Wall clock time and date at job start Wed Apr 1 2020 04:28:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42889 * 1 3 3 C 1.42909 * 114.00187 * 2 1 4 4 C 1.53000 * 109.47269 * 180.02562 * 3 2 1 5 5 N 1.46496 * 109.46875 * 179.97438 * 4 3 2 6 6 C 1.36536 * 124.76917 * 90.02388 * 5 4 3 7 7 C 1.50692 * 125.38511 * 359.96389 * 6 5 4 8 8 C 1.34328 * 109.23184 * 179.97438 * 6 5 4 9 9 C 1.46966 * 106.38075 * 0.02562 * 8 6 5 10 10 C 1.41846 * 127.08293 * 179.97438 * 9 8 6 11 11 C 1.38076 * 119.99782 * 343.78697 * 10 9 8 12 12 C 1.43197 * 120.00304 * 359.28246 * 11 10 9 13 13 N 8.24189 * 116.80959 * 11.34124 * 2 1 3 14 14 C 1.46953 * 119.99835 * 179.55944 * 11 10 9 15 15 O 1.21677 * 119.99810 * 353.01104 * 14 11 10 16 16 N 1.34773 * 120.00378 * 173.00986 * 14 11 10 17 17 C 1.46504 * 119.99380 * 358.52247 * 16 14 11 18 18 C 1.46497 * 120.00366 * 178.52379 * 16 14 11 19 19 C 1.50695 * 109.47107 * 90.00012 * 18 16 14 20 20 H 1.07999 * 120.00165 * 359.97438 * 19 18 16 21 21 C 1.37878 * 120.00046 * 180.02562 * 19 18 16 22 22 N 1.31522 * 119.99788 * 0.02562 * 21 19 18 23 23 Si 1.86795 * 120.00270 * 179.97438 * 21 19 18 24 24 H 1.48496 * 109.47200 * 0.02562 * 23 21 19 25 25 H 1.48509 * 109.47008 * 120.00116 * 23 21 19 26 26 H 1.48501 * 109.47268 * 239.99882 * 23 21 19 27 27 C 1.34575 * 124.77764 * 270.31595 * 5 4 3 28 28 C 1.50705 * 125.95032 * 0.02562 * 27 5 4 29 29 H 1.08997 * 109.47364 * 60.00060 * 1 2 3 30 30 H 1.09003 * 109.47452 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.47098 * 299.99751 * 1 2 3 32 32 H 1.09001 * 109.46885 * 59.99959 * 3 2 1 33 33 H 1.09000 * 109.46789 * 300.00168 * 3 2 1 34 34 H 1.09001 * 109.47272 * 60.00108 * 4 3 2 35 35 H 1.09000 * 109.47280 * 299.99779 * 4 3 2 36 36 H 1.09004 * 109.46686 * 269.99562 * 7 6 5 37 37 H 1.08997 * 109.47683 * 29.99490 * 7 6 5 38 38 H 1.09003 * 109.47417 * 149.99785 * 7 6 5 39 39 H 1.08002 * 126.81129 * 180.02562 * 8 6 5 40 40 H 1.08001 * 119.99632 * 163.78003 * 10 9 8 41 41 H 1.09002 * 109.47026 * 83.62809 * 17 16 14 42 42 H 1.09006 * 109.46730 * 203.62331 * 17 16 14 43 43 H 1.09000 * 109.47420 * 323.61883 * 17 16 14 44 44 H 1.09002 * 109.47226 * 209.99952 * 18 16 14 45 45 H 1.09002 * 109.46703 * 329.99596 * 18 16 14 46 46 H 0.97001 * 119.99934 * 180.02562 * 22 21 19 47 47 H 1.09003 * 109.47079 * 270.21938 * 28 27 5 48 48 H 1.08999 * 109.46683 * 30.22250 * 28 27 5 49 49 H 1.08996 * 109.47207 * 150.21875 * 28 27 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 7 4.1312 2.5230 -0.0013 6 6 4.4488 3.2345 1.1200 7 6 4.2412 2.7675 2.5376 8 6 4.9754 4.4165 0.7596 9 6 4.9828 4.4362 -0.7099 10 6 5.4473 5.4814 -1.5489 11 6 5.6453 6.7459 -1.0311 12 6 5.3672 7.0061 0.3493 13 7 5.1462 7.2123 1.4466 14 6 6.1358 7.8264 -1.8981 15 8 6.4880 7.5804 -3.0365 16 7 6.1956 9.0896 -1.4324 17 6 5.7411 9.3912 -0.0726 18 6 6.7148 10.1612 -2.2857 19 6 5.5823 10.7720 -3.0702 20 1 4.5765 10.3990 -2.9459 21 6 5.8305 11.8063 -3.9474 22 7 7.0557 12.2596 -4.0999 23 14 4.4269 12.5630 -4.9204 24 1 3.1565 11.8785 -4.5702 25 1 4.3179 14.0069 -4.5906 26 1 4.6904 12.4056 -6.3733 27 6 4.4374 3.2265 -1.1069 28 6 4.2268 2.7751 -2.5293 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.6886 1.8464 0.8900 33 1 1.6885 1.8464 -0.8900 34 1 3.8567 0.6440 -0.8909 35 1 3.8574 0.6437 0.8891 36 1 3.2525 3.0735 2.8798 37 1 4.3194 1.6811 2.5776 38 1 5.0015 3.2104 3.1811 39 1 5.3242 5.1975 1.4190 40 1 5.6461 5.2879 -2.5927 41 1 6.5443 9.1811 0.6338 42 1 5.4654 10.4437 -0.0067 43 1 4.8757 8.7732 0.1667 44 1 7.1810 10.9264 -1.6650 45 1 7.4542 9.7515 -2.9739 46 1 7.2302 12.9875 -4.7168 47 1 5.1132 2.2446 -2.8771 48 1 3.3640 2.1106 -2.5756 49 1 4.0508 3.6437 -3.1638 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000192733776.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:28:51 Heat of formation + Delta-G solvation = 15.348071 kcal Electronic energy + Delta-G solvation = -29665.138400 eV Core-core repulsion = 25594.268640 eV Total energy + Delta-G solvation = -4070.869759 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -42.61346 -40.87808 -38.97946 -38.14494 -36.74009 -35.44830 -34.64975 -34.08324 -33.01049 -30.38047 -30.12991 -29.34948 -27.63960 -27.15777 -26.48705 -25.04541 -24.25783 -23.44696 -21.57316 -21.31681 -19.56803 -18.67623 -18.37046 -17.86229 -17.25521 -17.18898 -16.98232 -16.54781 -16.40397 -16.30289 -15.95893 -15.52093 -15.39243 -15.12926 -14.64015 -14.40129 -14.30810 -14.15212 -14.13756 -14.12961 -13.83286 -13.82285 -13.53860 -13.46170 -13.37503 -13.19960 -12.92828 -12.88166 -12.69957 -12.58969 -12.51144 -12.39256 -12.21798 -12.17317 -11.97028 -11.65828 -11.15446 -10.78643 -10.71214 -10.61386 -9.55914 -9.37770 -8.65717 -8.18757 -6.33779 -0.53614 1.13665 1.39589 1.41478 1.54093 1.54973 1.64157 1.76901 1.83906 2.29118 2.46515 2.77892 2.83475 3.03119 3.10050 3.55613 3.66561 3.73454 3.79893 3.85866 4.02314 4.14107 4.16644 4.26191 4.34910 4.42575 4.44174 4.46092 4.49235 4.58291 4.65180 4.70553 4.72214 4.74936 4.77559 4.83702 4.85821 5.02026 5.03407 5.11175 5.19812 5.28059 5.30710 5.55451 5.73252 5.81731 5.98797 6.00915 6.08099 6.20950 6.49856 6.66856 6.75338 7.27443 7.42816 8.88359 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.015417 B = 0.002279 C = 0.002144 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1815.720101 B =12284.314310 C =13056.060678 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.402 6.402 3 C 0.049 3.951 4 C 0.097 3.903 5 N -0.423 5.423 6 C 0.014 3.986 7 C -0.084 4.084 8 C -0.194 4.194 9 C -0.236 4.236 10 C 0.147 3.853 11 C -0.200 4.200 12 C 0.303 3.697 13 N -0.467 5.467 14 C 0.563 3.437 15 O -0.579 6.579 16 N -0.607 5.607 17 C 0.076 3.924 18 C 0.260 3.740 19 C -0.541 4.541 20 H 0.052 0.948 21 C 0.007 3.993 22 N -0.928 5.928 23 Si 0.971 3.029 24 H -0.268 1.268 25 H -0.272 1.272 26 H -0.277 1.277 27 C 0.124 3.876 28 C -0.103 4.103 29 H 0.049 0.951 30 H 0.103 0.897 31 H 0.047 0.953 32 H 0.054 0.946 33 H 0.059 0.941 34 H 0.121 0.879 35 H 0.116 0.884 36 H 0.078 0.922 37 H 0.087 0.913 38 H 0.080 0.920 39 H 0.138 0.862 40 H 0.165 0.835 41 H 0.056 0.944 42 H 0.073 0.927 43 H 0.077 0.923 44 H 0.021 0.979 45 H 0.011 0.989 46 H 0.268 0.732 47 H 0.105 0.895 48 H 0.092 0.908 49 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.271 -30.141 10.297 34.134 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.320 6.320 3 C -0.029 4.029 4 C -0.024 4.024 5 N -0.099 5.099 6 C -0.093 4.093 7 C -0.142 4.142 8 C -0.217 4.217 9 C -0.242 4.242 10 C 0.122 3.878 11 C -0.209 4.209 12 C -0.007 4.007 13 N -0.147 5.147 14 C 0.353 3.647 15 O -0.461 6.461 16 N -0.337 5.337 17 C -0.067 4.067 18 C 0.139 3.861 19 C -0.579 4.579 20 H 0.071 0.929 21 C -0.192 4.192 22 N -0.567 5.567 23 Si 0.795 3.205 24 H -0.192 1.192 25 H -0.197 1.197 26 H -0.202 1.202 27 C 0.004 3.996 28 C -0.160 4.160 29 H 0.068 0.932 30 H 0.121 0.879 31 H 0.066 0.934 32 H 0.072 0.928 33 H 0.077 0.923 34 H 0.139 0.861 35 H 0.134 0.866 36 H 0.096 0.904 37 H 0.105 0.895 38 H 0.099 0.901 39 H 0.155 0.845 40 H 0.182 0.818 41 H 0.074 0.926 42 H 0.092 0.908 43 H 0.095 0.905 44 H 0.039 0.961 45 H 0.029 0.971 46 H 0.076 0.924 47 H 0.123 0.877 48 H 0.111 0.889 49 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -12.358 -30.273 11.398 34.628 hybrid contribution -0.290 1.420 -0.796 1.654 sum -12.648 -28.853 10.603 33.240 Atomic orbital electron populations 1.22960 0.78881 1.04232 1.00886 1.87768 1.21746 1.26881 1.95651 1.22740 0.92957 0.85485 1.01674 1.21862 0.92140 0.80560 1.07798 1.43635 1.46599 1.14897 1.04766 1.20552 1.05805 0.92930 0.89996 1.20440 1.03387 1.02484 0.87839 1.22597 1.06479 0.98548 0.94114 1.18626 1.15967 0.96488 0.93155 1.21448 0.79762 0.87255 0.99302 1.17874 1.20325 0.95877 0.86776 1.25096 0.93042 0.90063 0.92464 1.81265 1.10913 1.10595 1.11926 1.17976 0.78144 0.82331 0.86255 1.90731 1.52001 1.83372 1.20025 1.48018 1.62288 1.08196 1.15234 1.22295 0.99367 1.02909 0.82164 1.18862 0.94124 0.84060 0.89084 1.21693 0.94527 1.17375 1.24339 0.92931 1.25878 0.98645 0.97063 0.97612 1.70065 1.21173 1.27865 1.37641 0.85323 0.78851 0.78164 0.78195 1.19191 1.19682 1.20230 1.21455 0.97458 0.90000 0.90641 1.20787 1.04692 1.03933 0.86622 0.93203 0.87865 0.93390 0.92752 0.92260 0.86079 0.86606 0.90375 0.89458 0.90077 0.84494 0.81808 0.92561 0.90782 0.90452 0.96054 0.97126 0.92351 0.87695 0.88901 0.88734 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.17 11.01 113.37 1.25 1.42 16 2 O -0.40 -4.18 10.70 -148.98 -1.59 -5.78 16 3 C 0.05 0.44 6.26 71.98 0.45 0.89 16 4 C 0.10 0.77 5.73 86.38 0.49 1.27 16 5 N -0.42 -6.06 2.68 -494.06 -1.33 -7.38 16 6 C 0.01 0.25 6.84 40.93 0.28 0.53 16 7 C -0.08 -1.03 10.04 71.23 0.72 -0.32 16 8 C -0.19 -4.86 9.40 23.66 0.22 -4.64 16 9 C -0.24 -5.64 5.95 -20.03 -0.12 -5.76 16 10 C 0.15 4.11 9.20 23.12 0.21 4.32 16 11 C -0.20 -7.10 5.87 -19.79 -0.12 -7.21 16 12 C 0.30 10.39 7.82 88.31 0.69 11.08 16 13 N -0.47 -16.01 15.67 19.03 0.30 -15.71 16 14 C 0.56 25.70 7.62 86.53 0.66 26.36 16 15 O -0.58 -29.98 15.91 -4.28 -0.07 -30.05 16 16 N -0.61 -29.25 2.86 -855.56 -2.44 -31.70 16 17 C 0.08 3.06 8.68 127.77 1.11 4.16 16 18 C 0.26 14.81 5.12 85.63 0.44 15.25 16 19 C -0.54 -32.36 9.39 25.60 0.24 -32.12 16 20 H 0.05 3.14 7.81 -2.91 -0.02 3.11 16 21 C 0.01 0.41 5.46 84.65 0.46 0.87 16 22 N -0.93 -57.07 13.29 21.45 0.28 -56.79 16 23 Si 0.97 45.80 29.54 68.60 2.03 47.83 16 24 H -0.27 -12.28 7.11 99.48 0.71 -11.58 16 25 H -0.27 -12.19 7.11 99.48 0.71 -11.49 16 26 H -0.28 -12.73 7.11 99.48 0.71 -12.03 16 27 C 0.12 2.05 6.95 42.21 0.29 2.35 16 28 C -0.10 -0.98 9.61 71.24 0.68 -0.29 16 29 H 0.05 0.28 8.14 -2.39 -0.02 0.26 16 30 H 0.10 0.40 8.14 -2.39 -0.02 0.38 16 31 H 0.05 0.27 8.14 -2.39 -0.02 0.26 16 32 H 0.05 0.54 8.14 -2.39 -0.02 0.52 16 33 H 0.06 0.54 8.11 -2.39 -0.02 0.52 16 34 H 0.12 0.59 7.51 -2.39 -0.02 0.58 16 35 H 0.12 0.68 6.88 -2.39 -0.02 0.66 16 36 H 0.08 0.88 8.14 -2.38 -0.02 0.86 16 37 H 0.09 0.66 6.92 -2.39 -0.02 0.65 16 38 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 39 H 0.14 3.96 4.73 -2.91 -0.01 3.95 16 40 H 0.16 4.11 7.47 -2.91 -0.02 4.09 16 41 H 0.06 2.10 7.70 -2.39 -0.02 2.08 16 42 H 0.07 2.96 8.02 -2.38 -0.02 2.95 16 43 H 0.08 2.94 4.53 -2.39 -0.01 2.93 16 44 H 0.02 1.24 8.07 -2.39 -0.02 1.22 16 45 H 0.01 0.68 7.44 -2.39 -0.02 0.66 16 46 H 0.27 15.32 8.31 -92.71 -0.77 14.55 16 47 H 0.10 0.70 8.14 -2.39 -0.02 0.68 16 48 H 0.09 0.51 7.57 -2.39 -0.02 0.49 16 49 H 0.09 0.98 7.83 -2.39 -0.02 0.96 16 Total: -1.00 -79.24 408.81 6.11 -73.14 By element: Atomic # 1 Polarization: 7.32 SS G_CDS: 0.96 Total: 8.28 kcal Atomic # 6 Polarization: 10.19 SS G_CDS: 7.97 Total: 18.16 kcal Atomic # 7 Polarization: -108.39 SS G_CDS: -3.19 Total: -111.57 kcal Atomic # 8 Polarization: -34.17 SS G_CDS: -1.66 Total: -35.83 kcal Atomic # 14 Polarization: 45.80 SS G_CDS: 2.03 Total: 47.83 kcal Total: -79.24 6.11 -73.14 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000192733776.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.483 kcal (2) G-P(sol) polarization free energy of solvation -79.243 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.240 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.108 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.135 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.348 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds