0.7099 13 6 2.7393 -3.9942 2.1227 14 6 1.7268 -3.1956 2.9694 15 6 0.3599 -3.4301 2.2780 16 1 -0.4645 -3.4541 2.9905 17 6 0.1800 -2.3443 1.2025 18 7 0.5280 -4.7235 1.5719 19 6 -0.3568 -5.7347 1.4676 20 8 -0.0651 -6.7352 0.8431 21 6 -1.6868 -5.6262 2.1152 22 7 -2.1461 -4.6164 2.8185 23 8 -3.2722 -4.8274 3.2152 24 6 -3.7202 -6.0212 2.8153 25 6 -2.7235 -6.5881 2.1027 26 6 -2.7379 -7.9493 1.4707 27 6 -4.1850 -8.3259 1.1315 28 6 -4.8255 -9.0206 2.3306 29 6 -4.8627 -8.0929 3.5418 30 6 -5.0646 -6.6450 3.0831 31 1 -0.4849 0.8401 0.0004 32 1 2.8332 -3.5342 -0.6053 33 1 1.1508 -4.0247 -0.9361 34 1 3.2179 -4.7631 2.7291 35 1 3.4887 -3.3276 1.6960 36 1 1.7075 -3.5716 3.9923 37 1 1.9781 -2.1350 2.9607 38 1 -0.7127 -2.5539 0.6132 39 1 0.0871 -1.3675 1.6772 40 1 -2.1415 -7.9342 0.5585 41 1 -2.3227 -8.6787 2.1661 42 1 -4.7481 -7.4243 0.8906 43 1 -4.1937 -8.9992 0.2744 44 1 -5.8430 -9.3144 2.0729 45 1 -4.2483 -9.9113 2.5790 46 1 -3.9225 -8.1721 4.0875 47 1 -5.6850 -8.3837 4.1954 48 1 -5.5779 -6.0835 3.8639 49 1 -5.6610 -6.6314 2.1709 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001018009868.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:59:41 Heat of formation + Delta-G solvation = 43.948263 kcal Electronic energy + Delta-G solvation = -32108.706441 eV Core-core repulsion = 28039.076879 eV Total energy + Delta-G solvation = -4069.629562 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -46.21835 -41.71816 -39.56416 -38.96579 -36.05509 -35.21681 -33.37033 -32.90802 -32.57196 -32.19785 -31.83287 -28.28399 -27.30816 -26.01840 -25.79690 -25.32739 -24.37640 -22.54222 -21.78636 -21.57009 -20.59545 -19.95258 -19.04140 -18.82441 -18.11569 -17.70896 -17.08074 -16.71336 -16.40855 -16.24610 -15.98421 -15.68725 -15.33600 -15.03812 -14.77107 -14.49856 -14.40372 -14.35998 -14.23268 -13.74574 -13.70120 -13.40903 -13.33644 -12.94189 -12.89033 -12.83983 -12.68736 -12.32674 -12.17487 -12.15522 -12.13607 -11.79459 -11.77478 -11.62514 -11.55047 -11.38237 -11.34658 -11.24966 -11.13989 -10.63374 -10.11484 -9.96861 -8.75576 -7.90021 -5.36980 0.00911 0.61667 1.46995 1.48500 1.58014 1.61198 1.96367 2.02336 2.48903 2.77949 3.25871 3.32620 3.44353 3.63145 3.74500 3.81545 3.90157 3.94011 3.96038 4.08003 4.11011 4.14184 4.25279 4.29207 4.37819 4.43652 4.49501 4.63483 4.73702 4.76408 4.79249 4.82703 4.88228 4.94305 4.95390 5.00534 5.03210 5.07391 5.17512 5.18271 5.26360 5.28229 5.35001 5.43748 5.46439 5.50834 5.53005 5.61611 6.28802 6.38347 6.75383 7.04998 7.06525 7.74851 8.29443 9.16776 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.018425 B = 0.003184 C = 0.002967 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1519.274673 B = 8790.838526 C = 9434.326007 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.941 5.941 2 C -0.051 4.051 3 Si 0.972 3.028 4 H -0.289 1.289 5 H -0.295 1.295 6 H -0.264 1.264 7 C -0.258 4.258 8 H 0.079 0.921 9 N -0.597 5.597 10 C 0.138 3.862 11 C 0.118 3.882 12 H 0.106 0.894 13 C -0.101 4.101 14 C -0.107 4.107 15 C 0.102 3.898 16 H 0.108 0.892 17 C 0.194 3.806 18 N -0.595 5.595 19 C 0.605 3.395 20 O -0.560 6.560 21 C -0.043 4.043 22 N -0.350 5.350 23 O 0.127 5.873 24 C -0.022 4.022 25 C -0.162 4.162 26 C -0.042 4.042 27 C -0.121 4.121 28 C -0.118 4.118 29 C -0.113 4.113 30 C -0.037 4.037 31 H 0.250 0.750 32 H 0.081 0.919 33 H -0.010 1.010 34 H 0.085 0.915 35 H 0.083 0.917 36 H 0.079 0.921 37 H 0.072 0.928 38 H -0.026 1.026 39 H 0.068 0.932 40 H 0.061 0.939 41 H 0.084 0.916 42 H 0.068 0.932 43 H 0.078 0.922 44 H 0.087 0.913 45 H 0.069 0.931 46 H 0.054 0.946 47 H 0.105 0.895 48 H 0.112 0.888 49 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.558 -17.267 10.161 22.198 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.587 5.587 2 C -0.246 4.246 3 Si 0.799 3.201 4 H -0.216 1.216 5 H -0.221 1.221 6 H -0.188 1.188 7 C -0.387 4.387 8 H 0.096 0.904 9 N -0.320 5.320 10 C 0.012 3.988 11 C 0.014 3.986 12 H 0.124 0.876 13 C -0.139 4.139 14 C -0.145 4.145 15 C -0.003 4.003 16 H 0.126 0.874 17 C 0.067 3.933 18 N -0.327 5.327 19 C 0.392 3.608 20 O -0.439 6.439 21 C -0.199 4.199 22 N -0.051 5.051 23 O 0.052 5.948 24 C -0.086 4.086 25 C -0.167 4.167 26 C -0.079 4.079 27 C -0.158 4.158 28 C -0.155 4.155 29 C -0.151 4.151 30 C -0.075 4.075 31 H 0.059 0.941 32 H 0.099 0.901 33 H 0.008 0.992 34 H 0.103 0.897 35 H 0.101 0.899 36 H 0.097 0.903 37 H 0.091 0.909 38 H -0.008 1.008 39 H 0.086 0.914 40 H 0.080 0.920 41 H 0.103 0.897 42 H 0.087 0.913 43 H 0.097 0.903 44 H 0.105 0.895 45 H 0.088 0.912 46 H 0.072 0.928 47 H 0.124 0.876 48 H 0.130 0.870 49 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -8.945 -16.545 10.135 21.365 hybrid contribution 0.280 0.823 -0.984 1.314 sum -8.665 -15.721 9.150 20.149 Atomic orbital electron populations 1.70218 1.06909 1.25912 1.55648 1.25836 0.95967 1.01664 1.01108 0.85217 0.78211 0.79252 0.77386 1.21583 1.22134 1.18805 1.19548 0.92880 0.85032 1.41274 0.90373 1.44115 1.31906 1.01927 1.54037 1.21389 0.98287 0.86203 0.92963 1.23003 0.80870 0.99317 0.95379 0.87561 1.22280 0.97126 0.99016 0.95464 1.22349 0.92665 1.01295 0.98196 1.23502 1.00030 0.81923 0.94813 0.87443 1.20860 0.86933 0.96037 0.89434 1.49171 1.15803 1.16345 1.51384 1.16747 0.81919 0.82116 0.79970 1.90686 1.77922 1.31030 1.44225 1.23168 0.98360 0.94092 1.04320 1.74466 0.95347 1.21808 1.13442 1.84745 1.21745 1.32931 1.55376 1.24907 1.00314 0.85091 0.98283 1.20944 0.91671 1.00072 1.04046 1.19999 0.99399 0.88839 0.99704 1.21755 0.93044 1.01424 0.99620 1.21545 1.02107 0.98238 0.93630 1.21609 1.03394 0.91616 0.98469 1.20594 0.85883 0.95776 1.05221 0.94140 0.90060 0.99214 0.89690 0.89874 0.90288 0.90940 1.00792 0.91410 0.92019 0.89736 0.91317 0.90295 0.89468 0.91210 0.92761 0.87627 0.86983 0.86582 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.29 11.12 21.65 0.24 -56.05 16 2 C -0.05 -2.81 4.95 84.86 0.42 -2.39 16 3 Si 0.97 44.36 29.58 68.60 2.03 46.39 16 4 H -0.29 -13.17 7.11 99.48 0.71 -12.46 16 5 H -0.29 -13.62 7.11 99.48 0.71 -12.91 16 6 H -0.26 -11.28 7.11 99.48 0.71 -10.57 16 7 C -0.26 -13.84 9.63 84.03 0.81 -13.03 16 8 H 0.08 3.99 7.87 -2.91 -0.02 3.96 16 9 N -0.60 -30.27 2.26 -697.21 -1.58 -31.84 16 10 C 0.14 6.12 5.98 86.71 0.52 6.63 16 11 C 0.12 4.44 4.12 45.47 0.19 4.63 16 12 H 0.11 3.72 7.93 -2.39 -0.02 3.70 16 13 C -0.10 -3.27 6.18 31.55 0.20 -3.08 16 14 C -0.11 -3.76 6.21 31.70 0.20 -3.56 16 15 C 0.10 4.18 3.84 45.61 0.18 4.36 16 16 H 0.11 4.37 5.55 -2.39 -0.01 4.36 16 17 C 0.19 9.88 4.60 86.55 0.40 10.28 16 18 N -0.60 -24.32 2.74 -758.48 -2.08 -26.40 16 19 C 0.60 25.08 7.95 86.93 0.69 25.77 16 20 O -0.56 -24.39 15.82 -3.70 -0.06 -24.45 16 21 C -0.04 -1.58 7.06 42.69 0.30 -1.28 16 22 N -0.35 -12.62 9.30 -49.01 -0.46 -13.08 16 23 O 0.13 3.75 11.18 74.99 0.84 4.59 16 24 C -0.02 -0.52 6.64 24.91 0.17 -0.35 16 25 C -0.16 -4.67 5.72 -20.02 -0.11 -4.78 16 26 C -0.04 -1.00 5.36 29.76 0.16 -0.84 16 27 C -0.12 -1.89 5.55 30.59 0.17 -1.72 16 28 C -0.12 -1.16 5.64 30.36 0.17 -0.99 16 29 C -0.11 -1.10 5.63 30.54 0.17 -0.92 16 30 C -0.04 -0.45 5.55 29.89 0.17 -0.29 16 31 H 0.25 14.52 8.31 -92.71 -0.77 13.74 16 32 H 0.08 3.28 7.94 -2.39 -0.02 3.26 16 33 H -0.01 -0.50 8.14 -2.39 -0.02 -0.52 16 34 H 0.08 2.27 8.14 -2.39 -0.02 2.26 16 35 H 0.08 2.76 7.84 -2.39 -0.02 2.74 16 36 H 0.08 2.36 8.14 -2.39 -0.02 2.34 16 37 H 0.07 2.79 7.85 -2.39 -0.02 2.77 16 38 H -0.03 -1.53 8.14 -2.39 -0.02 -1.55 16 39 H 0.07 3.78 6.28 -2.39 -0.02 3.77 16 40 H 0.06 1.84 7.08 -2.39 -0.02 1.82 16 41 H 0.08 1.89 7.83 -2.39 -0.02 1.87 16 42 H 0.07 1.09 5.68 -2.39 -0.01 1.08 16 43 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 44 H 0.09 0.53 8.14 -2.39 -0.02 0.51 16 45 H 0.07 0.68 8.09 -2.39 -0.02 0.66 16 46 H 0.05 0.71 7.79 -2.39 -0.02 0.70 16 47 H 0.11 0.49 8.14 -2.39 -0.02 0.47 16 48 H 0.11 0.91 8.14 -2.38 -0.02 0.89 16 49 H 0.12 1.13 6.37 -2.39 -0.02 1.12 16 Total: -1.00 -71.99 371.49 4.68 -67.30 By element: Atomic # 1 Polarization: 14.13 SS G_CDS: 0.97 Total: 15.09 kcal Atomic # 6 Polarization: 13.65 SS G_CDS: 4.78 Total: 18.43 kcal Atomic # 7 Polarization: -123.49 SS G_CDS: -3.87 Total: -127.36 kcal Atomic # 8 Polarization: -20.64 SS G_CDS: 0.78 Total: -19.86 kcal Atomic # 14 Polarization: 44.36 SS G_CDS: 2.03 Total: 46.39 kcal Total: -71.99 4.68 -67.30 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001018009868.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.252 kcal (2) G-P(sol) polarization free energy of solvation -71.987 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.265 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.684 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.303 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.948 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds