Wall clock time and date at job start Wed Apr 1 2020 03:53:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50709 * 1 3 3 N 1.31411 * 119.63965 * 2 1 4 4 C 1.32718 * 121.79777 * 180.02562 * 3 2 1 5 5 C 1.48338 * 119.56710 * 179.72826 * 4 3 2 6 6 O 1.21496 * 119.99756 * 172.56187 * 5 4 3 7 7 N 1.34778 * 120.00269 * 352.55262 * 5 4 3 8 8 C 1.46494 * 120.00069 * 182.35067 * 7 5 4 9 9 C 1.46500 * 119.99879 * 2.36403 * 7 5 4 10 10 C 1.39297 * 120.85832 * 0.02562 * 4 3 2 11 11 C 1.38448 * 119.19273 * 359.97438 * 10 4 3 12 12 C 1.39730 * 119.63838 * 180.02562 * 2 1 3 13 13 C 1.48003 * 120.46105 * 0.02562 * 12 2 1 14 14 O 1.21537 * 120.00131 * 61.62466 * 13 12 2 15 15 N 1.34774 * 120.00179 * 241.61953 * 13 12 2 16 16 C 1.46503 * 119.99707 * 355.30249 * 15 13 12 17 17 C 1.50704 * 109.46927 * 90.00044 * 16 15 13 18 18 H 1.08000 * 119.99763 * 359.97438 * 17 16 15 19 19 C 1.37876 * 120.00281 * 180.02562 * 17 16 15 20 20 N 1.31514 * 119.99508 * 359.97438 * 19 17 16 21 21 Si 1.86796 * 120.00024 * 179.97438 * 19 17 16 22 22 H 1.48506 * 109.47306 * 60.00292 * 21 19 17 23 23 H 1.48505 * 109.47151 * 179.97438 * 21 19 17 24 24 H 1.48498 * 109.47368 * 300.00028 * 21 19 17 25 25 C 1.46499 * 120.00485 * 175.30654 * 15 13 12 26 26 C 1.53006 * 109.47010 * 94.89030 * 25 15 13 27 27 C 1.52995 * 117.49763 * 246.45485 * 26 25 15 28 28 C 1.53001 * 117.49532 * 177.79931 * 26 25 15 29 29 H 1.09000 * 109.46879 * 95.19634 * 1 2 3 30 30 H 1.09000 * 109.46900 * 215.19782 * 1 2 3 31 31 H 1.08998 * 109.47183 * 335.19579 * 1 2 3 32 32 H 1.09003 * 109.46756 * 90.00959 * 8 7 5 33 33 H 1.09003 * 109.47730 * 210.00394 * 8 7 5 34 34 H 1.08992 * 109.47378 * 330.01080 * 8 7 5 35 35 H 1.08998 * 109.47411 * 83.59305 * 9 7 5 36 36 H 1.09004 * 109.47074 * 203.60162 * 9 7 5 37 37 H 1.09003 * 109.47080 * 323.59247 * 9 7 5 38 38 H 1.07995 * 120.40469 * 179.97438 * 10 4 3 39 39 H 1.07998 * 120.82082 * 180.02562 * 11 10 4 40 40 H 1.08994 * 109.47306 * 209.99586 * 16 15 13 41 41 H 1.08994 * 109.47280 * 330.00605 * 16 15 13 42 42 H 0.97008 * 119.99578 * 180.02562 * 20 19 17 43 43 H 1.09002 * 109.47181 * 214.88810 * 25 15 13 44 44 H 1.08995 * 109.46635 * 334.89465 * 25 15 13 45 45 H 1.08997 * 115.54726 * 32.13154 * 26 25 15 46 46 H 1.09001 * 117.50207 * 0.02562 * 27 26 25 47 47 H 1.09004 * 117.49639 * 145.02327 * 27 26 25 48 48 H 1.09002 * 117.49608 * 214.98422 * 28 26 25 49 49 H 1.09004 * 117.50114 * 359.97438 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.1570 1.1422 0.0000 4 6 3.4832 1.1921 -0.0005 5 6 4.1661 2.5090 -0.0066 6 8 5.3720 2.5685 0.1291 7 7 3.4489 3.6393 -0.1628 8 6 4.1284 4.9359 -0.2205 9 6 1.9897 3.5714 -0.2747 10 6 4.2422 0.0241 -0.0016 11 6 3.5967 -1.2007 -0.0016 12 6 2.1981 -1.2145 -0.0005 13 6 1.4603 -2.4975 -0.0017 14 8 0.7241 -2.7744 -0.9282 15 7 1.6049 -3.3590 1.0247 16 6 2.5690 -3.0735 2.0902 17 6 1.8934 -2.2815 3.1799 18 1 0.8504 -2.0169 3.0877 19 6 2.6071 -1.8938 4.2941 20 7 3.8773 -2.2157 4.4061 21 14 1.7698 -0.9115 5.6444 22 1 0.6379 -1.6970 6.1988 23 1 2.7469 -0.6222 6.7246 24 1 1.2587 0.3650 5.0837 25 6 0.7981 -4.5808 1.0748 26 6 1.5895 -5.7398 0.4653 27 6 1.0664 -6.3431 -0.8397 28 6 0.9345 -7.1225 0.4710 29 1 -0.3633 -0.0931 -1.0235 30 1 -0.3633 -0.8398 0.5924 31 1 -0.3633 0.9328 0.4311 32 1 4.3793 5.1688 -1.2554 33 1 3.4705 5.7090 0.1766 34 1 5.0408 4.8947 0.3741 35 1 1.5505 3.5287 0.7219 36 1 1.6237 4.4562 -0.7956 37 1 1.7094 2.6788 -0.8339 38 1 5.3210 0.0733 -0.0024 39 1 4.1592 -2.1226 -0.0020 40 1 2.9440 -4.0106 2.5015 41 1 3.3997 -2.4968 1.6837 42 1 4.3793 -1.9432 5.1901 43 1 0.5543 -4.8129 2.1115 44 1 -0.1218 -4.4320 0.5096 45 1 2.6700 -5.6941 0.6012 46 1 0.1588 -5.9142 -1.2644 47 1 1.8029 -6.6948 -1.5624 48 1 1.5843 -7.9866 0.6104 49 1 -0.0599 -7.2066 0.9094 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000104414205.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:53:13 Heat of formation + Delta-G solvation = -2.395969 kcal Electronic energy + Delta-G solvation = -31307.824119 eV Core-core repulsion = 27236.184921 eV Total energy + Delta-G solvation = -4071.639198 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -42.16213 -40.95637 -39.77650 -38.18571 -36.76476 -36.50041 -34.47919 -34.11348 -33.73454 -29.74903 -29.20231 -29.05940 -28.12899 -27.23126 -25.53522 -24.67045 -23.43776 -23.17327 -21.90882 -21.13394 -20.50744 -18.77671 -18.60239 -18.14844 -17.78627 -17.59011 -17.04075 -16.81250 -16.50509 -16.11025 -15.81069 -15.44375 -15.32729 -15.22047 -14.67141 -14.64297 -14.51527 -14.25061 -14.21581 -13.76693 -13.65732 -13.47330 -13.37481 -13.34888 -13.13822 -13.13488 -12.88587 -12.73360 -12.57617 -12.54452 -12.32478 -12.15395 -11.79623 -11.52223 -11.33382 -11.09962 -10.93698 -10.79352 -10.58511 -10.27586 -10.08432 -9.66627 -9.51716 -8.22748 -6.34775 -0.64256 0.08866 1.35615 1.37006 1.39410 1.44796 1.68161 1.87512 2.15618 2.38181 2.67743 2.86979 2.97145 3.09610 3.45943 3.51325 3.63777 3.84218 3.93231 4.03461 4.07963 4.15523 4.34668 4.40124 4.43184 4.45118 4.54439 4.56463 4.67385 4.71959 4.78835 4.82917 4.83429 4.88616 4.89354 4.89634 4.94845 5.03940 5.05057 5.17694 5.19136 5.29191 5.30159 5.41069 5.59528 5.62463 5.77267 6.03133 6.12962 6.43742 6.53239 6.76053 6.94610 7.15057 7.36471 8.82597 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.009586 B = 0.004156 C = 0.003373 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2920.293011 B = 6735.889965 C = 8298.382678 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 C 0.156 3.844 3 N -0.444 5.444 4 C 0.076 3.924 5 C 0.564 3.436 6 O -0.567 6.567 7 N -0.600 5.600 8 C 0.079 3.921 9 C 0.074 3.926 10 C -0.122 4.122 11 C -0.040 4.040 12 C -0.140 4.140 13 C 0.567 3.433 14 O -0.566 6.566 15 N -0.583 5.583 16 C 0.244 3.756 17 C -0.538 4.538 18 H 0.054 0.946 19 C 0.025 3.975 20 N -0.916 5.916 21 Si 0.943 3.057 22 H -0.265 1.265 23 H -0.285 1.285 24 H -0.276 1.276 25 C 0.150 3.850 26 C -0.184 4.184 27 C -0.170 4.170 28 C -0.156 4.156 29 H 0.097 0.903 30 H 0.061 0.939 31 H 0.098 0.902 32 H 0.071 0.929 33 H 0.102 0.898 34 H 0.061 0.939 35 H 0.054 0.946 36 H 0.092 0.908 37 H 0.101 0.899 38 H 0.155 0.845 39 H 0.151 0.849 40 H 0.025 0.975 41 H 0.037 0.963 42 H 0.265 0.735 43 H 0.079 0.921 44 H 0.078 0.922 45 H 0.091 0.909 46 H 0.091 0.909 47 H 0.096 0.904 48 H 0.107 0.893 49 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.421 4.722 -9.607 11.999 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.016 3.984 3 N -0.157 5.157 4 C -0.062 4.062 5 C 0.351 3.649 6 O -0.446 6.446 7 N -0.331 5.331 8 C -0.062 4.062 9 C -0.068 4.068 10 C -0.143 4.143 11 C -0.066 4.066 12 C -0.145 4.145 13 C 0.354 3.646 14 O -0.447 6.447 15 N -0.311 5.311 16 C 0.123 3.877 17 C -0.577 4.577 18 H 0.072 0.928 19 C -0.175 4.175 20 N -0.555 5.555 21 Si 0.769 3.231 22 H -0.190 1.190 23 H -0.210 1.210 24 H -0.202 1.202 25 C 0.027 3.973 26 C -0.204 4.204 27 C -0.207 4.207 28 C -0.193 4.193 29 H 0.116 0.884 30 H 0.080 0.920 31 H 0.117 0.883 32 H 0.089 0.911 33 H 0.120 0.880 34 H 0.080 0.920 35 H 0.072 0.928 36 H 0.111 0.889 37 H 0.118 0.882 38 H 0.172 0.828 39 H 0.169 0.831 40 H 0.043 0.957 41 H 0.055 0.945 42 H 0.075 0.925 43 H 0.097 0.903 44 H 0.097 0.903 45 H 0.109 0.891 46 H 0.110 0.890 47 H 0.115 0.885 48 H 0.126 0.874 49 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -5.480 5.450 -9.859 12.527 hybrid contribution 0.691 -0.436 1.244 1.488 sum -4.789 5.014 -8.615 11.058 Atomic orbital electron populations 1.20730 0.86293 1.03996 1.04071 1.21655 0.98257 0.86322 0.92216 1.67940 1.07780 1.27254 1.12757 1.21216 0.90323 0.94139 1.00509 1.18046 0.85889 0.83955 0.77016 1.90728 1.14784 1.87059 1.52071 1.47792 1.09557 1.06221 1.69500 1.21917 0.98579 0.82814 1.02904 1.22515 0.76377 1.04971 1.02952 1.21981 1.02412 0.91286 0.98616 1.21726 0.92885 0.99101 0.92924 1.20972 0.95124 0.95447 1.03004 1.18080 0.81241 0.83219 0.82047 1.90686 1.40699 1.77531 1.35834 1.48112 1.39968 1.20577 1.22476 1.19305 0.87721 0.96254 0.84405 1.21565 0.97056 1.35012 1.04065 0.92777 1.25533 0.95251 0.96714 1.00034 1.69981 1.08617 1.46818 1.30072 0.85828 0.78687 0.79423 0.79193 1.19019 1.21040 1.20163 1.21004 0.93170 0.82001 1.01111 1.22600 0.99425 0.95100 1.03238 1.23002 1.03066 1.03742 0.90918 1.23026 1.02639 0.93460 1.00213 0.88444 0.92018 0.88347 0.91055 0.87973 0.91990 0.92768 0.88928 0.88155 0.82769 0.83115 0.95721 0.94492 0.92549 0.90298 0.90332 0.89075 0.89048 0.88512 0.87445 0.87667 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.74 9.36 71.24 0.67 -2.07 16 2 C 0.16 5.44 6.82 42.99 0.29 5.73 16 3 N -0.44 -14.80 5.92 -172.11 -1.02 -15.82 16 4 C 0.08 2.69 6.63 41.96 0.28 2.97 16 5 C 0.56 19.28 7.66 86.93 0.67 19.94 16 6 O -0.57 -22.15 15.90 -3.70 -0.06 -22.21 16 7 N -0.60 -15.83 3.27 -874.79 -2.86 -18.69 16 8 C 0.08 1.55 10.43 127.77 1.33 2.88 16 9 C 0.07 1.57 9.30 127.77 1.19 2.76 16 10 C -0.12 -4.37 9.62 22.57 0.22 -4.15 16 11 C -0.04 -1.48 7.83 22.71 0.18 -1.30 16 12 C -0.14 -5.35 4.94 -19.93 -0.10 -5.45 16 13 C 0.57 22.45 5.90 86.83 0.51 22.96 16 14 O -0.57 -23.23 16.22 -3.83 -0.06 -23.29 16 15 N -0.58 -23.24 2.46 -829.39 -2.04 -25.28 16 16 C 0.24 11.22 4.94 85.63 0.42 11.65 16 17 C -0.54 -27.30 9.38 25.60 0.24 -27.06 16 18 H 0.05 2.76 7.81 -2.91 -0.02 2.74 16 19 C 0.03 1.33 5.46 84.65 0.46 1.79 16 20 N -0.92 -50.47 13.29 21.45 0.28 -50.19 16 21 Si 0.94 42.11 29.54 68.60 2.03 44.13 16 22 H -0.27 -11.37 7.11 99.48 0.71 -10.66 16 23 H -0.28 -12.64 7.11 99.48 0.71 -11.94 16 24 H -0.28 -12.29 7.11 99.48 0.71 -11.58 16 25 C 0.15 5.15 5.71 86.38 0.49 5.64 16 26 C -0.18 -5.52 6.01 -10.79 -0.06 -5.59 16 27 C -0.17 -4.37 10.18 30.61 0.31 -4.06 16 28 C -0.16 -3.58 10.25 30.62 0.31 -3.27 16 29 H 0.10 2.53 8.14 -2.39 -0.02 2.51 16 30 H 0.06 2.00 7.27 -2.39 -0.02 1.99 16 31 H 0.10 2.40 8.14 -2.39 -0.02 2.38 16 32 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 33 H 0.10 1.34 8.07 -2.39 -0.02 1.32 16 34 H 0.06 1.43 7.39 -2.39 -0.02 1.41 16 35 H 0.05 1.22 8.14 -2.39 -0.02 1.20 16 36 H 0.09 1.31 8.02 -2.38 -0.02 1.29 16 37 H 0.10 2.43 5.26 -2.75 -0.01 2.41 16 38 H 0.15 5.20 7.65 -2.91 -0.02 5.17 16 39 H 0.15 5.16 7.37 -2.91 -0.02 5.14 16 40 H 0.02 1.21 8.07 -2.39 -0.02 1.19 16 41 H 0.04 1.77 4.56 -2.39 -0.01 1.76 16 42 H 0.27 14.12 8.31 -92.70 -0.77 13.35 16 43 H 0.08 2.74 8.11 -2.39 -0.02 2.72 16 44 H 0.08 2.65 7.09 -2.39 -0.02 2.64 16 45 H 0.09 2.96 8.14 -2.39 -0.02 2.94 16 46 H 0.09 2.42 8.04 -2.39 -0.02 2.40 16 47 H 0.10 2.28 8.14 -2.39 -0.02 2.26 16 48 H 0.11 2.14 8.14 -2.39 -0.02 2.12 16 49 H 0.10 2.17 8.14 -2.39 -0.02 2.15 16 Total: -1.00 -64.52 406.49 4.64 -59.88 By element: Atomic # 1 Polarization: 27.14 SS G_CDS: 0.95 Total: 28.09 kcal Atomic # 6 Polarization: 15.97 SS G_CDS: 7.41 Total: 23.38 kcal Atomic # 7 Polarization: -104.35 SS G_CDS: -5.64 Total: -109.98 kcal Atomic # 8 Polarization: -45.38 SS G_CDS: -0.12 Total: -45.50 kcal Atomic # 14 Polarization: 42.11 SS G_CDS: 2.03 Total: 44.13 kcal Total: -64.52 4.64 -59.88 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000104414205.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.485 kcal (2) G-P(sol) polarization free energy of solvation -64.517 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.032 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.636 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.881 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.396 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds