Wall clock time and date at job start Wed Apr 1 2020 03:57:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50711 * 1 3 3 C 1.38145 * 119.54889 * 2 1 4 4 C 1.39826 * 118.99609 * 179.97438 * 3 2 1 5 5 C 1.48145 * 120.92027 * 179.97438 * 4 3 2 6 6 O 1.21517 * 119.99952 * 40.95544 * 5 4 3 7 7 N 1.34781 * 120.00268 * 220.96056 * 5 4 3 8 8 C 1.46989 * 120.71661 * 5.91423 * 7 5 4 9 9 C 1.53154 * 108.43744 * 125.45646 * 8 7 5 10 10 C 1.52511 * 109.79574 * 54.53354 * 9 8 7 11 11 H 1.09005 * 108.40219 * 180.65987 * 10 9 8 12 12 O 1.42689 * 110.61948 * 61.28696 * 10 9 8 13 13 C 1.43080 * 113.87090 * 174.65078 * 12 10 9 14 14 C 1.52774 * 109.52506 * 61.50112 * 13 12 10 15 15 N 1.47171 * 108.94249 * 308.68114 * 14 13 12 16 16 C 1.36943 * 121.21934 * 230.87870 * 15 14 13 17 17 H 1.07998 * 120.00112 * 149.87287 * 16 15 14 18 18 C 1.38809 * 120.00070 * 329.87256 * 16 15 14 19 19 N 1.31619 * 120.00201 * 349.61370 * 18 16 15 20 20 Si 1.86801 * 120.00090 * 169.61779 * 18 16 15 21 21 H 1.48499 * 109.46822 * 269.99644 * 20 18 16 22 22 H 1.48496 * 109.47068 * 29.99721 * 20 18 16 23 23 H 1.48507 * 109.46989 * 149.99980 * 20 18 16 24 24 C 1.47594 * 117.55724 * 50.60977 * 15 14 13 25 25 H 1.08999 * 110.31269 * 187.97498 * 24 15 14 26 26 C 1.47222 * 119.88384 * 185.29307 * 7 5 4 27 27 C 1.39811 * 118.15514 * 0.25625 * 4 3 2 28 28 C 1.38149 * 119.00099 * 359.51999 * 27 4 3 29 29 C 1.50707 * 119.55249 * 180.23366 * 28 27 4 30 30 N 1.31802 * 120.89864 * 0.48863 * 28 27 4 31 31 H 1.09003 * 109.46718 * 89.99977 * 1 2 3 32 32 H 1.08991 * 109.47185 * 209.99846 * 1 2 3 33 33 H 1.08999 * 109.46831 * 330.00214 * 1 2 3 34 34 H 1.07998 * 120.50618 * 359.97438 * 3 2 1 35 35 H 1.09003 * 109.64549 * 5.77180 * 8 7 5 36 36 H 1.08996 * 109.81576 * 245.24376 * 8 7 5 37 37 H 1.08996 * 109.41991 * 294.43400 * 9 8 7 38 38 H 1.09002 * 109.36529 * 174.59855 * 9 8 7 39 39 H 1.08993 * 109.47407 * 181.64115 * 13 12 10 40 40 H 1.09002 * 109.46813 * 301.65174 * 13 12 10 41 41 H 1.08997 * 109.52282 * 188.80974 * 14 13 12 42 42 H 1.08999 * 109.42887 * 68.48804 * 14 13 12 43 43 H 0.97000 * 120.00861 * 180.02562 * 19 18 16 44 44 H 1.09005 * 108.76083 * 113.93584 * 26 7 5 45 45 H 1.08998 * 110.51518 * 353.61597 * 26 7 5 46 46 H 1.08003 * 120.49813 * 179.72746 * 27 4 3 47 47 H 1.09002 * 109.46734 * 270.26151 * 29 28 27 48 48 H 1.08998 * 109.46725 * 30.25138 * 29 28 27 49 49 H 1.08996 * 109.47387 * 150.25698 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1884 1.2018 0.0000 4 6 3.5866 1.1883 0.0005 5 6 4.3601 2.4518 0.0000 6 8 3.9992 3.3854 0.6890 7 7 5.4640 2.5659 -0.7648 8 6 5.8428 1.4975 -1.7005 9 6 5.9996 2.1088 -3.0960 10 6 6.9836 3.2728 -3.0424 11 1 7.0690 3.6976 -4.0426 12 8 8.2701 2.8241 -2.6187 13 6 9.2793 3.8375 -2.6595 14 6 8.8978 4.9763 -1.7152 15 7 7.5211 5.4029 -2.0128 16 6 7.2163 6.7214 -2.2224 17 1 6.4029 6.9896 -2.8803 18 6 7.9527 7.7132 -1.5893 19 7 8.8033 7.3946 -0.6367 20 14 7.7364 9.5001 -2.0890 21 1 8.6936 9.8295 -3.1755 22 1 6.3481 9.7149 -2.5703 23 1 7.9957 10.3763 -0.9184 24 6 6.4822 4.3569 -2.0832 25 1 5.5447 4.7785 -2.4457 26 6 6.2957 3.7774 -0.6761 27 6 4.2344 -0.0507 -0.0044 28 6 3.4740 -1.2041 0.0004 29 6 4.1594 -2.5463 0.0005 30 7 2.1572 -1.1467 0.0000 31 1 -0.3633 0.0000 -1.0277 32 1 -0.3633 -0.8899 0.5138 33 1 -0.3633 0.8900 0.5138 34 1 1.6493 2.1376 -0.0004 35 1 5.0646 0.7345 -1.7201 36 1 6.7865 1.0503 -1.3883 37 1 5.0316 2.4685 -3.4449 38 1 6.3733 1.3498 -3.7832 39 1 10.2342 3.4121 -2.3510 40 1 9.3647 4.2244 -3.6750 41 1 9.5798 5.8140 -1.8605 42 1 8.9577 4.6277 -0.6841 43 1 9.3176 8.0876 -0.1939 44 1 7.2670 3.5063 -0.2623 45 1 5.8208 4.5209 -0.0361 46 1 5.3130 -0.1052 -0.0086 47 1 4.3251 -2.8696 -1.0272 48 1 5.1171 -2.4651 0.5147 49 1 3.5319 -3.2747 0.5139 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001074256607.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:57:50 Heat of formation + Delta-G solvation = -30.622228 kcal Electronic energy + Delta-G solvation = -31548.721664 eV Core-core repulsion = 27475.858483 eV Total energy + Delta-G solvation = -4072.863181 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -42.10650 -41.02719 -39.89788 -37.30071 -36.46961 -34.77950 -34.29423 -33.33730 -33.01235 -31.09649 -29.98030 -29.32607 -27.75981 -26.95421 -25.68040 -24.71736 -24.09374 -22.99664 -22.81714 -20.91364 -19.83914 -18.94591 -18.46666 -17.74102 -17.32055 -17.13194 -17.00366 -16.75416 -16.48810 -16.15792 -15.84237 -15.59379 -15.48275 -15.15921 -14.88687 -14.67392 -14.39579 -14.23165 -14.07157 -13.99747 -13.85803 -13.44111 -13.22083 -13.03931 -12.93264 -12.91486 -12.80181 -12.69951 -12.65260 -12.46738 -12.29573 -12.13092 -11.93171 -11.77583 -11.42501 -11.26483 -10.84254 -10.75548 -10.57659 -10.46603 -9.82342 -9.77985 -8.70169 -7.94760 -5.47815 -0.28901 0.00266 1.41769 1.43589 1.51672 1.52837 1.77572 2.42924 2.63325 2.85413 3.15807 3.20223 3.21296 3.41681 3.66239 3.78555 3.87945 3.95646 3.96632 4.06352 4.13111 4.21181 4.31880 4.41443 4.45717 4.47054 4.53576 4.57714 4.59566 4.74118 4.76702 4.78089 4.80439 4.85493 4.87701 4.92426 4.98268 5.01647 5.05939 5.15829 5.19179 5.25906 5.26962 5.35932 5.54273 5.59139 5.64835 6.24958 6.25927 6.33955 6.90168 6.90824 7.03418 7.67619 8.23129 9.09524 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.016513 B = 0.003049 C = 0.002744 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1695.270040 B = 9180.925628 C =10201.185912 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C 0.130 3.870 3 C -0.144 4.144 4 C -0.079 4.079 5 C 0.548 3.452 6 O -0.582 6.582 7 N -0.592 5.592 8 C 0.104 3.896 9 C -0.117 4.117 10 C 0.088 3.912 11 H 0.052 0.948 12 O -0.380 6.380 13 C 0.052 3.948 14 C 0.145 3.855 15 N -0.602 5.602 16 C -0.268 4.268 17 H 0.064 0.936 18 C -0.042 4.042 19 N -0.931 5.931 20 Si 0.970 3.030 21 H -0.278 1.278 22 H -0.272 1.272 23 H -0.295 1.295 24 C 0.132 3.868 25 H 0.059 0.941 26 C 0.126 3.874 27 C -0.149 4.149 28 C 0.131 3.869 29 C -0.102 4.102 30 N -0.487 5.487 31 H 0.094 0.906 32 H 0.085 0.915 33 H 0.086 0.914 34 H 0.138 0.862 35 H 0.113 0.887 36 H 0.090 0.910 37 H 0.085 0.915 38 H 0.116 0.884 39 H 0.110 0.890 40 H 0.045 0.955 41 H 0.067 0.933 42 H 0.002 0.998 43 H 0.252 0.748 44 H 0.056 0.944 45 H 0.048 0.952 46 H 0.161 0.839 47 H 0.098 0.902 48 H 0.093 0.907 49 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.988 -21.630 -4.173 23.792 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.007 4.007 3 C -0.165 4.165 4 C -0.090 4.090 5 C 0.337 3.663 6 O -0.462 6.462 7 N -0.323 5.323 8 C -0.017 4.017 9 C -0.155 4.155 10 C 0.028 3.972 11 H 0.070 0.930 12 O -0.299 6.299 13 C -0.026 4.026 14 C 0.020 3.980 15 N -0.325 5.325 16 C -0.398 4.398 17 H 0.082 0.918 18 C -0.238 4.238 19 N -0.575 5.575 20 Si 0.798 3.202 21 H -0.205 1.205 22 H -0.197 1.197 23 H -0.221 1.221 24 C 0.024 3.976 25 H 0.078 0.922 26 C 0.001 3.999 27 C -0.169 4.169 28 C -0.007 4.007 29 C -0.159 4.159 30 N -0.199 5.199 31 H 0.112 0.888 32 H 0.103 0.897 33 H 0.105 0.895 34 H 0.156 0.844 35 H 0.131 0.869 36 H 0.109 0.891 37 H 0.104 0.896 38 H 0.134 0.866 39 H 0.128 0.872 40 H 0.063 0.937 41 H 0.085 0.915 42 H 0.020 0.980 43 H 0.062 0.938 44 H 0.074 0.926 45 H 0.067 0.933 46 H 0.178 0.822 47 H 0.117 0.883 48 H 0.112 0.888 49 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -9.461 -21.952 -3.686 24.186 hybrid contribution 0.687 3.083 0.323 3.175 sum -8.774 -18.869 -3.363 21.079 Atomic orbital electron populations 1.20816 0.86145 1.04475 1.04413 1.21648 0.98585 0.86938 0.93560 1.22113 0.92851 1.00611 1.00920 1.20199 0.94660 0.92979 1.01128 1.18863 0.80438 0.87354 0.79644 1.90776 1.69485 1.41527 1.44456 1.48343 1.24359 1.19864 1.39780 1.22275 1.02745 0.88863 0.87835 1.21869 0.98321 0.97518 0.97793 1.22197 0.84563 0.94536 0.95886 0.93027 1.87728 1.17949 1.36074 1.88145 1.23103 0.91239 0.89323 0.98919 1.21209 0.86575 0.95686 0.94531 1.44447 1.02742 1.02364 1.82995 1.19431 1.16663 0.82622 1.21105 0.91790 1.25903 0.99866 1.02078 0.95978 1.70117 1.29060 1.33101 1.25260 0.85230 0.78192 0.79807 0.76961 1.20478 1.19724 1.22105 1.21736 0.92527 0.90000 0.93358 0.92240 1.21907 0.93011 0.85513 0.99464 1.22386 1.02611 0.90814 1.01114 1.21783 0.88929 0.96802 0.93180 1.20852 1.00279 0.90017 1.04730 1.67353 1.10305 1.29478 1.12732 0.88772 0.89659 0.89517 0.84388 0.86890 0.89149 0.89644 0.86580 0.87168 0.93659 0.91464 0.97957 0.93845 0.92563 0.93313 0.82192 0.88344 0.88815 0.90105 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.40 10.17 71.24 0.72 -0.68 16 2 C 0.13 2.70 6.78 42.54 0.29 2.99 16 3 C -0.14 -3.55 9.41 22.63 0.21 -3.33 16 4 C -0.08 -2.10 5.13 -19.88 -0.10 -2.20 16 5 C 0.55 19.17 7.36 86.87 0.64 19.81 16 6 O -0.58 -26.05 16.35 -3.77 -0.06 -26.11 16 7 N -0.59 -19.44 2.98 -820.89 -2.45 -21.89 16 8 C 0.10 2.37 4.85 86.34 0.42 2.79 16 9 C -0.12 -2.69 5.82 30.48 0.18 -2.51 16 10 C 0.09 2.87 2.72 30.50 0.08 2.95 16 11 H 0.05 1.74 8.13 -2.38 -0.02 1.72 16 12 O -0.38 -12.82 9.68 -148.98 -1.44 -14.26 16 13 C 0.05 1.87 6.96 71.91 0.50 2.37 16 14 C 0.15 6.85 4.87 86.18 0.42 7.27 16 15 N -0.60 -30.08 2.70 -673.25 -1.82 -31.90 16 16 C -0.27 -14.82 9.69 84.03 0.81 -14.01 16 17 H 0.06 3.49 7.85 -2.91 -0.02 3.47 16 18 C -0.04 -2.34 5.08 84.86 0.43 -1.91 16 19 N -0.93 -54.62 11.04 21.65 0.24 -54.38 16 20 Si 0.97 45.11 29.57 68.60 2.03 47.14 16 21 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 22 H -0.27 -12.28 7.11 99.48 0.71 -11.57 16 23 H -0.29 -13.85 7.11 99.48 0.71 -13.15 16 24 C 0.13 5.52 2.95 44.95 0.13 5.65 16 25 H 0.06 2.62 7.99 -2.39 -0.02 2.60 16 26 C 0.13 5.30 5.68 86.35 0.49 5.79 16 27 C -0.15 -3.02 7.13 22.63 0.16 -2.85 16 28 C 0.13 2.39 6.78 42.54 0.29 2.68 16 29 C -0.10 -1.08 10.16 71.24 0.72 -0.36 16 30 N -0.49 -10.24 10.16 -172.22 -1.75 -11.98 16 31 H 0.09 1.05 8.14 -2.39 -0.02 1.03 16 32 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 33 H 0.09 1.03 8.08 -2.39 -0.02 1.01 16 34 H 0.14 3.40 8.06 -2.91 -0.02 3.38 16 35 H 0.11 2.03 4.74 -2.39 -0.01 2.02 16 36 H 0.09 1.95 7.95 -2.39 -0.02 1.93 16 37 H 0.09 1.88 8.14 -2.39 -0.02 1.86 16 38 H 0.12 1.96 8.14 -2.39 -0.02 1.94 16 39 H 0.11 3.35 8.14 -2.39 -0.02 3.33 16 40 H 0.05 1.61 8.14 -2.39 -0.02 1.59 16 41 H 0.07 3.55 6.22 -2.39 -0.01 3.53 16 42 H 0.00 0.12 7.21 -2.39 -0.02 0.10 16 43 H 0.25 14.37 8.31 -92.71 -0.77 13.60 16 44 H 0.06 2.51 6.69 -2.38 -0.02 2.50 16 45 H 0.05 2.48 7.00 -2.39 -0.02 2.46 16 46 H 0.16 2.63 6.73 -2.91 -0.02 2.61 16 47 H 0.10 0.75 8.14 -2.39 -0.02 0.73 16 48 H 0.09 0.71 8.08 -2.39 -0.02 0.69 16 49 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 Total: -1.00 -73.53 383.51 2.11 -71.42 By element: Atomic # 1 Polarization: 16.55 SS G_CDS: 0.96 Total: 17.50 kcal Atomic # 6 Polarization: 18.06 SS G_CDS: 6.40 Total: 24.46 kcal Atomic # 7 Polarization: -114.38 SS G_CDS: -5.77 Total: -120.15 kcal Atomic # 8 Polarization: -38.87 SS G_CDS: -1.50 Total: -40.38 kcal Atomic # 14 Polarization: 45.11 SS G_CDS: 2.03 Total: 47.14 kcal Total: -73.53 2.11 -71.42 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001074256607.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.798 kcal (2) G-P(sol) polarization free energy of solvation -73.532 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.734 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.112 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.421 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.622 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds