Wall clock time and date at job start Wed Apr 1 2020 03:53:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50709 * 1 3 3 N 1.31411 * 119.63965 * 2 1 4 4 C 1.32718 * 121.79777 * 180.02562 * 3 2 1 5 5 C 1.48338 * 119.56710 * 179.72826 * 4 3 2 6 6 O 1.21496 * 119.99756 * 172.56187 * 5 4 3 7 7 N 1.34778 * 120.00269 * 352.55262 * 5 4 3 8 8 C 1.46494 * 120.00069 * 182.35067 * 7 5 4 9 9 C 1.46500 * 119.99879 * 2.36403 * 7 5 4 10 10 C 1.39297 * 120.85832 * 0.02562 * 4 3 2 11 11 C 1.38448 * 119.19273 * 359.97438 * 10 4 3 12 12 C 1.39730 * 119.63838 * 180.02562 * 2 1 3 13 13 C 1.48003 * 120.46105 * 0.02562 * 12 2 1 14 14 O 1.21537 * 120.00131 * 61.62466 * 13 12 2 15 15 N 1.34774 * 120.00179 * 241.61953 * 13 12 2 16 16 C 1.46503 * 119.99707 * 355.30249 * 15 13 12 17 17 C 1.50704 * 109.46927 * 90.00044 * 16 15 13 18 18 H 1.08000 * 119.99763 * 359.97438 * 17 16 15 19 19 C 1.37876 * 120.00281 * 180.02562 * 17 16 15 20 20 N 1.31514 * 119.99508 * 359.97438 * 19 17 16 21 21 Si 1.86796 * 120.00024 * 179.97438 * 19 17 16 22 22 H 1.48506 * 109.47306 * 60.00292 * 21 19 17 23 23 H 1.48505 * 109.47151 * 179.97438 * 21 19 17 24 24 H 1.48498 * 109.47368 * 300.00028 * 21 19 17 25 25 C 1.46499 * 120.00485 * 175.30654 * 15 13 12 26 26 C 1.53006 * 109.47010 * 94.89030 * 25 15 13 27 27 C 1.52995 * 117.49763 * 246.45485 * 26 25 15 28 28 C 1.53001 * 117.49532 * 177.79931 * 26 25 15 29 29 H 1.09000 * 109.46879 * 95.19634 * 1 2 3 30 30 H 1.09000 * 109.46900 * 215.19782 * 1 2 3 31 31 H 1.08998 * 109.47183 * 335.19579 * 1 2 3 32 32 H 1.09003 * 109.46756 * 90.00959 * 8 7 5 33 33 H 1.09003 * 109.47730 * 210.00394 * 8 7 5 34 34 H 1.08992 * 109.47378 * 330.01080 * 8 7 5 35 35 H 1.08998 * 109.47411 * 83.59305 * 9 7 5 36 36 H 1.09004 * 109.47074 * 203.60162 * 9 7 5 37 37 H 1.09003 * 109.47080 * 323.59247 * 9 7 5 38 38 H 1.07995 * 120.40469 * 179.97438 * 10 4 3 39 39 H 1.07998 * 120.82082 * 180.02562 * 11 10 4 40 40 H 1.08994 * 109.47306 * 209.99586 * 16 15 13 41 41 H 1.08994 * 109.47280 * 330.00605 * 16 15 13 42 42 H 0.97008 * 119.99578 * 180.02562 * 20 19 17 43 43 H 1.09002 * 109.47181 * 214.88810 * 25 15 13 44 44 H 1.08995 * 109.46635 * 334.89465 * 25 15 13 45 45 H 1.08997 * 115.54726 * 32.13154 * 26 25 15 46 46 H 1.09001 * 117.50207 * 0.02562 * 27 26 25 47 47 H 1.09004 * 117.49639 * 145.02327 * 27 26 25 48 48 H 1.09002 * 117.49608 * 214.98422 * 28 26 25 49 49 H 1.09004 * 117.50114 * 359.97438 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.1570 1.1422 0.0000 4 6 3.4832 1.1921 -0.0005 5 6 4.1661 2.5090 -0.0066 6 8 5.3720 2.5685 0.1291 7 7 3.4489 3.6393 -0.1628 8 6 4.1284 4.9359 -0.2205 9 6 1.9897 3.5714 -0.2747 10 6 4.2422 0.0241 -0.0016 11 6 3.5967 -1.2007 -0.0016 12 6 2.1981 -1.2145 -0.0005 13 6 1.4603 -2.4975 -0.0017 14 8 0.7241 -2.7744 -0.9282 15 7 1.6049 -3.3590 1.0247 16 6 2.5690 -3.0735 2.0902 17 6 1.8934 -2.2815 3.1799 18 1 0.8504 -2.0169 3.0877 19 6 2.6071 -1.8938 4.2941 20 7 3.8773 -2.2157 4.4061 21 14 1.7698 -0.9115 5.6444 22 1 0.6379 -1.6970 6.1988 23 1 2.7469 -0.6222 6.7246 24 1 1.2587 0.3650 5.0837 25 6 0.7981 -4.5808 1.0748 26 6 1.5895 -5.7398 0.4653 27 6 1.0664 -6.3431 -0.8397 28 6 0.9345 -7.1225 0.4710 29 1 -0.3633 -0.0931 -1.0235 30 1 -0.3633 -0.8398 0.5924 31 1 -0.3633 0.9328 0.4311 32 1 4.3793 5.1688 -1.2554 33 1 3.4705 5.7090 0.1766 34 1 5.0408 4.8947 0.3741 35 1 1.5505 3.5287 0.7219 36 1 1.6237 4.4562 -0.7956 37 1 1.7094 2.6788 -0.8339 38 1 5.3210 0.0733 -0.0024 39 1 4.1592 -2.1226 -0.0020 40 1 2.9440 -4.0106 2.5015 41 1 3.3997 -2.4968 1.6837 42 1 4.3793 -1.9432 5.1901 43 1 0.5543 -4.8129 2.1115 44 1 -0.1218 -4.4320 0.5096 45 1 2.6700 -5.6941 0.6012 46 1 0.1588 -5.9142 -1.2644 47 1 1.8029 -6.6948 -1.5624 48 1 1.5843 -7.9866 0.6104 49 1 -0.0599 -7.2066 0.9094 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000104414205.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:53:14 Heat of formation + Delta-G solvation = 13.020156 kcal Electronic energy + Delta-G solvation = -31307.155626 eV Core-core repulsion = 27236.184921 eV Total energy + Delta-G solvation = -4070.970705 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.78206 -39.54921 -38.40767 -36.93555 -35.56301 -34.88883 -32.79087 -32.53552 -32.37634 -28.29629 -28.04987 -27.55998 -26.83512 -25.93265 -24.09354 -22.95629 -22.13526 -22.08907 -20.64303 -19.86584 -19.03139 -17.41809 -16.91371 -16.59456 -16.35310 -16.06850 -15.81695 -15.55212 -14.91928 -14.59757 -14.44085 -14.21111 -14.02504 -13.85611 -13.35079 -13.29578 -13.09024 -13.04368 -12.57861 -12.53405 -12.40156 -12.20703 -12.07806 -12.02001 -11.95406 -11.72029 -11.41242 -11.32625 -11.29794 -10.99385 -10.80958 -10.37796 -10.17804 -10.16696 -9.83340 -9.73713 -9.52829 -9.44454 -8.98015 -8.72267 -8.56279 -8.50312 -7.88098 -6.23290 -4.29995 0.77016 1.47990 2.76376 3.00996 3.16838 3.21115 3.26892 3.29604 3.63060 4.02512 4.13976 4.17530 4.29348 4.73659 4.93715 5.00291 5.03525 5.11766 5.18508 5.21063 5.26976 5.27199 5.32681 5.37452 5.50254 5.68644 5.71714 5.74631 5.79933 5.83672 5.86958 5.89693 6.00444 6.08515 6.14371 6.18302 6.21643 6.30413 6.31022 6.31995 6.48464 6.54510 6.66081 6.83949 7.05857 7.31143 7.37150 7.69460 7.86728 7.97686 8.12921 8.23398 8.65496 8.80513 9.37380 10.83736 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.009586 B = 0.004156 C = 0.003373 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2920.293011 B = 6735.889965 C = 8298.382678 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 C 0.165 3.835 3 N -0.457 5.457 4 C 0.084 3.916 5 C 0.573 3.427 6 O -0.536 6.536 7 N -0.606 5.606 8 C 0.085 3.915 9 C 0.075 3.925 10 C -0.113 4.113 11 C -0.036 4.036 12 C -0.117 4.117 13 C 0.563 3.437 14 O -0.556 6.556 15 N -0.581 5.581 16 C 0.229 3.771 17 C -0.537 4.537 18 H 0.059 0.941 19 C 0.069 3.931 20 N -0.887 5.887 21 Si 0.892 3.108 22 H -0.275 1.275 23 H -0.285 1.285 24 H -0.275 1.275 25 C 0.150 3.850 26 C -0.161 4.161 27 C -0.175 4.175 28 C -0.179 4.179 29 H 0.082 0.918 30 H 0.077 0.923 31 H 0.076 0.924 32 H 0.054 0.946 33 H 0.069 0.931 34 H 0.076 0.924 35 H 0.057 0.943 36 H 0.055 0.945 37 H 0.112 0.888 38 H 0.148 0.852 39 H 0.145 0.855 40 H 0.040 0.960 41 H 0.044 0.956 42 H 0.266 0.734 43 H 0.084 0.916 44 H 0.077 0.923 45 H 0.104 0.896 46 H 0.095 0.905 47 H 0.087 0.913 48 H 0.090 0.910 49 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.938 3.825 -9.221 10.732 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.025 3.975 3 N -0.170 5.170 4 C -0.054 4.054 5 C 0.361 3.639 6 O -0.412 6.412 7 N -0.339 5.339 8 C -0.058 4.058 9 C -0.067 4.067 10 C -0.134 4.134 11 C -0.062 4.062 12 C -0.122 4.122 13 C 0.350 3.650 14 O -0.436 6.436 15 N -0.310 5.310 16 C 0.109 3.891 17 C -0.576 4.576 18 H 0.078 0.922 19 C -0.135 4.135 20 N -0.525 5.525 21 Si 0.720 3.280 22 H -0.200 1.200 23 H -0.211 1.211 24 H -0.201 1.201 25 C 0.027 3.973 26 C -0.180 4.180 27 C -0.212 4.212 28 C -0.217 4.217 29 H 0.101 0.899 30 H 0.096 0.904 31 H 0.095 0.905 32 H 0.073 0.927 33 H 0.088 0.912 34 H 0.095 0.905 35 H 0.076 0.924 36 H 0.073 0.927 37 H 0.130 0.870 38 H 0.166 0.834 39 H 0.163 0.837 40 H 0.058 0.942 41 H 0.061 0.939 42 H 0.076 0.924 43 H 0.102 0.898 44 H 0.095 0.905 45 H 0.122 0.878 46 H 0.113 0.887 47 H 0.105 0.895 48 H 0.109 0.891 49 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -3.948 4.543 -9.460 11.212 hybrid contribution 0.263 -0.203 1.187 1.233 sum -3.685 4.340 -8.273 10.042 Atomic orbital electron populations 1.20707 0.88053 1.03609 1.03257 1.21200 0.96976 0.86541 0.92826 1.67763 1.08255 1.27885 1.13092 1.20912 0.89893 0.93564 1.00994 1.18010 0.86086 0.83287 0.76544 1.90752 1.13654 1.86648 1.50168 1.47593 1.08640 1.06078 1.71551 1.21673 0.98589 0.83725 1.01815 1.22446 0.77745 1.03632 1.02898 1.21849 1.01922 0.91261 0.98396 1.21601 0.92915 0.98583 0.93100 1.20839 0.94673 0.95236 1.01426 1.18012 0.81499 0.83111 0.82405 1.90709 1.40092 1.77202 1.35612 1.48169 1.40153 1.19572 1.23128 1.19676 0.87509 0.97586 0.84311 1.21345 0.97332 1.35363 1.03525 0.92231 1.24889 0.94772 0.95725 0.98103 1.69888 1.07560 1.45536 1.29520 0.86632 0.79340 0.80661 0.81390 1.20019 1.21055 1.20079 1.20911 0.93108 0.82194 1.01130 1.22751 1.00237 0.93967 1.01075 1.22972 1.03225 1.04068 0.90889 1.22910 1.02180 0.94801 1.01807 0.89942 0.90420 0.90462 0.92737 0.91186 0.90481 0.92410 0.92672 0.87048 0.83414 0.83720 0.94224 0.93872 0.92386 0.89789 0.90493 0.87780 0.88668 0.89493 0.89114 0.88893 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.50 9.36 36.01 0.34 -1.16 16 2 C 0.16 2.91 6.82 -82.21 -0.56 2.35 16 3 N -0.46 -7.77 5.92 -5.75 -0.03 -7.80 16 4 C 0.08 1.49 6.63 -82.93 -0.55 0.94 16 5 C 0.57 9.90 7.66 -12.10 -0.09 9.80 16 6 O -0.54 -10.37 15.90 5.37 0.09 -10.29 16 7 N -0.61 -8.53 3.27 -190.46 -0.62 -9.15 16 8 C 0.08 0.92 10.43 59.84 0.62 1.55 16 9 C 0.08 0.90 9.30 59.85 0.56 1.46 16 10 C -0.11 -1.99 9.62 -39.11 -0.38 -2.36 16 11 C -0.04 -0.64 7.83 -38.89 -0.30 -0.95 16 12 C -0.12 -2.20 4.94 -104.73 -0.52 -2.72 16 13 C 0.56 11.06 5.90 -12.26 -0.07 10.99 16 14 O -0.56 -11.43 16.22 5.33 0.09 -11.34 16 15 N -0.58 -11.43 2.46 -176.11 -0.43 -11.86 16 16 C 0.23 5.15 4.94 -5.19 -0.03 5.12 16 17 C -0.54 -13.51 9.38 -34.44 -0.32 -13.83 16 18 H 0.06 1.51 7.81 -52.49 -0.41 1.10 16 19 C 0.07 1.80 5.46 -17.82 -0.10 1.70 16 20 N -0.89 -24.17 13.29 55.43 0.74 -23.43 16 21 Si 0.89 20.65 29.54 -169.99 -5.02 15.62 16 22 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 23 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 24 H -0.28 -6.42 7.11 56.52 0.40 -6.01 16 25 C 0.15 2.57 5.71 -4.04 -0.02 2.55 16 26 C -0.16 -2.44 6.01 -90.62 -0.54 -2.99 16 27 C -0.17 -2.35 10.18 -26.70 -0.27 -2.62 16 28 C -0.18 -2.23 10.25 -26.70 -0.27 -2.50 16 29 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 30 H 0.08 1.28 7.27 -51.93 -0.38 0.91 16 31 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 32 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 33 H 0.07 0.59 8.07 -51.93 -0.42 0.17 16 34 H 0.08 0.93 7.39 -51.93 -0.38 0.55 16 35 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 36 H 0.05 0.50 8.02 -51.93 -0.42 0.08 16 37 H 0.11 1.46 5.26 -52.11 -0.27 1.18 16 38 H 0.15 2.40 7.65 -52.49 -0.40 2.00 16 39 H 0.15 2.38 7.37 -52.49 -0.39 1.99 16 40 H 0.04 0.94 8.07 -51.93 -0.42 0.52 16 41 H 0.04 1.00 4.56 -51.93 -0.24 0.77 16 42 H 0.27 7.01 8.31 -40.82 -0.34 6.67 16 43 H 0.08 1.45 8.11 -51.93 -0.42 1.03 16 44 H 0.08 1.31 7.09 -51.93 -0.37 0.94 16 45 H 0.10 1.67 8.14 -51.93 -0.42 1.24 16 46 H 0.09 1.32 8.04 -51.93 -0.42 0.90 16 47 H 0.09 1.09 8.14 -51.93 -0.42 0.67 16 48 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 49 H 0.09 1.07 8.14 -51.93 -0.42 0.65 16 LS Contribution 406.49 15.07 6.13 6.13 Total: -1.00 -30.11 406.49 -9.04 -39.15 By element: Atomic # 1 Polarization: 13.09 SS G_CDS: -7.45 Total: 5.64 kcal Atomic # 6 Polarization: 9.84 SS G_CDS: -2.52 Total: 7.32 kcal Atomic # 7 Polarization: -51.88 SS G_CDS: -0.35 Total: -52.24 kcal Atomic # 8 Polarization: -21.80 SS G_CDS: 0.17 Total: -21.63 kcal Atomic # 14 Polarization: 20.65 SS G_CDS: -5.02 Total: 15.62 kcal Total LS contribution 6.13 Total: 6.13 kcal Total: -30.11 -9.04 -39.15 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000104414205.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.171 kcal (2) G-P(sol) polarization free energy of solvation -30.110 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.061 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.041 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.151 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.020 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds