Wall clock time and date at job start Wed Apr 1 2020 04:29:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42897 * 113.99889 * 2 1 4 4 C 1.53004 * 109.47236 * 179.97438 * 3 2 1 5 5 N 1.46499 * 109.46887 * 180.02562 * 4 3 2 6 6 C 1.36534 * 124.77632 * 90.03255 * 5 4 3 7 7 C 1.50705 * 125.38171 * 0.02562 * 6 5 4 8 8 C 1.34323 * 109.23342 * 179.97438 * 6 5 4 9 9 C 1.46968 * 106.38391 * 359.97438 * 8 6 5 10 10 C 1.41836 * 127.07995 * 179.97438 * 9 8 6 11 11 C 1.38081 * 120.00279 * 16.90676 * 10 9 8 12 12 C 1.43198 * 119.99881 * 6.83691 * 11 10 9 13 13 N 8.60487 * 131.78452 * 12.30138 * 2 1 3 14 14 C 1.46945 * 120.00080 * 186.83043 * 11 10 9 15 15 O 1.21672 * 119.99818 * 0.02562 * 14 11 10 16 16 N 1.34775 * 120.00296 * 179.97438 * 14 11 10 17 17 C 1.46502 * 120.00323 * 180.02562 * 16 14 11 18 18 H 1.08998 * 109.46449 * 325.00124 * 17 16 14 19 19 C 1.52996 * 109.46964 * 85.00048 * 17 16 14 20 20 C 1.50701 * 109.46972 * 205.00251 * 17 16 14 21 21 H 1.07998 * 120.00107 * 359.97438 * 20 17 16 22 22 C 1.37871 * 119.99682 * 179.97438 * 20 17 16 23 23 N 1.31515 * 120.00250 * 0.02562 * 22 20 17 24 24 Si 1.86800 * 119.99819 * 179.97438 * 22 20 17 25 25 H 1.48502 * 109.46921 * 90.00458 * 24 22 20 26 26 H 1.48503 * 109.47121 * 210.00125 * 24 22 20 27 27 H 1.48497 * 109.47233 * 329.99980 * 24 22 20 28 28 C 1.34571 * 124.77154 * 269.72133 * 5 4 3 29 29 C 1.50705 * 125.95509 * 359.97438 * 28 5 4 30 30 H 1.09000 * 109.46871 * 60.00068 * 1 2 3 31 31 H 1.08999 * 109.46593 * 179.97438 * 1 2 3 32 32 H 1.08993 * 109.47205 * 299.99616 * 1 2 3 33 33 H 1.08998 * 109.47593 * 300.00523 * 3 2 1 34 34 H 1.09009 * 109.46833 * 59.99998 * 3 2 1 35 35 H 1.08997 * 109.47184 * 300.00422 * 4 3 2 36 36 H 1.09000 * 109.46825 * 60.00540 * 4 3 2 37 37 H 1.08997 * 109.46651 * 90.00194 * 7 6 5 38 38 H 1.08991 * 109.47358 * 210.00568 * 7 6 5 39 39 H 1.09001 * 109.46792 * 330.00440 * 7 6 5 40 40 H 1.08001 * 126.80429 * 180.02562 * 8 6 5 41 41 H 1.07997 * 119.99719 * 196.90672 * 10 9 8 42 42 H 0.97002 * 119.99603 * 0.02562 * 16 14 11 43 43 H 1.08997 * 109.47019 * 179.97438 * 19 17 16 44 44 H 1.08999 * 109.47284 * 300.00066 * 19 17 16 45 45 H 1.09004 * 109.47234 * 60.00019 * 19 17 16 46 46 H 0.97004 * 120.00318 * 180.02562 * 23 22 20 47 47 H 1.08998 * 109.46495 * 89.99595 * 29 28 5 48 48 H 1.08991 * 109.47495 * 210.00328 * 29 28 5 49 49 H 1.09006 * 109.46904 * 330.00367 * 29 28 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1847 0.0006 5 7 4.1312 2.5231 0.0013 6 6 4.4480 3.2340 1.1231 7 6 4.2406 2.7657 2.5404 8 6 4.9748 4.4162 0.7637 9 6 4.9843 4.4362 -0.7058 10 6 5.4498 5.4816 -1.5438 11 6 6.2686 6.4669 -1.0285 12 6 6.7668 6.3565 0.3094 13 7 7.1627 6.2690 1.3670 14 6 6.6287 7.6286 -1.8532 15 8 6.2051 7.7225 -2.9899 16 7 7.4274 8.5906 -1.3501 17 6 7.7860 9.7490 -2.1721 18 1 7.8913 9.4383 -3.2115 19 6 6.6883 10.8094 -2.0654 20 6 9.0905 10.3257 -1.6855 21 1 9.6012 9.8747 -0.8476 22 6 9.6321 11.4291 -2.3101 23 7 9.0100 11.9786 -3.3302 24 14 11.2487 12.1443 -1.7066 25 1 12.3756 11.4948 -2.4233 26 1 11.2720 13.6058 -1.9688 27 1 11.3838 11.9009 -0.2479 28 6 4.4487 3.2223 -1.1038 29 6 4.2539 2.7652 -2.5266 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3632 -1.0277 -0.0005 32 1 -0.3633 0.5137 0.8900 33 1 1.6886 1.8464 -0.8899 34 1 1.6885 1.8463 0.8901 35 1 3.8568 0.6439 0.8908 36 1 3.8574 0.6437 -0.8892 37 1 5.1296 2.2353 2.8815 38 1 4.0612 3.6262 3.1848 39 1 3.3809 2.0968 2.5799 40 1 5.3230 5.1968 1.4238 41 1 5.1639 5.5069 -2.5849 42 1 7.7648 8.5159 -0.4437 43 1 6.9553 11.6715 -2.6766 44 1 5.7447 10.3923 -2.4173 45 1 6.5829 11.1201 -1.0259 46 1 9.3912 12.7547 -3.7700 47 1 3.2679 3.0725 -2.8750 48 1 5.0192 3.2132 -3.1602 49 1 4.3335 1.6791 -2.5734 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000194648772.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:29:04 Heat of formation + Delta-G solvation = 5.811698 kcal Electronic energy + Delta-G solvation = -29243.531770 eV Core-core repulsion = 25172.248483 eV Total energy + Delta-G solvation = -4071.283287 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.80059 -39.01908 -38.52251 -36.67876 -34.98807 -34.40120 -33.37923 -32.35620 -32.05676 -29.64827 -29.36825 -28.49009 -26.72078 -25.55023 -25.16626 -23.96587 -22.83489 -21.54345 -20.41886 -19.88212 -19.01001 -17.71439 -17.31482 -16.71972 -16.54271 -16.11799 -15.75273 -15.31596 -14.94616 -14.83669 -14.68696 -14.41743 -14.23450 -13.86076 -13.69719 -13.59772 -13.25760 -13.06158 -12.99651 -12.93475 -12.91238 -12.61230 -12.37058 -12.20924 -12.18727 -12.11275 -11.81703 -11.72767 -11.61928 -11.42188 -11.02168 -10.92881 -10.69210 -10.38464 -10.26428 -10.16950 -10.09322 -9.14246 -8.98139 -8.55656 -8.48803 -7.94753 -7.62203 -6.06319 -4.14723 0.57853 1.93698 2.21101 2.81816 2.99811 3.28735 3.29799 3.30295 3.36291 3.39649 4.02938 4.12029 4.21245 4.26483 4.31707 4.34480 4.45807 4.48633 4.58252 4.69723 4.73756 4.76226 4.87362 4.95648 4.99500 5.08535 5.18029 5.22822 5.25187 5.26765 5.29887 5.51530 5.54196 5.60236 5.80092 5.87858 6.25193 6.29551 6.38320 6.64909 6.83713 6.90561 6.93882 7.04137 7.21767 7.50083 7.62300 7.76226 7.79536 7.98233 8.21101 8.71368 8.83509 9.14085 9.52247 10.99658 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.024110 B = 0.001966 C = 0.001880 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1161.083786 B =14236.179463 C =14890.088688 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.390 6.390 3 C 0.047 3.953 4 C 0.100 3.900 5 N -0.430 5.430 6 C 0.008 3.992 7 C -0.085 4.085 8 C -0.160 4.160 9 C -0.191 4.191 10 C 0.094 3.906 11 C -0.148 4.148 12 C 0.272 3.728 13 N -0.438 5.438 14 C 0.560 3.440 15 O -0.552 6.552 16 N -0.702 5.702 17 C 0.264 3.736 18 H 0.053 0.947 19 C -0.147 4.147 20 C -0.532 4.532 21 H 0.060 0.940 22 C 0.067 3.933 23 N -0.883 5.883 24 Si 0.901 3.099 25 H -0.279 1.279 26 H -0.285 1.285 27 H -0.274 1.274 28 C 0.087 3.913 29 C -0.097 4.097 30 H 0.045 0.955 31 H 0.090 0.910 32 H 0.044 0.956 33 H 0.059 0.941 34 H 0.058 0.942 35 H 0.101 0.899 36 H 0.102 0.898 37 H 0.072 0.928 38 H 0.082 0.918 39 H 0.062 0.938 40 H 0.151 0.849 41 H 0.153 0.847 42 H 0.388 0.612 43 H 0.091 0.909 44 H 0.017 0.983 45 H 0.026 0.974 46 H 0.264 0.736 47 H 0.082 0.918 48 H 0.093 0.907 49 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.166 -25.390 6.418 31.313 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.308 6.308 3 C -0.031 4.031 4 C -0.022 4.022 5 N -0.107 5.107 6 C -0.098 4.098 7 C -0.143 4.143 8 C -0.183 4.183 9 C -0.198 4.198 10 C 0.069 3.931 11 C -0.155 4.155 12 C -0.041 4.041 13 N -0.115 5.115 14 C 0.345 3.655 15 O -0.433 6.433 16 N -0.348 5.348 17 C 0.162 3.838 18 H 0.071 0.929 19 C -0.206 4.206 20 C -0.571 4.571 21 H 0.079 0.921 22 C -0.136 4.136 23 N -0.521 5.521 24 Si 0.728 3.272 25 H -0.206 1.206 26 H -0.211 1.211 27 H -0.199 1.199 28 C -0.030 4.030 29 C -0.154 4.154 30 H 0.064 0.936 31 H 0.109 0.891 32 H 0.063 0.937 33 H 0.078 0.922 34 H 0.076 0.924 35 H 0.119 0.881 36 H 0.120 0.880 37 H 0.091 0.909 38 H 0.101 0.899 39 H 0.081 0.919 40 H 0.169 0.831 41 H 0.171 0.829 42 H 0.220 0.780 43 H 0.109 0.891 44 H 0.036 0.964 45 H 0.045 0.955 46 H 0.074 0.926 47 H 0.100 0.900 48 H 0.111 0.889 49 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -16.837 -25.717 7.148 31.559 hybrid contribution 0.664 0.716 0.452 1.075 sum -16.174 -25.002 7.600 30.732 Atomic orbital electron populations 1.22800 0.79894 1.03216 1.00451 1.87799 1.20602 1.26791 1.95577 1.22798 0.92978 0.85520 1.01780 1.21603 0.92278 0.82293 1.06057 1.43358 1.47627 1.14295 1.05457 1.20202 1.07612 0.93581 0.88430 1.20354 1.01989 1.02164 0.89765 1.22402 1.04566 0.97473 0.93878 1.18604 1.12448 0.95625 0.93122 1.21224 0.86240 0.87092 0.98525 1.18490 1.07749 1.00883 0.88416 1.25427 0.92862 0.93104 0.92678 1.81018 1.10017 1.08566 1.11901 1.17517 0.79802 0.81966 0.86200 1.90766 1.55480 1.78850 1.18175 1.46490 1.47639 1.22965 1.17714 1.18800 0.92889 0.80313 0.91778 0.92933 1.22078 0.96483 1.02077 0.99940 1.21229 1.05613 1.13432 1.16819 0.92146 1.24862 0.97657 0.96329 0.94779 1.69902 1.38537 1.22418 1.21256 0.86458 0.83412 0.78171 0.79132 1.20552 1.21081 1.19882 1.20962 1.00804 0.92198 0.89012 1.20547 1.04068 1.01719 0.89067 0.93649 0.89104 0.93743 0.92229 0.92373 0.88098 0.87973 0.90910 0.89942 0.91893 0.83124 0.82938 0.77998 0.89077 0.96398 0.95510 0.92627 0.89952 0.88868 0.91119 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.13 11.01 101.05 1.11 1.25 16 2 O -0.39 -2.51 10.70 -35.23 -0.38 -2.88 16 3 C 0.05 0.27 6.26 37.16 0.23 0.50 16 4 C 0.10 0.58 5.73 -4.04 -0.02 0.56 16 5 N -0.43 -3.70 2.68 -107.51 -0.29 -3.99 16 6 C 0.01 0.08 6.84 -81.88 -0.56 -0.48 16 7 C -0.09 -0.63 9.79 36.01 0.35 -0.27 16 8 C -0.16 -2.04 9.37 -37.43 -0.35 -2.39 16 9 C -0.19 -2.34 5.91 -104.88 -0.62 -2.96 16 10 C 0.09 1.27 9.19 -38.26 -0.35 0.92 16 11 C -0.15 -2.45 5.90 -104.50 -0.62 -3.06 16 12 C 0.27 4.58 10.94 -22.58 -0.25 4.34 16 13 N -0.44 -7.67 17.23 41.71 0.72 -6.95 16 14 C 0.56 11.58 7.71 -12.74 -0.10 11.49 16 15 O -0.55 -12.78 15.97 5.21 0.08 -12.69 16 16 N -0.70 -15.73 5.02 -56.16 -0.28 -16.01 16 17 C 0.26 6.91 2.56 -69.08 -0.18 6.73 16 18 H 0.05 1.54 7.58 -51.93 -0.39 1.15 16 19 C -0.15 -3.74 9.26 37.16 0.34 -3.40 16 20 C -0.53 -14.63 8.73 -34.44 -0.30 -14.93 16 21 H 0.06 1.62 7.74 -52.49 -0.41 1.22 16 22 C 0.07 1.84 5.30 -17.82 -0.09 1.74 16 23 N -0.88 -25.16 11.32 55.43 0.63 -24.53 16 24 Si 0.90 21.26 29.54 -169.99 -5.02 16.24 16 25 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 26 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 27 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 28 C 0.09 0.82 6.95 -81.28 -0.56 0.25 16 29 C -0.10 -0.60 9.88 36.01 0.36 -0.25 16 30 H 0.04 0.16 8.14 -51.93 -0.42 -0.27 16 31 H 0.09 0.26 8.14 -51.93 -0.42 -0.17 16 32 H 0.04 0.16 8.14 -51.93 -0.42 -0.27 16 33 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 34 H 0.06 0.34 8.14 -51.92 -0.42 -0.08 16 35 H 0.10 0.53 7.49 -51.93 -0.39 0.14 16 36 H 0.10 0.49 6.87 -51.93 -0.36 0.13 16 37 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 38 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 39 H 0.06 0.36 7.57 -51.93 -0.39 -0.04 16 40 H 0.15 2.14 5.17 -52.49 -0.27 1.87 16 41 H 0.15 1.84 7.50 -52.49 -0.39 1.45 16 42 H 0.39 8.18 7.41 -40.82 -0.30 7.88 16 43 H 0.09 2.49 6.07 -51.93 -0.32 2.17 16 44 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 45 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 46 H 0.26 7.11 8.31 -40.82 -0.34 6.78 16 47 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 48 H 0.09 0.58 7.85 -51.93 -0.41 0.17 16 49 H 0.07 0.33 6.92 -51.93 -0.36 -0.03 16 LS Contribution 413.00 15.07 6.22 6.22 Total: -1.00 -33.22 413.00 -7.27 -40.49 By element: Atomic # 1 Polarization: 11.42 SS G_CDS: -7.35 Total: 4.07 kcal Atomic # 6 Polarization: 1.64 SS G_CDS: -1.61 Total: 0.04 kcal Atomic # 7 Polarization: -52.26 SS G_CDS: 0.78 Total: -51.48 kcal Atomic # 8 Polarization: -15.28 SS G_CDS: -0.29 Total: -15.58 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.24 kcal Total LS contribution 6.22 Total: 6.22 kcal Total: -33.22 -7.27 -40.49 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000194648772.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.306 kcal (2) G-P(sol) polarization free energy of solvation -33.222 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.084 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.272 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.494 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.812 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds