Wall clock time and date at job start Wed Apr 1 2020 03:57:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50711 * 1 3 3 C 1.38145 * 119.54889 * 2 1 4 4 C 1.39826 * 118.99609 * 179.97438 * 3 2 1 5 5 C 1.48145 * 120.92027 * 179.97438 * 4 3 2 6 6 O 1.21517 * 119.99952 * 40.95544 * 5 4 3 7 7 N 1.34781 * 120.00268 * 220.96056 * 5 4 3 8 8 C 1.46989 * 120.71661 * 5.91423 * 7 5 4 9 9 C 1.53154 * 108.43744 * 125.45646 * 8 7 5 10 10 C 1.52511 * 109.79574 * 54.53354 * 9 8 7 11 11 H 1.09005 * 108.40219 * 180.65987 * 10 9 8 12 12 O 1.42689 * 110.61948 * 61.28696 * 10 9 8 13 13 C 1.43080 * 113.87090 * 174.65078 * 12 10 9 14 14 C 1.52774 * 109.52506 * 61.50112 * 13 12 10 15 15 N 1.47171 * 108.94249 * 308.68114 * 14 13 12 16 16 C 1.36943 * 121.21934 * 230.87870 * 15 14 13 17 17 H 1.07998 * 120.00112 * 149.87287 * 16 15 14 18 18 C 1.38809 * 120.00070 * 329.87256 * 16 15 14 19 19 N 1.31619 * 120.00201 * 349.61370 * 18 16 15 20 20 Si 1.86801 * 120.00090 * 169.61779 * 18 16 15 21 21 H 1.48499 * 109.46822 * 269.99644 * 20 18 16 22 22 H 1.48496 * 109.47068 * 29.99721 * 20 18 16 23 23 H 1.48507 * 109.46989 * 149.99980 * 20 18 16 24 24 C 1.47594 * 117.55724 * 50.60977 * 15 14 13 25 25 H 1.08999 * 110.31269 * 187.97498 * 24 15 14 26 26 C 1.47222 * 119.88384 * 185.29307 * 7 5 4 27 27 C 1.39811 * 118.15514 * 0.25625 * 4 3 2 28 28 C 1.38149 * 119.00099 * 359.51999 * 27 4 3 29 29 C 1.50707 * 119.55249 * 180.23366 * 28 27 4 30 30 N 1.31802 * 120.89864 * 0.48863 * 28 27 4 31 31 H 1.09003 * 109.46718 * 89.99977 * 1 2 3 32 32 H 1.08991 * 109.47185 * 209.99846 * 1 2 3 33 33 H 1.08999 * 109.46831 * 330.00214 * 1 2 3 34 34 H 1.07998 * 120.50618 * 359.97438 * 3 2 1 35 35 H 1.09003 * 109.64549 * 5.77180 * 8 7 5 36 36 H 1.08996 * 109.81576 * 245.24376 * 8 7 5 37 37 H 1.08996 * 109.41991 * 294.43400 * 9 8 7 38 38 H 1.09002 * 109.36529 * 174.59855 * 9 8 7 39 39 H 1.08993 * 109.47407 * 181.64115 * 13 12 10 40 40 H 1.09002 * 109.46813 * 301.65174 * 13 12 10 41 41 H 1.08997 * 109.52282 * 188.80974 * 14 13 12 42 42 H 1.08999 * 109.42887 * 68.48804 * 14 13 12 43 43 H 0.97000 * 120.00861 * 180.02562 * 19 18 16 44 44 H 1.09005 * 108.76083 * 113.93584 * 26 7 5 45 45 H 1.08998 * 110.51518 * 353.61597 * 26 7 5 46 46 H 1.08003 * 120.49813 * 179.72746 * 27 4 3 47 47 H 1.09002 * 109.46734 * 270.26151 * 29 28 27 48 48 H 1.08998 * 109.46725 * 30.25138 * 29 28 27 49 49 H 1.08996 * 109.47387 * 150.25698 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1884 1.2018 0.0000 4 6 3.5866 1.1883 0.0005 5 6 4.3601 2.4518 0.0000 6 8 3.9992 3.3854 0.6890 7 7 5.4640 2.5659 -0.7648 8 6 5.8428 1.4975 -1.7005 9 6 5.9996 2.1088 -3.0960 10 6 6.9836 3.2728 -3.0424 11 1 7.0690 3.6976 -4.0426 12 8 8.2701 2.8241 -2.6187 13 6 9.2793 3.8375 -2.6595 14 6 8.8978 4.9763 -1.7152 15 7 7.5211 5.4029 -2.0128 16 6 7.2163 6.7214 -2.2224 17 1 6.4029 6.9896 -2.8803 18 6 7.9527 7.7132 -1.5893 19 7 8.8033 7.3946 -0.6367 20 14 7.7364 9.5001 -2.0890 21 1 8.6936 9.8295 -3.1755 22 1 6.3481 9.7149 -2.5703 23 1 7.9957 10.3763 -0.9184 24 6 6.4822 4.3569 -2.0832 25 1 5.5447 4.7785 -2.4457 26 6 6.2957 3.7774 -0.6761 27 6 4.2344 -0.0507 -0.0044 28 6 3.4740 -1.2041 0.0004 29 6 4.1594 -2.5463 0.0005 30 7 2.1572 -1.1467 0.0000 31 1 -0.3633 0.0000 -1.0277 32 1 -0.3633 -0.8899 0.5138 33 1 -0.3633 0.8900 0.5138 34 1 1.6493 2.1376 -0.0004 35 1 5.0646 0.7345 -1.7201 36 1 6.7865 1.0503 -1.3883 37 1 5.0316 2.4685 -3.4449 38 1 6.3733 1.3498 -3.7832 39 1 10.2342 3.4121 -2.3510 40 1 9.3647 4.2244 -3.6750 41 1 9.5798 5.8140 -1.8605 42 1 8.9577 4.6277 -0.6841 43 1 9.3176 8.0876 -0.1939 44 1 7.2670 3.5063 -0.2623 45 1 5.8208 4.5209 -0.0361 46 1 5.3130 -0.1052 -0.0086 47 1 4.3251 -2.8696 -1.0272 48 1 5.1171 -2.4651 0.5147 49 1 3.5319 -3.2747 0.5139 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001074256607.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:57:51 Heat of formation + Delta-G solvation = -10.492292 kcal Electronic energy + Delta-G solvation = -31547.848764 eV Core-core repulsion = 27475.858483 eV Total energy + Delta-G solvation = -4071.990281 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -40.99002 -39.75800 -38.47048 -35.87560 -34.69082 -33.98045 -33.17482 -31.68034 -31.49443 -29.57145 -29.32206 -27.56985 -26.93441 -25.58290 -24.01333 -23.30746 -22.68187 -22.07231 -21.44579 -19.51303 -18.41479 -17.37252 -16.94533 -16.65383 -16.21610 -15.73160 -15.44730 -15.29057 -15.07282 -14.86853 -14.55091 -14.44697 -14.09467 -13.67910 -13.52386 -13.51036 -13.38113 -13.17563 -12.74890 -12.69194 -12.43317 -12.42591 -12.35047 -12.10366 -12.03936 -11.81174 -11.38744 -11.08421 -11.01925 -10.83018 -10.65988 -10.26616 -10.25132 -10.21059 -10.04944 -9.88159 -9.67473 -9.41542 -9.02523 -8.94819 -8.65047 -8.34073 -6.76067 -5.89447 -3.39184 0.71893 0.86545 2.80091 3.08238 3.32073 3.38935 3.40290 3.55870 3.93356 4.23639 4.31856 4.37546 4.47723 4.77400 4.83632 4.92073 5.06504 5.13582 5.24041 5.26929 5.28032 5.30164 5.31942 5.38411 5.39120 5.42136 5.56876 5.68061 5.70195 5.73256 5.81949 5.86091 5.89621 5.95775 6.01262 6.04308 6.11172 6.25534 6.32779 6.38861 6.44706 6.58323 6.69771 6.85823 7.05633 7.46306 7.58748 7.67270 7.76380 7.84406 8.24801 8.30662 9.05871 9.65337 10.24097 11.17782 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.016513 B = 0.003049 C = 0.002744 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1695.270040 B = 9180.925628 C =10201.185912 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C 0.129 3.871 3 C -0.131 4.131 4 C -0.065 4.065 5 C 0.550 3.450 6 O -0.529 6.529 7 N -0.596 5.596 8 C 0.105 3.895 9 C -0.124 4.124 10 C 0.082 3.918 11 H 0.053 0.947 12 O -0.387 6.387 13 C 0.039 3.961 14 C 0.138 3.862 15 N -0.584 5.584 16 C -0.257 4.257 17 H 0.068 0.932 18 C 0.009 3.991 19 N -0.901 5.901 20 Si 0.908 3.092 21 H -0.286 1.286 22 H -0.278 1.278 23 H -0.289 1.289 24 C 0.134 3.866 25 H 0.074 0.926 26 C 0.107 3.893 27 C -0.152 4.152 28 C 0.128 3.872 29 C -0.103 4.103 30 N -0.476 5.476 31 H 0.079 0.921 32 H 0.078 0.922 33 H 0.077 0.923 34 H 0.143 0.857 35 H 0.084 0.916 36 H 0.079 0.921 37 H 0.077 0.923 38 H 0.079 0.921 39 H 0.081 0.919 40 H 0.040 0.960 41 H 0.096 0.904 42 H 0.028 0.972 43 H 0.256 0.744 44 H 0.070 0.930 45 H 0.094 0.906 46 H 0.144 0.856 47 H 0.080 0.920 48 H 0.076 0.924 49 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.413 -18.370 -2.429 20.351 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.009 4.009 3 C -0.151 4.151 4 C -0.076 4.076 5 C 0.337 3.663 6 O -0.406 6.406 7 N -0.328 5.328 8 C -0.018 4.018 9 C -0.162 4.162 10 C 0.022 3.978 11 H 0.071 0.929 12 O -0.307 6.307 13 C -0.039 4.039 14 C 0.013 3.987 15 N -0.306 5.306 16 C -0.386 4.386 17 H 0.085 0.915 18 C -0.191 4.191 19 N -0.545 5.545 20 Si 0.738 3.262 21 H -0.213 1.213 22 H -0.203 1.203 23 H -0.215 1.215 24 C 0.025 3.975 25 H 0.092 0.908 26 C -0.015 4.015 27 C -0.172 4.172 28 C -0.010 4.010 29 C -0.160 4.160 30 N -0.188 5.188 31 H 0.098 0.902 32 H 0.097 0.903 33 H 0.096 0.904 34 H 0.160 0.840 35 H 0.102 0.898 36 H 0.097 0.903 37 H 0.095 0.905 38 H 0.097 0.903 39 H 0.099 0.901 40 H 0.058 0.942 41 H 0.114 0.886 42 H 0.046 0.954 43 H 0.066 0.934 44 H 0.088 0.912 45 H 0.112 0.888 46 H 0.161 0.839 47 H 0.098 0.902 48 H 0.095 0.905 49 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -8.876 -18.632 -1.903 20.726 hybrid contribution 0.575 2.130 -0.256 2.221 sum -8.301 -16.502 -2.159 18.598 Atomic orbital electron populations 1.20722 0.88348 1.03669 1.03256 1.21222 0.97123 0.87677 0.94835 1.22032 0.93119 0.99960 1.00012 1.20453 0.94454 0.94017 0.98700 1.18288 0.80627 0.86661 0.80767 1.90808 1.68133 1.39310 1.42367 1.48357 1.24982 1.20342 1.39163 1.21966 1.01217 0.89595 0.88981 1.21823 0.99126 0.98352 0.96916 1.22191 0.84132 0.93911 0.97526 0.92936 1.87711 1.17915 1.36838 1.88214 1.23272 0.89970 0.90581 1.00054 1.21377 0.87508 0.95168 0.94670 1.44232 1.01337 1.02275 1.82805 1.19162 1.17025 0.80995 1.21459 0.91464 1.25183 0.99740 0.98404 0.95740 1.69958 1.28083 1.32361 1.24077 0.86201 0.78054 0.84433 0.77527 1.21326 1.20304 1.21532 1.21599 0.93703 0.89669 0.92495 0.90818 1.22491 0.93738 0.84737 1.00568 1.22240 1.01749 0.91729 1.01471 1.21210 0.89184 0.95620 0.94975 1.20726 0.99880 0.92125 1.03304 1.67209 1.09633 1.29497 1.12455 0.90231 0.90344 0.90440 0.83966 0.89760 0.90281 0.90485 0.90264 0.90082 0.94156 0.88572 0.95355 0.93358 0.91154 0.88805 0.83876 0.90165 0.90481 0.90367 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.81 10.17 36.01 0.37 -0.45 16 2 C 0.13 1.46 6.78 -82.63 -0.56 0.90 16 3 C -0.13 -1.64 9.41 -39.02 -0.37 -2.01 16 4 C -0.07 -0.90 5.13 -104.65 -0.54 -1.43 16 5 C 0.55 9.41 7.36 -12.19 -0.09 9.32 16 6 O -0.53 -11.16 16.35 5.35 0.09 -11.07 16 7 N -0.60 -9.78 2.98 -173.43 -0.52 -10.30 16 8 C 0.11 1.35 4.85 -3.70 -0.02 1.33 16 9 C -0.12 -1.63 5.82 -26.90 -0.16 -1.79 16 10 C 0.08 1.41 2.72 -26.88 -0.07 1.33 16 11 H 0.05 0.94 8.13 -51.93 -0.42 0.51 16 12 O -0.39 -6.96 9.68 -35.23 -0.34 -7.30 16 13 C 0.04 0.73 6.96 37.04 0.26 0.98 16 14 C 0.14 3.15 4.87 -3.79 -0.02 3.13 16 15 N -0.58 -14.06 2.70 -164.15 -0.44 -14.50 16 16 C -0.26 -6.85 9.69 -15.06 -0.15 -7.00 16 17 H 0.07 1.78 7.85 -52.49 -0.41 1.36 16 18 C 0.01 0.24 5.08 -17.43 -0.09 0.15 16 19 N -0.90 -25.33 11.04 55.49 0.61 -24.72 16 20 Si 0.91 21.36 29.57 -169.99 -5.03 16.33 16 21 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 22 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 23 H -0.29 -6.91 7.11 56.52 0.40 -6.50 16 24 C 0.13 2.74 2.95 -67.07 -0.20 2.54 16 25 H 0.07 1.56 7.99 -51.93 -0.42 1.15 16 26 C 0.11 2.16 5.68 -3.49 -0.02 2.15 16 27 C -0.15 -1.73 7.13 -39.03 -0.28 -2.01 16 28 C 0.13 1.37 6.78 -82.63 -0.56 0.81 16 29 C -0.10 -0.75 10.16 36.01 0.37 -0.39 16 30 N -0.48 -5.63 10.16 -5.79 -0.06 -5.69 16 31 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.08 0.59 8.14 -51.93 -0.42 0.16 16 33 H 0.08 0.52 8.08 -51.93 -0.42 0.10 16 34 H 0.14 1.71 8.06 -52.49 -0.42 1.29 16 35 H 0.08 0.92 4.74 -51.93 -0.25 0.67 16 36 H 0.08 1.00 7.95 -51.93 -0.41 0.59 16 37 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 38 H 0.08 0.89 8.14 -51.93 -0.42 0.46 16 39 H 0.08 1.32 8.14 -51.93 -0.42 0.90 16 40 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 41 H 0.10 2.43 6.22 -51.93 -0.32 2.11 16 42 H 0.03 0.69 7.21 -51.93 -0.37 0.32 16 43 H 0.26 7.00 8.31 -40.82 -0.34 6.66 16 44 H 0.07 1.50 6.69 -51.93 -0.35 1.15 16 45 H 0.09 2.20 7.00 -51.93 -0.36 1.84 16 46 H 0.14 1.42 6.73 -52.48 -0.35 1.07 16 47 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 48 H 0.08 0.46 8.08 -51.93 -0.42 0.04 16 49 H 0.08 0.56 8.14 -51.93 -0.42 0.13 16 LS Contribution 383.51 15.07 5.78 5.78 Total: -1.00 -31.66 383.51 -9.48 -41.14 By element: Atomic # 1 Polarization: 10.20 SS G_CDS: -7.45 Total: 2.75 kcal Atomic # 6 Polarization: 9.70 SS G_CDS: -2.12 Total: 7.58 kcal Atomic # 7 Polarization: -54.80 SS G_CDS: -0.41 Total: -55.21 kcal Atomic # 8 Polarization: -18.11 SS G_CDS: -0.25 Total: -18.37 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.03 Total: 16.33 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -31.66 -9.48 -41.14 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001074256607.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.643 kcal (2) G-P(sol) polarization free energy of solvation -31.660 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.016 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.476 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.136 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.492 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds