Wall clock time and date at job start Wed Apr 1 2020 04:18:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.31888 * 119.61889 * 2 1 4 4 C 1.31855 * 121.72552 * 180.30819 * 3 2 1 5 5 C 1.38230 * 120.76298 * 359.70656 * 4 3 2 6 6 C 1.38626 * 119.15943 * 359.97438 * 5 4 3 7 7 C 1.38181 * 119.61481 * 179.72787 * 2 1 3 8 8 C 1.50697 * 120.42239 * 359.97438 * 7 2 1 9 9 C 1.50697 * 109.47112 * 84.72356 * 8 7 2 10 10 O 1.21283 * 120.00308 * 0.02562 * 9 8 7 11 11 N 1.34783 * 120.00002 * 180.02562 * 9 8 7 12 12 C 1.46503 * 119.99976 * 180.02562 * 11 9 8 13 13 C 1.52999 * 109.46997 * 179.97438 * 12 11 9 14 14 H 1.09002 * 110.36655 * 57.81709 * 13 12 11 15 15 C 1.54554 * 110.32309 * 179.97438 * 13 12 11 16 16 C 1.54765 * 104.07660 * 142.49135 * 15 13 12 17 17 C 1.53345 * 103.67441 * 359.13588 * 16 15 13 18 18 C 1.52315 * 116.12389 * 108.90977 * 17 16 15 19 19 N 1.47287 * 87.68609 * 91.18717 * 18 17 16 20 20 C 1.36932 * 135.92689 * 206.13005 * 19 18 17 21 21 H 1.08002 * 120.00602 * 7.53991 * 20 19 18 22 22 C 1.38817 * 119.99605 * 187.54286 * 20 19 18 23 23 N 1.31629 * 119.99629 * 174.50923 * 22 20 19 24 24 Si 1.86799 * 120.00381 * 354.50965 * 22 20 19 25 25 H 1.48490 * 109.47132 * 174.95477 * 24 22 20 26 26 H 1.48498 * 109.46803 * 294.95709 * 24 22 20 27 27 H 1.48501 * 109.46836 * 54.95491 * 24 22 20 28 28 C 1.47290 * 88.14245 * 26.37920 * 19 18 17 29 29 O 1.43101 * 106.44702 * 337.45430 * 17 16 15 30 30 H 1.09000 * 109.47505 * 270.26948 * 1 2 3 31 31 H 1.08997 * 109.46896 * 30.27100 * 1 2 3 32 32 H 1.09010 * 109.47204 * 150.26829 * 1 2 3 33 33 H 1.07997 * 119.61803 * 179.72689 * 4 3 2 34 34 H 1.07995 * 120.41620 * 179.97438 * 5 4 3 35 35 H 1.08005 * 120.78630 * 180.02562 * 6 5 4 36 36 H 1.09003 * 109.47037 * 324.72514 * 8 7 2 37 37 H 1.08996 * 109.47258 * 204.72621 * 8 7 2 38 38 H 0.96993 * 119.99797 * 359.97438 * 11 9 8 39 39 H 1.08993 * 109.47334 * 59.99526 * 12 11 9 40 40 H 1.09006 * 109.46709 * 299.99122 * 12 11 9 41 41 H 1.08997 * 110.50615 * 23.84079 * 15 13 12 42 42 H 1.08999 * 110.62489 * 261.19660 * 15 13 12 43 43 H 1.09004 * 110.58530 * 240.59490 * 16 15 13 44 44 H 1.08996 * 110.71390 * 117.75142 * 16 15 13 45 45 H 1.08995 * 113.52003 * 336.47968 * 18 17 16 46 46 H 1.09007 * 113.57984 * 205.89345 * 18 17 16 47 47 H 0.97000 * 119.99952 * 354.91136 * 23 22 20 48 48 H 1.09003 * 113.51578 * 88.32543 * 28 19 18 49 49 H 1.08997 * 113.51428 * 218.91971 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1588 1.1465 0.0000 4 6 3.4765 1.1950 -0.0060 5 6 4.2267 0.0340 -0.0065 6 6 3.5765 -1.1903 -0.0001 7 6 2.1898 -1.2013 0.0057 8 6 1.4372 -2.5068 0.0125 9 6 1.0726 -2.8838 -1.4003 10 8 1.3928 -2.1635 -2.3220 11 7 0.3906 -4.0215 -1.6396 12 6 0.0366 -4.3882 -3.0131 13 6 -0.7276 -5.7136 -3.0061 14 1 -1.6198 -5.6339 -2.3850 15 6 -1.1118 -6.1193 -4.4472 16 6 -0.9416 -7.6574 -4.4633 17 6 -0.4575 -7.9835 -3.0453 18 6 -1.4563 -8.6962 -2.1429 19 7 -0.8940 -9.9689 -2.6261 20 6 -1.3458 -11.2539 -2.7661 21 1 -2.3877 -11.4817 -2.5954 22 6 -0.4647 -12.2639 -3.1275 23 7 -0.8737 -13.5147 -3.1569 24 14 1.3013 -11.8480 -3.5719 25 1 2.0630 -13.1023 -3.7994 26 1 1.3201 -11.0262 -4.8086 27 1 1.9247 -11.0849 -2.4609 28 6 0.3686 -9.2567 -2.8871 29 8 0.1233 -6.7818 -2.5291 30 1 -0.3634 0.0048 1.0276 31 1 -0.3633 0.8875 -0.5180 32 1 -0.3634 -0.8925 -0.5097 33 1 3.9753 2.1529 -0.0103 34 1 5.3057 0.0803 -0.0119 35 1 4.1367 -2.1137 0.0001 36 1 0.5291 -2.3996 0.6058 37 1 2.0646 -3.2856 0.4460 38 1 0.1348 -4.5977 -0.9025 39 1 0.9448 -4.4959 -3.6059 40 1 -0.5903 -3.6092 -3.4470 41 1 -0.4393 -5.6530 -5.1672 42 1 -2.1456 -5.8472 -4.6599 43 1 -0.1949 -7.9527 -5.2004 44 1 -1.8934 -8.1485 -4.6657 45 1 -2.4947 -8.5406 -2.4351 46 1 -1.2862 -8.5213 -1.0804 47 1 -1.7679 -13.7398 -2.8558 48 1 1.0411 -9.2352 -2.0295 49 1 0.8641 -9.5723 -3.8052 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001570234708.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:18:37 Heat of formation + Delta-G solvation = 14.782238 kcal Electronic energy + Delta-G solvation = -29733.940756 eV Core-core repulsion = 25663.046460 eV Total energy + Delta-G solvation = -4070.894296 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -40.92760 -40.38461 -39.45047 -37.04274 -34.74337 -34.11252 -33.27803 -32.38697 -32.10689 -30.10176 -28.82187 -27.65284 -26.85357 -25.65189 -24.02229 -22.95781 -22.18741 -21.55202 -21.38256 -20.43532 -19.19335 -17.55777 -17.40919 -17.15275 -16.89813 -16.57392 -16.18411 -15.82620 -15.26951 -15.08782 -14.93007 -14.82841 -14.49005 -13.80390 -13.66983 -13.57030 -13.42624 -13.35337 -13.18989 -13.07214 -12.75770 -12.68649 -12.48643 -12.28651 -12.00591 -11.75535 -11.64154 -11.58051 -11.31529 -11.04851 -10.73754 -10.47381 -10.37213 -10.27648 -9.93006 -9.76298 -9.73583 -9.30059 -9.22150 -9.08239 -9.04590 -8.96462 -7.25379 -6.36227 -3.31399 0.78202 1.00157 2.39414 2.91023 3.36976 3.40929 3.51393 3.60048 3.80923 4.00192 4.22539 4.43676 4.50250 4.54214 4.56587 4.61261 4.64721 4.67543 4.77753 4.86574 4.94101 4.99482 5.05196 5.11729 5.21634 5.26019 5.29450 5.31339 5.36058 5.37807 5.44014 5.54160 5.72764 5.73652 5.86249 5.86519 5.92544 6.09821 6.11507 6.16297 6.20513 6.21123 6.27362 6.30858 6.41180 6.48519 6.98974 7.18487 7.26037 7.71338 7.98454 8.16385 8.90002 9.41766 10.26647 11.13647 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.022058 B = 0.001997 C = 0.001927 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1269.047579 B =14018.668461 C =14528.396005 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C 0.144 3.856 3 N -0.487 5.487 4 C 0.101 3.899 5 C -0.179 4.179 6 C -0.060 4.060 7 C -0.116 4.116 8 C -0.101 4.101 9 C 0.514 3.486 10 O -0.535 6.535 11 N -0.723 5.723 12 C 0.128 3.872 13 C 0.062 3.938 14 H 0.075 0.925 15 C -0.145 4.145 16 C -0.114 4.114 17 C 0.060 3.940 18 C 0.110 3.890 19 N -0.619 5.619 20 C -0.303 4.303 21 H 0.084 0.916 22 C -0.023 4.023 23 N -0.931 5.931 24 Si 1.067 2.933 25 H -0.293 1.293 26 H -0.292 1.292 27 H -0.285 1.285 28 C 0.112 3.888 29 O -0.355 6.355 30 H 0.079 0.921 31 H 0.078 0.922 32 H 0.072 0.928 33 H 0.155 0.845 34 H 0.135 0.865 35 H 0.134 0.866 36 H 0.108 0.892 37 H 0.107 0.893 38 H 0.406 0.594 39 H 0.076 0.924 40 H 0.080 0.920 41 H 0.077 0.923 42 H 0.078 0.922 43 H 0.077 0.923 44 H 0.085 0.915 45 H 0.047 0.953 46 H 0.044 0.956 47 H 0.261 0.739 48 H 0.054 0.946 49 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.296 27.376 6.236 28.404 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.006 3.994 3 N -0.196 5.196 4 C -0.056 4.056 5 C -0.199 4.199 6 C -0.086 4.086 7 C -0.118 4.118 8 C -0.142 4.142 9 C 0.300 3.700 10 O -0.412 6.412 11 N -0.375 5.375 12 C 0.005 3.995 13 C 0.004 3.996 14 H 0.093 0.907 15 C -0.184 4.184 16 C -0.152 4.152 17 C 0.020 3.980 18 C -0.017 4.017 19 N -0.349 5.349 20 C -0.429 4.429 21 H 0.102 0.898 22 C -0.222 4.222 23 N -0.573 5.573 24 Si 0.899 3.101 25 H -0.220 1.220 26 H -0.220 1.220 27 H -0.212 1.212 28 C -0.014 4.014 29 O -0.273 6.273 30 H 0.097 0.903 31 H 0.097 0.903 32 H 0.091 0.909 33 H 0.172 0.828 34 H 0.152 0.848 35 H 0.152 0.848 36 H 0.126 0.874 37 H 0.125 0.875 38 H 0.241 0.759 39 H 0.094 0.906 40 H 0.098 0.902 41 H 0.095 0.905 42 H 0.097 0.903 43 H 0.096 0.904 44 H 0.104 0.896 45 H 0.065 0.935 46 H 0.061 0.939 47 H 0.071 0.929 48 H 0.071 0.929 49 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 5.559 27.781 5.119 28.790 hybrid contribution -1.121 -0.557 0.883 1.532 sum 4.438 27.224 6.002 28.228 Atomic orbital electron populations 1.20753 0.89093 1.03726 1.02811 1.21058 0.96840 0.87724 0.93735 1.67520 1.10130 1.29068 1.12865 1.22722 0.89459 0.98472 0.94978 1.22084 1.01469 0.93352 1.02976 1.21470 0.93585 0.98703 0.94857 1.20068 0.94229 0.94820 1.02720 1.20637 1.02313 0.95888 0.95317 1.20438 0.77765 0.80851 0.90993 1.90741 1.53281 1.51272 1.45882 1.45929 1.57843 1.23886 1.09876 1.21488 1.00194 0.94357 0.83480 1.23209 0.93331 0.87660 0.95393 0.90694 1.22947 1.02428 0.96803 0.96193 1.22334 1.03040 0.93962 0.95889 1.23622 0.96553 0.84564 0.93292 1.22679 0.96390 0.86206 0.96397 1.45759 1.09571 1.05478 1.74115 1.20109 0.95488 0.80436 1.46896 0.89783 1.25734 1.04588 0.92272 0.99574 1.70924 1.20779 1.16472 1.49089 0.83767 0.75842 0.74202 0.76295 1.22047 1.22013 1.21220 1.22708 0.91510 0.87460 0.99701 1.88939 1.49613 1.14874 1.73849 0.90263 0.90262 0.90929 0.82797 0.84757 0.84845 0.87402 0.87487 0.75887 0.90603 0.90224 0.90452 0.90281 0.90390 0.89622 0.93507 0.93859 0.92860 0.92865 0.92297 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.86 9.39 36.01 0.34 -0.52 16 2 C 0.14 1.50 6.78 -82.59 -0.56 0.94 16 3 N -0.49 -5.45 10.27 -9.47 -0.10 -5.55 16 4 C 0.10 0.91 11.18 -17.54 -0.20 0.71 16 5 C -0.18 -1.44 10.11 -39.44 -0.40 -1.84 16 6 C -0.06 -0.53 9.84 -39.28 -0.39 -0.92 16 7 C -0.12 -1.10 4.39 -104.48 -0.46 -1.56 16 8 C -0.10 -0.74 5.16 -29.04 -0.15 -0.89 16 9 C 0.51 5.31 7.03 -10.98 -0.08 5.23 16 10 O -0.54 -7.72 16.03 5.56 0.09 -7.63 16 11 N -0.72 -6.71 5.52 -60.29 -0.33 -7.04 16 12 C 0.13 1.31 5.28 -4.04 -0.02 1.29 16 13 C 0.06 0.69 3.35 -25.92 -0.09 0.60 16 14 H 0.08 0.75 8.14 -51.93 -0.42 0.32 16 15 C -0.15 -1.59 6.65 -24.99 -0.17 -1.76 16 16 C -0.11 -1.70 6.50 -25.62 -0.17 -1.86 16 17 C 0.06 1.03 1.39 -91.01 -0.13 0.90 16 18 C 0.11 2.10 8.18 -7.84 -0.06 2.04 16 19 N -0.62 -14.89 3.68 -184.84 -0.68 -15.57 16 20 C -0.30 -8.56 11.08 -15.06 -0.17 -8.73 16 21 H 0.08 2.49 8.06 -52.49 -0.42 2.07 16 22 C -0.02 -0.66 5.50 -17.42 -0.10 -0.76 16 23 N -0.93 -28.97 13.70 55.49 0.76 -28.21 16 24 Si 1.07 26.47 25.17 -169.99 -4.28 22.19 16 25 H -0.29 -7.40 7.11 56.52 0.40 -7.00 16 26 H -0.29 -6.81 6.49 56.52 0.37 -6.45 16 27 H -0.29 -6.66 6.18 56.52 0.35 -6.31 16 28 C 0.11 2.37 5.27 -7.69 -0.04 2.32 16 29 O -0.35 -5.25 11.12 -35.23 -0.39 -5.64 16 30 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 32 H 0.07 0.56 6.14 -51.92 -0.32 0.24 16 33 H 0.15 0.94 8.06 -52.49 -0.42 0.52 16 34 H 0.13 0.72 8.06 -52.49 -0.42 0.30 16 35 H 0.13 0.91 8.06 -52.48 -0.42 0.49 16 36 H 0.11 0.54 7.02 -51.93 -0.36 0.18 16 37 H 0.11 0.59 8.06 -51.93 -0.42 0.17 16 38 H 0.41 3.09 8.47 -40.82 -0.35 2.74 16 39 H 0.08 0.90 8.14 -51.93 -0.42 0.47 16 40 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 41 H 0.08 0.77 7.87 -51.93 -0.41 0.36 16 42 H 0.08 0.73 8.14 -51.93 -0.42 0.30 16 43 H 0.08 1.18 8.12 -51.93 -0.42 0.76 16 44 H 0.09 1.33 7.92 -51.93 -0.41 0.92 16 45 H 0.05 0.85 8.07 -51.93 -0.42 0.43 16 46 H 0.04 0.81 8.14 -51.93 -0.42 0.39 16 47 H 0.26 8.02 8.73 -40.82 -0.36 7.66 16 48 H 0.05 1.14 7.60 -51.93 -0.39 0.74 16 49 H 0.06 1.28 4.77 -51.93 -0.25 1.03 16 LS Contribution 394.35 15.07 5.94 5.94 Total: -1.00 -35.87 394.35 -9.45 -45.32 By element: Atomic # 1 Polarization: 8.61 SS G_CDS: -7.64 Total: 0.97 kcal Atomic # 6 Polarization: -1.96 SS G_CDS: -2.82 Total: -4.79 kcal Atomic # 7 Polarization: -56.02 SS G_CDS: -0.35 Total: -56.37 kcal Atomic # 8 Polarization: -12.97 SS G_CDS: -0.30 Total: -13.27 kcal Atomic # 14 Polarization: 26.47 SS G_CDS: -4.28 Total: 22.19 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -35.87 -9.45 -45.32 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001570234708.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.106 kcal (2) G-P(sol) polarization free energy of solvation -35.871 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.235 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.453 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.324 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.782 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds