Wall clock time and date at job start Wed Apr 1 2020 03:41:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38357 * 119.92857 * 2 1 4 4 C 1.38360 * 120.29375 * 180.02562 * 3 2 1 5 5 C 1.50702 * 119.92752 * 180.02562 * 4 3 2 6 6 C 1.37957 * 120.14223 * 359.97438 * 4 3 2 7 7 C 1.39580 * 119.85568 * 0.02562 * 6 4 3 8 8 C 1.47841 * 120.14730 * 179.97438 * 7 6 4 9 9 O 1.21562 * 119.99710 * 0.02562 * 8 7 6 10 10 N 1.34774 * 120.00417 * 180.02562 * 8 7 6 11 11 C 1.46502 * 120.00215 * 180.02562 * 10 8 7 12 12 C 1.50701 * 109.46804 * 180.02562 * 11 10 8 13 13 C 1.30994 * 119.99826 * 125.27541 * 12 11 10 14 14 C 1.50702 * 120.00204 * 179.71900 * 13 12 11 15 15 N 1.46901 * 109.47213 * 124.99711 * 14 13 12 16 16 C 1.46900 * 110.99893 * 180.02562 * 15 14 13 17 17 C 1.50708 * 109.46824 * 180.02562 * 16 15 14 18 18 O 1.21285 * 119.99712 * 0.02562 * 17 16 15 19 19 N 1.34774 * 119.99574 * 180.02562 * 17 16 15 20 20 C 1.37102 * 119.99649 * 179.97438 * 19 17 16 21 21 H 1.07996 * 120.00012 * 0.02562 * 20 19 17 22 22 C 1.38948 * 119.99963 * 180.02562 * 20 19 17 23 23 N 1.31414 * 119.99917 * 180.02562 * 22 20 19 24 24 Si 1.86798 * 119.99989 * 0.02562 * 22 20 19 25 25 H 1.48494 * 109.47308 * 89.99900 * 24 22 20 26 26 H 1.48505 * 109.47035 * 210.00229 * 24 22 20 27 27 H 1.48504 * 109.47281 * 330.00033 * 24 22 20 28 28 C 1.37961 * 119.92602 * 180.26722 * 2 1 3 29 29 H 1.08999 * 109.47015 * 89.99184 * 1 2 3 30 30 H 1.08995 * 109.47237 * 209.99697 * 1 2 3 31 31 H 1.09006 * 109.46642 * 329.99615 * 1 2 3 32 32 H 1.07993 * 119.85533 * 359.97438 * 3 2 1 33 33 H 1.08998 * 109.46903 * 269.97177 * 5 4 3 34 34 H 1.08999 * 109.47206 * 29.98108 * 5 4 3 35 35 H 1.08997 * 109.46792 * 149.97606 * 5 4 3 36 36 H 1.07999 * 120.07236 * 180.02562 * 6 4 3 37 37 H 0.96997 * 119.99865 * 0.02562 * 10 8 7 38 38 H 1.08998 * 109.47066 * 59.99906 * 11 10 8 39 39 H 1.09001 * 109.47002 * 300.00046 * 11 10 8 40 40 H 1.08002 * 119.99761 * 304.99301 * 12 11 10 41 41 H 1.08002 * 120.00350 * 359.72370 * 13 12 11 42 42 H 1.08998 * 109.47600 * 245.00508 * 14 13 12 43 43 H 1.09004 * 109.46937 * 5.00335 * 14 13 12 44 44 H 1.00899 * 110.99557 * 56.04877 * 15 14 13 45 45 H 1.08994 * 109.47121 * 300.00035 * 16 15 14 46 46 H 1.09002 * 109.47039 * 60.00329 * 16 15 14 47 47 H 0.96999 * 120.00487 * 0.02562 * 19 17 16 48 48 H 0.97003 * 119.99669 * 179.97438 * 23 22 20 49 49 H 1.08004 * 120.07464 * 0.02562 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1973 1.1991 0.0000 4 6 3.5809 1.2079 -0.0005 5 6 4.3244 2.5187 0.0001 6 6 4.2812 0.0193 -0.0005 7 6 3.5910 -1.1939 -0.0005 8 6 4.3350 -2.4714 -0.0011 9 8 5.5506 -2.4668 -0.0011 10 7 3.6656 -3.6412 -0.0016 11 6 4.4030 -4.9072 -0.0016 12 6 3.4280 -6.0563 -0.0029 13 6 3.5045 -6.9791 -0.9294 14 6 2.5336 -8.1316 -0.9271 15 7 1.8571 -8.2047 -2.2290 16 6 0.9003 -9.3188 -2.2634 17 6 0.2279 -9.3622 -3.6114 18 8 0.5177 -8.5456 -4.4601 19 7 -0.6953 -10.3083 -3.8738 20 6 -1.3073 -10.3474 -5.1000 21 1 -1.0493 -9.6204 -5.8557 22 6 -2.2595 -11.3225 -5.3704 23 7 -2.8458 -11.3603 -6.5459 24 14 -2.7063 -12.5797 -4.0630 25 1 -3.8304 -12.0622 -3.2423 26 1 -3.1138 -13.8496 -4.7161 27 1 -1.5297 -12.8268 -3.1912 28 6 2.1953 -1.1957 -0.0056 29 1 -0.3633 0.0001 -1.0277 30 1 -0.3633 -0.8900 0.5138 31 1 -0.3633 0.8900 0.5139 32 1 1.6538 2.1323 -0.0004 33 1 4.5037 2.8352 -1.0275 34 1 3.7296 3.2736 0.5143 35 1 5.2778 2.3954 0.5138 36 1 5.3612 0.0275 -0.0005 37 1 2.6957 -3.6449 -0.0020 38 1 5.0295 -4.9627 0.8885 39 1 5.0302 -4.9623 -0.8914 40 1 2.6690 -6.1213 0.7627 41 1 4.2635 -6.9141 -1.6950 42 1 3.0732 -9.0611 -0.7453 43 1 1.7934 -7.9816 -0.1410 44 1 2.5263 -8.2790 -2.9805 45 1 1.4283 -10.2566 -2.0908 46 1 0.1489 -9.1766 -1.4866 47 1 -0.9273 -10.9611 -3.1949 48 1 -3.5103 -12.0413 -6.7348 49 1 1.6553 -2.1310 -0.0104 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001732932520.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:41:27 Heat of formation + Delta-G solvation = -35.370247 kcal Electronic energy + Delta-G solvation = -27563.190704 eV Core-core repulsion = 23490.121634 eV Total energy + Delta-G solvation = -4073.069070 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.60212 -38.99698 -38.53897 -36.82935 -35.36424 -34.08371 -33.91466 -33.15380 -32.25988 -31.66917 -28.75691 -27.77992 -27.06180 -26.31929 -24.52505 -23.54902 -22.46924 -21.08541 -20.76287 -19.93413 -19.33185 -18.33624 -17.81189 -16.72726 -16.43455 -16.23153 -15.71091 -15.47076 -15.41409 -15.03784 -14.76609 -14.51755 -14.32803 -14.11913 -13.90765 -13.71416 -13.60596 -13.57250 -13.32286 -13.12974 -12.93958 -12.66516 -12.47887 -12.36570 -12.17483 -11.95623 -11.88802 -11.83394 -11.75406 -11.46109 -11.26524 -11.18283 -10.61697 -10.32919 -9.99673 -9.67009 -9.59503 -9.35087 -9.12258 -9.00852 -8.62590 -8.21825 -8.16552 -6.33028 -3.84652 0.49081 0.93350 1.76869 2.53963 3.00327 3.02981 3.04954 3.13260 3.46947 3.71349 4.07582 4.13388 4.27925 4.32462 4.32903 4.54704 4.70754 4.78953 4.83801 4.87079 4.89963 5.02483 5.11241 5.17256 5.19230 5.21317 5.25424 5.28498 5.33160 5.39252 5.42517 5.45538 5.59499 5.60177 5.62584 5.73805 5.76080 5.89836 5.91537 6.05505 6.06787 6.13467 6.36477 6.50322 6.51717 7.01366 7.19561 7.50094 7.56140 7.90440 8.12351 8.57586 8.92882 9.40205 9.80233 10.80059 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.013718 B = 0.001543 C = 0.001438 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2040.576069 B =18147.671330 C =19466.646283 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.088 4.088 3 C -0.097 4.097 4 C -0.091 4.091 5 C -0.115 4.115 6 C -0.067 4.067 7 C -0.126 4.126 8 C 0.558 3.442 9 O -0.540 6.540 10 N -0.720 5.720 11 C 0.153 3.847 12 C -0.183 4.183 13 C -0.110 4.110 14 C 0.082 3.918 15 N -0.665 5.665 16 C 0.048 3.952 17 C 0.449 3.551 18 O -0.564 6.564 19 N -0.590 5.590 20 C -0.306 4.306 21 H 0.120 0.880 22 C 0.042 3.958 23 N -0.881 5.881 24 Si 0.880 3.120 25 H -0.271 1.271 26 H -0.276 1.276 27 H -0.270 1.270 28 C -0.092 4.092 29 H 0.075 0.925 30 H 0.070 0.930 31 H 0.068 0.932 32 H 0.126 0.874 33 H 0.073 0.927 34 H 0.068 0.932 35 H 0.069 0.931 36 H 0.135 0.865 37 H 0.403 0.597 38 H 0.075 0.925 39 H 0.073 0.927 40 H 0.117 0.883 41 H 0.114 0.886 42 H 0.040 0.960 43 H 0.077 0.923 44 H 0.352 0.648 45 H 0.045 0.955 46 H 0.088 0.912 47 H 0.371 0.629 48 H 0.273 0.727 49 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.027 20.676 20.219 30.950 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.088 4.088 3 C -0.115 4.115 4 C -0.091 4.091 5 C -0.171 4.171 6 C -0.086 4.086 7 C -0.129 4.129 8 C 0.346 3.654 9 O -0.418 6.418 10 N -0.372 5.372 11 C 0.030 3.970 12 C -0.203 4.203 13 C -0.130 4.130 14 C -0.047 4.047 15 N -0.298 5.298 16 C -0.085 4.085 17 C 0.235 3.765 18 O -0.446 6.446 19 N -0.230 5.230 20 C -0.435 4.435 21 H 0.137 0.863 22 C -0.161 4.161 23 N -0.521 5.521 24 Si 0.707 3.293 25 H -0.196 1.196 26 H -0.202 1.202 27 H -0.195 1.195 28 C -0.111 4.111 29 H 0.093 0.907 30 H 0.089 0.911 31 H 0.087 0.913 32 H 0.144 0.856 33 H 0.091 0.909 34 H 0.087 0.913 35 H 0.088 0.912 36 H 0.153 0.847 37 H 0.239 0.761 38 H 0.093 0.907 39 H 0.091 0.909 40 H 0.135 0.865 41 H 0.132 0.868 42 H 0.058 0.942 43 H 0.095 0.905 44 H 0.172 0.828 45 H 0.063 0.937 46 H 0.106 0.894 47 H 0.203 0.797 48 H 0.084 0.916 49 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 11.465 21.557 19.645 31.338 hybrid contribution -0.458 -2.038 0.833 2.249 sum 11.006 19.519 20.478 30.356 Atomic orbital electron populations 1.20833 0.90468 1.03128 1.02916 1.19869 0.96501 0.92712 0.99698 1.21146 0.93536 0.97805 0.99021 1.19896 0.93781 0.95389 1.00070 1.20806 1.00103 0.93526 1.02690 1.21132 1.00615 0.90352 0.96512 1.19885 0.93585 0.93471 1.05974 1.18292 0.87203 0.83702 0.76208 1.90773 1.13444 1.87639 1.49916 1.45925 1.10739 1.05366 1.75199 1.20334 0.93346 0.80600 1.02684 1.22731 1.00895 0.95897 1.00755 1.22876 0.97665 0.95513 0.96914 1.21090 0.94968 0.95445 0.93154 1.60108 1.20661 1.45346 1.03681 1.21725 0.96354 0.92460 0.97983 1.19691 0.83660 0.84087 0.89078 1.90569 1.65330 1.40589 1.48110 1.42202 1.37350 1.28460 1.14949 1.19439 1.18200 1.15480 0.90361 0.86277 1.25040 0.96680 0.97786 0.96624 1.69625 1.26790 1.34854 1.20798 0.86664 0.79150 0.81856 0.81650 1.19594 1.20170 1.19550 1.21203 0.92796 0.98225 0.98840 0.90662 0.91147 0.91331 0.85586 0.90862 0.91337 0.91230 0.84720 0.76110 0.90666 0.90871 0.86525 0.86826 0.94225 0.90468 0.82822 0.93667 0.89419 0.79680 0.91598 0.85512 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.64 10.01 36.01 0.36 -0.28 16 2 C -0.09 -0.66 5.87 -104.68 -0.61 -1.27 16 3 C -0.10 -0.69 9.34 -39.49 -0.37 -1.06 16 4 C -0.09 -0.71 5.87 -104.68 -0.61 -1.32 16 5 C -0.11 -0.60 10.01 36.01 0.36 -0.24 16 6 C -0.07 -0.64 9.24 -39.18 -0.36 -1.00 16 7 C -0.13 -1.26 5.87 -104.97 -0.62 -1.88 16 8 C 0.56 6.46 7.77 -12.33 -0.10 6.36 16 9 O -0.54 -7.98 16.35 5.31 0.09 -7.89 16 10 N -0.72 -6.75 5.50 -62.43 -0.34 -7.09 16 11 C 0.15 1.41 6.11 -5.19 -0.03 1.38 16 12 C -0.18 -1.56 9.24 -36.02 -0.33 -1.89 16 13 C -0.11 -1.07 9.38 -36.02 -0.34 -1.40 16 14 C 0.08 0.88 6.12 -4.97 -0.03 0.85 16 15 N -0.67 -9.91 6.11 -116.33 -0.71 -10.62 16 16 C 0.05 0.76 6.17 -4.97 -0.03 0.73 16 17 C 0.45 10.08 7.82 -10.98 -0.09 9.99 16 18 O -0.56 -15.10 15.78 5.55 0.09 -15.01 16 19 N -0.59 -13.91 5.09 -10.96 -0.06 -13.97 16 20 C -0.31 -8.63 10.16 -14.93 -0.15 -8.78 16 21 H 0.12 3.85 7.39 -52.49 -0.39 3.46 16 22 C 0.04 1.14 5.50 -17.47 -0.10 1.04 16 23 N -0.88 -25.60 13.96 55.50 0.77 -24.83 16 24 Si 0.88 19.15 27.74 -169.99 -4.71 14.43 16 25 H -0.27 -5.76 7.11 56.52 0.40 -5.36 16 26 H -0.28 -6.04 7.11 56.52 0.40 -5.63 16 27 H -0.27 -5.33 6.52 56.52 0.37 -4.96 16 28 C -0.09 -0.76 9.19 -39.19 -0.36 -1.12 16 29 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.07 0.35 8.08 -51.93 -0.42 -0.07 16 31 H 0.07 0.30 8.08 -51.93 -0.42 -0.12 16 32 H 0.13 0.63 8.06 -52.49 -0.42 0.21 16 33 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 34 H 0.07 0.28 8.08 -51.93 -0.42 -0.14 16 35 H 0.07 0.34 8.08 -51.93 -0.42 -0.08 16 36 H 0.13 1.29 7.65 -52.49 -0.40 0.89 16 37 H 0.40 2.99 6.50 -40.82 -0.27 2.73 16 38 H 0.08 0.69 8.14 -51.93 -0.42 0.26 16 39 H 0.07 0.74 7.79 -51.93 -0.40 0.34 16 40 H 0.12 0.86 7.84 -52.49 -0.41 0.45 16 41 H 0.11 1.08 7.84 -52.49 -0.41 0.67 16 42 H 0.04 0.39 8.14 -51.93 -0.42 -0.04 16 43 H 0.08 0.76 7.79 -51.93 -0.40 0.36 16 44 H 0.35 5.47 8.42 -39.29 -0.33 5.14 16 45 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 46 H 0.09 1.24 8.14 -51.93 -0.42 0.82 16 47 H 0.37 7.61 5.76 -40.82 -0.24 7.38 16 48 H 0.27 7.33 8.31 -40.82 -0.34 6.99 16 49 H 0.13 0.81 6.41 -52.48 -0.34 0.47 16 LS Contribution 415.89 15.07 6.27 6.27 Total: -1.00 -35.32 415.89 -9.41 -44.74 By element: Atomic # 1 Polarization: 21.26 SS G_CDS: -7.40 Total: 13.86 kcal Atomic # 6 Polarization: 3.52 SS G_CDS: -3.41 Total: 0.11 kcal Atomic # 7 Polarization: -56.17 SS G_CDS: -0.34 Total: -56.51 kcal Atomic # 8 Polarization: -23.07 SS G_CDS: 0.17 Total: -22.90 kcal Atomic # 14 Polarization: 19.15 SS G_CDS: -4.71 Total: 14.43 kcal Total LS contribution 6.27 Total: 6.27 kcal Total: -35.32 -9.41 -44.74 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732932520.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.368 kcal (2) G-P(sol) polarization free energy of solvation -35.323 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.956 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.415 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.738 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.370 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds