Wall clock time and date at job start Wed Apr 1 2020 04:29:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42897 * 113.99889 * 2 1 4 4 C 1.53004 * 109.47236 * 179.97438 * 3 2 1 5 5 N 1.46499 * 109.46887 * 180.02562 * 4 3 2 6 6 C 1.36534 * 124.77632 * 90.03255 * 5 4 3 7 7 C 1.50705 * 125.38171 * 0.02562 * 6 5 4 8 8 C 1.34323 * 109.23342 * 179.97438 * 6 5 4 9 9 C 1.46968 * 106.38391 * 359.97438 * 8 6 5 10 10 C 1.41836 * 127.07995 * 179.97438 * 9 8 6 11 11 C 1.38081 * 120.00279 * 16.90676 * 10 9 8 12 12 C 1.43198 * 119.99881 * 6.83691 * 11 10 9 13 13 N 8.60487 * 131.78452 * 12.30138 * 2 1 3 14 14 C 1.46945 * 120.00080 * 186.83043 * 11 10 9 15 15 O 1.21672 * 119.99818 * 0.02562 * 14 11 10 16 16 N 1.34775 * 120.00296 * 179.97438 * 14 11 10 17 17 C 1.46502 * 120.00323 * 180.02562 * 16 14 11 18 18 H 1.08998 * 109.46449 * 325.00124 * 17 16 14 19 19 C 1.52996 * 109.46964 * 85.00048 * 17 16 14 20 20 C 1.50701 * 109.46972 * 205.00251 * 17 16 14 21 21 H 1.07998 * 120.00107 * 359.97438 * 20 17 16 22 22 C 1.37871 * 119.99682 * 179.97438 * 20 17 16 23 23 N 1.31515 * 120.00250 * 0.02562 * 22 20 17 24 24 Si 1.86800 * 119.99819 * 179.97438 * 22 20 17 25 25 H 1.48502 * 109.46921 * 90.00458 * 24 22 20 26 26 H 1.48503 * 109.47121 * 210.00125 * 24 22 20 27 27 H 1.48497 * 109.47233 * 329.99980 * 24 22 20 28 28 C 1.34571 * 124.77154 * 269.72133 * 5 4 3 29 29 C 1.50705 * 125.95509 * 359.97438 * 28 5 4 30 30 H 1.09000 * 109.46871 * 60.00068 * 1 2 3 31 31 H 1.08999 * 109.46593 * 179.97438 * 1 2 3 32 32 H 1.08993 * 109.47205 * 299.99616 * 1 2 3 33 33 H 1.08998 * 109.47593 * 300.00523 * 3 2 1 34 34 H 1.09009 * 109.46833 * 59.99998 * 3 2 1 35 35 H 1.08997 * 109.47184 * 300.00422 * 4 3 2 36 36 H 1.09000 * 109.46825 * 60.00540 * 4 3 2 37 37 H 1.08997 * 109.46651 * 90.00194 * 7 6 5 38 38 H 1.08991 * 109.47358 * 210.00568 * 7 6 5 39 39 H 1.09001 * 109.46792 * 330.00440 * 7 6 5 40 40 H 1.08001 * 126.80429 * 180.02562 * 8 6 5 41 41 H 1.07997 * 119.99719 * 196.90672 * 10 9 8 42 42 H 0.97002 * 119.99603 * 0.02562 * 16 14 11 43 43 H 1.08997 * 109.47019 * 179.97438 * 19 17 16 44 44 H 1.08999 * 109.47284 * 300.00066 * 19 17 16 45 45 H 1.09004 * 109.47234 * 60.00019 * 19 17 16 46 46 H 0.97004 * 120.00318 * 180.02562 * 23 22 20 47 47 H 1.08998 * 109.46495 * 89.99595 * 29 28 5 48 48 H 1.08991 * 109.47495 * 210.00328 * 29 28 5 49 49 H 1.09006 * 109.46904 * 330.00367 * 29 28 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1847 0.0006 5 7 4.1312 2.5231 0.0013 6 6 4.4480 3.2340 1.1231 7 6 4.2406 2.7657 2.5404 8 6 4.9748 4.4162 0.7637 9 6 4.9843 4.4362 -0.7058 10 6 5.4498 5.4816 -1.5438 11 6 6.2686 6.4669 -1.0285 12 6 6.7668 6.3565 0.3094 13 7 7.1627 6.2690 1.3670 14 6 6.6287 7.6286 -1.8532 15 8 6.2051 7.7225 -2.9899 16 7 7.4274 8.5906 -1.3501 17 6 7.7860 9.7490 -2.1721 18 1 7.8913 9.4383 -3.2115 19 6 6.6883 10.8094 -2.0654 20 6 9.0905 10.3257 -1.6855 21 1 9.6012 9.8747 -0.8476 22 6 9.6321 11.4291 -2.3101 23 7 9.0100 11.9786 -3.3302 24 14 11.2487 12.1443 -1.7066 25 1 12.3756 11.4948 -2.4233 26 1 11.2720 13.6058 -1.9688 27 1 11.3838 11.9009 -0.2479 28 6 4.4487 3.2223 -1.1038 29 6 4.2539 2.7652 -2.5266 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3632 -1.0277 -0.0005 32 1 -0.3633 0.5137 0.8900 33 1 1.6886 1.8464 -0.8899 34 1 1.6885 1.8463 0.8901 35 1 3.8568 0.6439 0.8908 36 1 3.8574 0.6437 -0.8892 37 1 5.1296 2.2353 2.8815 38 1 4.0612 3.6262 3.1848 39 1 3.3809 2.0968 2.5799 40 1 5.3230 5.1968 1.4238 41 1 5.1639 5.5069 -2.5849 42 1 7.7648 8.5159 -0.4437 43 1 6.9553 11.6715 -2.6766 44 1 5.7447 10.3923 -2.4173 45 1 6.5829 11.1201 -1.0259 46 1 9.3912 12.7547 -3.7700 47 1 3.2679 3.0725 -2.8750 48 1 5.0192 3.2132 -3.1602 49 1 4.3335 1.6791 -2.5734 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000194648772.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:29:03 Heat of formation + Delta-G solvation = -14.692603 kcal Electronic energy + Delta-G solvation = -29244.420904 eV Core-core repulsion = 25172.248483 eV Total energy + Delta-G solvation = -4072.172421 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -42.60776 -40.62309 -38.96856 -37.96753 -36.77133 -35.50390 -34.29022 -34.08446 -33.04270 -31.00377 -30.18118 -29.50643 -27.35579 -27.21193 -26.45514 -24.66800 -23.68171 -23.11224 -21.75145 -21.18955 -20.27919 -19.03800 -17.98389 -17.81107 -17.21957 -17.13230 -16.94232 -16.58859 -16.20813 -16.02905 -15.86199 -15.48226 -15.41843 -15.14931 -14.57096 -14.39600 -14.30163 -14.24005 -14.14576 -14.05069 -13.77171 -13.65440 -13.44298 -13.43440 -13.05494 -12.98099 -12.86880 -12.77254 -12.73717 -12.66266 -12.46044 -12.32620 -12.25936 -12.24773 -12.14053 -11.15523 -11.09703 -10.83319 -10.76729 -10.57636 -9.78713 -9.42326 -8.65544 -8.16792 -6.33506 -0.52449 1.13975 1.43831 1.44283 1.53957 1.55241 1.69861 1.80239 1.84380 2.36496 2.65124 2.82568 2.84925 3.09977 3.12955 3.58011 3.67625 3.73358 3.86373 3.93933 4.06405 4.17761 4.31174 4.36666 4.43572 4.45304 4.51029 4.58062 4.64643 4.67369 4.74529 4.77253 4.78652 4.85322 4.93789 4.97516 5.00415 5.11806 5.12103 5.22072 5.30711 5.45975 5.60839 5.70869 5.72776 5.90999 6.00266 6.00833 6.11904 6.20584 6.53410 6.72255 6.93250 7.31401 7.49758 8.89358 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.024110 B = 0.001966 C = 0.001880 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1161.083786 B =14236.179463 C =14890.088688 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.404 6.404 3 C 0.051 3.949 4 C 0.096 3.904 5 N -0.423 5.423 6 C 0.013 3.987 7 C -0.085 4.085 8 C -0.189 4.189 9 C -0.237 4.237 10 C 0.149 3.851 11 C -0.197 4.197 12 C 0.287 3.713 13 N -0.465 5.465 14 C 0.565 3.435 15 O -0.585 6.585 16 N -0.709 5.709 17 C 0.270 3.730 18 H 0.012 0.988 19 C -0.133 4.133 20 C -0.551 4.551 21 H 0.062 0.938 22 C 0.019 3.981 23 N -0.911 5.911 24 Si 0.969 3.031 25 H -0.275 1.275 26 H -0.278 1.278 27 H -0.268 1.268 28 C 0.125 3.875 29 C -0.103 4.103 30 H 0.051 0.949 31 H 0.101 0.899 32 H 0.048 0.952 33 H 0.063 0.937 34 H 0.056 0.944 35 H 0.112 0.888 36 H 0.121 0.879 37 H 0.079 0.921 38 H 0.080 0.920 39 H 0.084 0.916 40 H 0.130 0.870 41 H 0.168 0.832 42 H 0.393 0.607 43 H 0.071 0.929 44 H 0.020 0.980 45 H 0.033 0.967 46 H 0.267 0.733 47 H 0.102 0.898 48 H 0.096 0.904 49 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.334 -28.397 6.801 34.479 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.322 6.322 3 C -0.027 4.027 4 C -0.024 4.024 5 N -0.099 5.099 6 C -0.094 4.094 7 C -0.142 4.142 8 C -0.212 4.212 9 C -0.244 4.244 10 C 0.124 3.876 11 C -0.205 4.205 12 C -0.025 4.025 13 N -0.143 5.143 14 C 0.354 3.646 15 O -0.468 6.468 16 N -0.355 5.355 17 C 0.167 3.833 18 H 0.030 0.970 19 C -0.192 4.192 20 C -0.589 4.589 21 H 0.080 0.920 22 C -0.181 4.181 23 N -0.549 5.549 24 Si 0.794 3.206 25 H -0.201 1.201 26 H -0.204 1.204 27 H -0.193 1.193 28 C 0.005 3.995 29 C -0.160 4.160 30 H 0.070 0.930 31 H 0.120 0.880 32 H 0.067 0.933 33 H 0.081 0.919 34 H 0.074 0.926 35 H 0.130 0.870 36 H 0.139 0.861 37 H 0.098 0.902 38 H 0.099 0.901 39 H 0.103 0.897 40 H 0.148 0.852 41 H 0.186 0.814 42 H 0.226 0.774 43 H 0.089 0.911 44 H 0.039 0.961 45 H 0.052 0.948 46 H 0.076 0.924 47 H 0.121 0.879 48 H 0.115 0.885 49 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -18.026 -28.762 7.572 34.778 hybrid contribution 0.779 1.317 0.297 1.558 sum -17.247 -27.446 7.869 33.356 Atomic orbital electron populations 1.22960 0.78814 1.04189 1.00971 1.87772 1.21811 1.26985 1.95669 1.22723 0.92622 0.85465 1.01877 1.21854 0.92437 0.80535 1.07621 1.43617 1.46423 1.15070 1.04763 1.20517 1.06052 0.92809 0.89979 1.20435 1.03229 1.02589 0.87942 1.22375 1.06255 0.98405 0.94177 1.18651 1.15605 0.97082 0.93032 1.21472 0.81907 0.85200 0.99003 1.17848 1.12526 1.01648 0.88522 1.25366 0.92132 0.92507 0.92470 1.80995 1.11403 1.09419 1.12483 1.17931 0.78369 0.82267 0.86047 1.90725 1.56707 1.79729 1.19667 1.46282 1.48817 1.22817 1.17632 1.18430 0.93097 0.81551 0.90238 0.96988 1.21896 0.96361 1.01132 0.99810 1.21494 1.06357 1.13967 1.17110 0.92015 1.25714 1.01063 0.96567 0.94791 1.70027 1.40039 1.22749 1.22117 0.85390 0.78993 0.77481 0.78736 1.20064 1.20369 1.19281 1.21494 0.96548 0.90721 0.90700 1.20801 1.05296 1.03429 0.86462 0.93049 0.88019 0.93320 0.91899 0.92619 0.87014 0.86123 0.90224 0.90133 0.89696 0.85189 0.81431 0.77387 0.91061 0.96079 0.94828 0.92371 0.87918 0.88537 0.88617 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.15 11.01 113.37 1.25 1.39 16 2 O -0.40 -3.90 10.70 -148.98 -1.59 -5.49 16 3 C 0.05 0.40 6.26 71.98 0.45 0.85 16 4 C 0.10 0.74 5.73 86.38 0.50 1.24 16 5 N -0.42 -5.91 2.68 -494.04 -1.33 -7.24 16 6 C 0.01 0.24 6.84 40.93 0.28 0.52 16 7 C -0.08 -1.07 9.79 71.24 0.70 -0.37 16 8 C -0.19 -4.74 9.37 23.66 0.22 -4.52 16 9 C -0.24 -5.51 5.91 -20.03 -0.12 -5.63 16 10 C 0.15 3.95 9.19 23.12 0.21 4.16 16 11 C -0.20 -6.74 5.90 -19.79 -0.12 -6.86 16 12 C 0.29 10.07 10.94 88.37 0.97 11.04 16 13 N -0.46 -16.96 17.23 18.96 0.33 -16.64 16 14 C 0.57 24.40 7.71 86.52 0.67 25.07 16 15 O -0.58 -28.15 15.97 -4.26 -0.07 -28.22 16 16 N -0.71 -33.27 5.02 -449.82 -2.26 -35.53 16 17 C 0.27 14.79 2.56 44.24 0.11 14.90 16 18 H 0.01 0.76 7.58 -2.39 -0.02 0.74 16 19 C -0.13 -7.03 9.26 71.98 0.67 -6.37 16 20 C -0.55 -31.12 8.73 25.60 0.22 -30.89 16 21 H 0.06 3.39 7.74 -2.91 -0.02 3.36 16 22 C 0.02 1.07 5.30 84.65 0.45 1.52 16 23 N -0.91 -53.10 11.32 21.45 0.24 -52.86 16 24 Si 0.97 43.97 29.54 68.60 2.03 46.00 16 25 H -0.28 -12.22 7.11 99.48 0.71 -11.51 16 26 H -0.28 -12.25 7.11 99.48 0.71 -11.54 16 27 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 28 C 0.12 1.97 6.95 42.21 0.29 2.27 16 29 C -0.10 -0.85 9.88 71.24 0.70 -0.14 16 30 H 0.05 0.22 8.14 -2.39 -0.02 0.20 16 31 H 0.10 0.32 8.14 -2.39 -0.02 0.30 16 32 H 0.05 0.22 8.14 -2.39 -0.02 0.20 16 33 H 0.06 0.46 8.14 -2.39 -0.02 0.45 16 34 H 0.06 0.47 8.14 -2.38 -0.02 0.46 16 35 H 0.11 0.71 7.49 -2.39 -0.02 0.69 16 36 H 0.12 0.56 6.87 -2.39 -0.02 0.55 16 37 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 38 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 39 H 0.08 0.69 7.57 -2.39 -0.02 0.67 16 40 H 0.13 3.84 5.17 -2.91 -0.02 3.82 16 41 H 0.17 3.84 7.50 -2.91 -0.02 3.81 16 42 H 0.39 17.40 7.41 -92.71 -0.69 16.71 16 43 H 0.07 4.03 6.07 -2.39 -0.01 4.02 16 44 H 0.02 1.04 8.14 -2.39 -0.02 1.02 16 45 H 0.03 1.66 8.14 -2.39 -0.02 1.64 16 46 H 0.27 14.63 8.31 -92.71 -0.77 13.85 16 47 H 0.10 0.57 8.14 -2.39 -0.02 0.55 16 48 H 0.10 0.83 7.85 -2.39 -0.02 0.82 16 49 H 0.10 0.39 6.92 -2.38 -0.02 0.37 16 Total: -1.00 -74.90 413.00 5.09 -69.80 By element: Atomic # 1 Polarization: 21.71 SS G_CDS: 0.29 Total: 22.00 kcal Atomic # 6 Polarization: 0.72 SS G_CDS: 7.45 Total: 8.18 kcal Atomic # 7 Polarization: -109.25 SS G_CDS: -3.01 Total: -112.27 kcal Atomic # 8 Polarization: -32.05 SS G_CDS: -1.66 Total: -33.71 kcal Atomic # 14 Polarization: 43.97 SS G_CDS: 2.03 Total: 46.00 kcal Total: -74.90 5.09 -69.80 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000194648772.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.111 kcal (2) G-P(sol) polarization free energy of solvation -74.895 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.784 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.091 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.804 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.693 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds