Wall clock time and date at job start Wed Apr 1 2020 04:40:48
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52994 * 1
3 3 C 1.53003 * 109.99724 * 2 1
4 4 C 1.50704 * 109.46958 * 184.31083 * 3 2 1
5 5 C 1.38235 * 120.00413 * 265.54142 * 4 3 2
6 6 C 1.38231 * 119.99921 * 179.76830 * 5 4 3
7 7 C 1.38239 * 120.00051 * 0.50488 * 6 5 4
8 8 C 1.38236 * 120.00003 * 359.75607 * 7 6 5
9 9 C 1.38231 * 119.99806 * 359.97438 * 8 7 6
10 10 C 1.54338 * 109.77953 * 121.16370 * 2 1 3
11 11 C 1.55152 * 103.02149 * 97.49868 * 10 2 1
12 12 C 1.54908 * 101.58096 * 35.30747 * 11 10 2
13 13 N 1.47021 * 109.88559 * 238.90173 * 2 1 3
14 14 C 1.34777 * 125.64396 * 59.56349 * 13 2 1
15 15 O 1.21588 * 120.00231 * 354.69350 * 14 13 2
16 16 N 1.34777 * 119.99906 * 174.69747 * 14 13 2
17 17 C 1.46501 * 120.00172 * 179.97438 * 16 14 13
18 18 C 1.50698 * 109.47081 * 179.97438 * 17 16 14
19 19 O 1.21288 * 120.00246 * 0.02562 * 18 17 16
20 20 N 1.34780 * 119.99550 * 179.97438 * 18 17 16
21 21 C 1.37106 * 119.99713 * 180.02562 * 20 18 17
22 22 H 1.08003 * 119.99701 * 0.02562 * 21 20 18
23 23 C 1.38947 * 119.99884 * 180.02562 * 21 20 18
24 24 N 1.31409 * 119.99741 * 180.02562 * 23 21 20
25 25 Si 1.86801 * 120.00232 * 359.72108 * 23 21 20
26 26 H 1.48498 * 109.47034 * 89.99965 * 25 23 21
27 27 H 1.48495 * 109.47147 * 210.00492 * 25 23 21
28 28 H 1.48506 * 109.46952 * 330.00561 * 25 23 21
29 29 H 1.09000 * 109.47202 * 179.63879 * 1 2 3
30 30 H 1.09002 * 109.47527 * 299.64419 * 1 2 3
31 31 H 1.09001 * 109.46807 * 59.64276 * 1 2 3
32 32 H 1.08994 * 109.47394 * 304.31124 * 3 2 1
33 33 H 1.08999 * 109.47036 * 64.31488 * 3 2 1
34 34 H 1.07997 * 119.99415 * 0.02562 * 5 4 3
35 35 H 1.08000 * 119.99971 * 180.23874 * 6 5 4
36 36 H 1.08006 * 119.99581 * 179.72118 * 7 6 5
37 37 H 1.07993 * 119.99905 * 179.97438 * 8 7 6
38 38 H 1.08005 * 119.99993 * 179.97438 * 9 8 7
39 39 H 1.09004 * 110.84594 * 339.02815 * 10 2 1
40 40 H 1.08998 * 110.51688 * 215.81236 * 10 2 1
41 41 H 1.09001 * 111.00317 * 277.23390 * 11 10 2
42 42 H 1.08991 * 111.00729 * 153.38182 * 11 10 2
43 43 H 1.09001 * 110.36712 * 204.15441 * 12 11 10
44 44 H 1.09002 * 110.46162 * 81.87833 * 12 11 10
45 45 H 0.97004 * 119.99949 * 0.02562 * 16 14 13
46 46 H 1.09002 * 109.46855 * 60.00038 * 17 16 14
47 47 H 1.08998 * 109.47059 * 300.00458 * 17 16 14
48 48 H 0.96994 * 120.00795 * 0.02562 * 20 18 17
49 49 H 0.97002 * 119.99853 * 179.97438 * 24 23 21
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5299 0.0000 0.0000
3 6 2.0532 1.4378 0.0000
4 6 3.5564 1.4253 -0.1068
5 6 4.3311 1.4819 1.0366
6 6 5.7099 1.4656 0.9388
7 6 6.3140 1.4032 -0.3030
8 6 5.5393 1.3520 -1.4467
9 6 4.1605 1.3627 -1.3486
10 6 2.0522 -0.7516 1.2427
11 6 2.3562 -2.1697 0.6916
12 6 2.8613 -1.8465 -0.7367
13 7 2.0300 -0.7141 -1.1839
14 6 1.7754 -0.3844 -2.4656
15 8 1.0007 0.5178 -2.7190
16 7 2.3795 -1.0550 -3.4666
17 6 2.1023 -0.6971 -4.8599
18 6 2.8983 -1.5906 -5.7760
19 8 3.6252 -2.4428 -5.3108
20 7 2.8016 -1.4433 -7.1122
21 6 3.5253 -2.2565 -7.9456
22 1 4.1726 -3.0154 -7.5313
23 6 3.4261 -2.1044 -9.3232
24 7 4.1194 -2.8842 -10.1219
25 14 2.3007 -0.7969 -10.0398
26 1 3.0563 0.4708 -10.2038
27 1 1.7972 -1.2478 -11.3620
28 1 1.1538 -0.5744 -9.1230
29 1 -0.3633 -1.0276 -0.0065
30 1 -0.3634 0.5083 0.8932
31 1 -0.3633 0.5194 -0.8868
32 1 1.6331 1.9773 -0.8488
33 1 1.7589 1.9315 0.9261
34 1 3.8591 1.5347 2.0065
35 1 6.3151 1.5059 1.8324
36 1 7.3913 1.3950 -0.3796
37 1 6.0113 1.3037 -2.4169
38 1 3.5552 1.3232 -2.2422
39 1 1.2884 -0.7950 2.0192
40 1 2.9605 -0.2815 1.6197
41 1 1.4522 -2.7778 0.6580
42 1 3.1327 -2.6591 1.2792
43 1 2.7178 -2.7048 -1.3931
44 1 3.9126 -1.5594 -0.7132
45 1 2.9972 -1.7751 -3.2645
46 1 2.3843 0.3418 -5.0312
47 1 1.0388 -0.8230 -5.0628
48 1 2.2201 -0.7620 -7.4843
49 1 4.0498 -2.7782 -11.0837
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000377077771.mol2 49
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 04:40:48
Heat of formation + Delta-G solvation = -33.406240 kcal
Electronic energy + Delta-G solvation = -31286.859209 eV
Core-core repulsion = 27213.875304 eV
Total energy + Delta-G solvation = -4072.983905 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 345.184 amu
Computer time = 0.78 seconds
Orbital eigenvalues (eV)
-40.97497 -39.18963 -38.52846 -37.57778 -34.58169 -33.95002 -33.16804 -31.86454
-31.66132 -30.95977 -30.83721 -27.62463 -26.63188 -25.70691 -24.37019 -22.79727
-22.50204 -21.45044 -20.88906 -19.69317 -19.24092 -18.41756 -17.53356 -16.91557
-16.23311 -15.87708 -15.48928 -15.26863 -15.19634 -15.05463 -14.93341 -14.32796
-14.17379 -13.90504 -13.64744 -13.43264 -13.38802 -13.12121 -13.06400 -12.74143
-12.54406 -12.46773 -12.27077 -12.17177 -12.14328 -11.94769 -11.82559 -11.35512
-11.23376 -11.15118 -10.97060 -10.84848 -10.64311 -10.64036 -10.06064 -9.86401
-9.69161 -8.98175 -8.92511 -8.75735 -8.74727 -8.39575 -8.29524 -6.40375
-3.92900 1.30820 1.36045 2.65455 3.00093 3.04711 3.12822 3.34755
3.58801 3.72695 4.02043 4.04800 4.38608 4.42062 4.60575 4.64121
4.75285 4.83139 4.94694 5.01110 5.07177 5.09072 5.14761 5.25634
5.30810 5.43983 5.47570 5.50199 5.60414 5.64111 5.66024 5.68344
5.71661 5.80103 5.83520 5.85906 5.87039 5.97468 6.01396 6.07791
6.20826 6.39520 6.43056 6.51156 6.64891 6.70219 6.97134 7.21920
7.45596 8.01062 8.17569 8.45151 8.78672 8.82426 9.30507 9.64435
10.71855
Molecular weight = 345.18amu
Principal moments of inertia in cm(-1)
A = 0.014273 B = 0.002882 C = 0.002688
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1961.212106 B = 9712.464732 C =10415.507275
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.158 4.158
2 C 0.192 3.808
3 C -0.091 4.091
4 C -0.069 4.069
5 C -0.123 4.123
6 C -0.123 4.123
7 C -0.126 4.126
8 C -0.115 4.115
9 C -0.103 4.103
10 C -0.130 4.130
11 C -0.128 4.128
12 C 0.099 3.901
13 N -0.624 5.624
14 C 0.726 3.274
15 O -0.594 6.594
16 N -0.725 5.725
17 C 0.126 3.874
18 C 0.439 3.561
19 O -0.578 6.578
20 N -0.577 5.577
21 C -0.309 4.309
22 H 0.121 0.879
23 C 0.045 3.955
24 N -0.875 5.875
25 Si 0.879 3.121
26 H -0.269 1.269
27 H -0.275 1.275
28 H -0.267 1.267
29 H 0.056 0.944
30 H 0.060 0.940
31 H 0.078 0.922
32 H 0.088 0.912
33 H 0.077 0.923
34 H 0.118 0.882
35 H 0.117 0.883
36 H 0.118 0.882
37 H 0.120 0.880
38 H 0.118 0.882
39 H 0.081 0.919
40 H 0.083 0.917
41 H 0.075 0.925
42 H 0.081 0.919
43 H 0.074 0.926
44 H 0.067 0.933
45 H 0.407 0.593
46 H 0.082 0.918
47 H 0.082 0.918
48 H 0.374 0.626
49 H 0.275 0.725
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -3.093 8.114 24.693 26.176
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.216 4.216
2 C 0.107 3.893
3 C -0.129 4.129
4 C -0.069 4.069
5 C -0.141 4.141
6 C -0.141 4.141
7 C -0.144 4.144
8 C -0.133 4.133
9 C -0.121 4.121
10 C -0.168 4.168
11 C -0.166 4.166
12 C -0.025 4.025
13 N -0.362 5.362
14 C 0.428 3.572
15 O -0.473 6.473
16 N -0.383 5.383
17 C -0.002 4.002
18 C 0.225 3.775
19 O -0.463 6.463
20 N -0.215 5.215
21 C -0.438 4.438
22 H 0.139 0.861
23 C -0.159 4.159
24 N -0.514 5.514
25 Si 0.704 3.296
26 H -0.194 1.194
27 H -0.200 1.200
28 H -0.192 1.192
29 H 0.075 0.925
30 H 0.079 0.921
31 H 0.096 0.904
32 H 0.106 0.894
33 H 0.096 0.904
34 H 0.136 0.864
35 H 0.135 0.865
36 H 0.136 0.864
37 H 0.138 0.862
38 H 0.136 0.864
39 H 0.099 0.901
40 H 0.102 0.898
41 H 0.093 0.907
42 H 0.100 0.900
43 H 0.092 0.908
44 H 0.085 0.915
45 H 0.245 0.755
46 H 0.100 0.900
47 H 0.100 0.900
48 H 0.207 0.793
49 H 0.086 0.914
Dipole moment (debyes) X Y Z Total
from point charges -3.124 8.138 24.445 25.953
hybrid contribution -0.405 0.525 -0.858 1.084
sum -3.528 8.662 23.587 25.374
Atomic orbital electron populations
1.22187 0.93928 1.02367 1.03084 1.20679 0.93850 0.90788 0.83988
1.21033 0.91453 0.96739 1.03662 1.19745 0.95262 0.98817 0.93064
1.20984 0.93714 1.01757 0.97655 1.21066 0.94708 1.00881 0.97412
1.21118 0.99700 1.00945 0.92666 1.21216 0.93974 0.99465 0.98676
1.21124 0.94634 0.98956 0.97395 1.22873 1.02219 0.95505 0.96231
1.22692 1.01809 0.96849 0.95232 1.22272 0.95155 0.89245 0.95797
1.47515 1.53673 1.31652 1.03364 1.15287 0.80755 0.81912 0.79228
1.90870 1.40028 1.33784 1.82651 1.44827 1.49310 1.39787 1.04346
1.20787 1.00119 0.98928 0.80389 1.19662 0.87024 0.87727 0.83075
1.90534 1.42975 1.37648 1.75111 1.42115 1.41079 1.33075 1.05195
1.19436 1.22592 1.14572 0.87184 0.86116 1.25057 0.97435 0.97589
0.95801 1.69619 1.39984 1.37551 1.04256 0.86681 0.80930 0.82042
0.79902 1.19399 1.20005 1.19202 0.92504 0.92148 0.90352 0.89386
0.90424 0.86384 0.86466 0.86418 0.86162 0.86408 0.90087 0.89825
0.90654 0.90013 0.90751 0.91484 0.75489 0.90024 0.89989 0.79265
0.91408
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.16 -1.62 8.36 37.15 0.31 -1.31 16
2 C 0.19 1.97 0.54 -130.84 -0.07 1.90 16
3 C -0.09 -0.96 4.34 -27.88 -0.12 -1.08 16
4 C -0.07 -0.76 4.46 -104.62 -0.47 -1.23 16
5 C -0.12 -1.16 7.97 -39.59 -0.32 -1.47 16
6 C -0.12 -1.15 10.05 -39.58 -0.40 -1.54 16
7 C -0.13 -1.32 10.05 -39.58 -0.40 -1.71 16
8 C -0.12 -1.40 10.05 -39.58 -0.40 -1.79 16
9 C -0.10 -1.33 8.65 -39.58 -0.34 -1.67 16
10 C -0.13 -1.00 5.84 -24.89 -0.15 -1.15 16
11 C -0.13 -1.00 7.09 -24.59 -0.17 -1.18 16
12 C 0.10 1.04 6.47 -2.53 -0.02 1.03 16
13 N -0.62 -7.70 1.79 -161.44 -0.29 -7.99 16
14 C 0.73 11.34 6.07 -86.92 -0.53 10.81 16
15 O -0.59 -10.62 14.04 5.29 0.07 -10.55 16
16 N -0.72 -11.93 5.49 -66.41 -0.36 -12.30 16
17 C 0.13 2.22 6.15 -5.19 -0.03 2.19 16
18 C 0.44 9.67 7.85 -10.98 -0.09 9.59 16
19 O -0.58 -14.61 15.24 5.55 0.08 -14.52 16
20 N -0.58 -13.43 5.09 -10.96 -0.06 -13.48 16
21 C -0.31 -8.53 10.16 -14.93 -0.15 -8.68 16
22 H 0.12 3.79 7.39 -52.48 -0.39 3.40 16
23 C 0.05 1.22 5.50 -17.47 -0.10 1.12 16
24 N -0.88 -25.02 13.96 55.50 0.77 -24.25 16
25 Si 0.88 19.06 27.73 -169.99 -4.71 14.35 16
26 H -0.27 -5.72 7.11 56.52 0.40 -5.32 16
27 H -0.27 -5.98 7.11 56.52 0.40 -5.58 16
28 H -0.27 -5.31 6.53 56.52 0.37 -4.94 16
29 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16
30 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16
31 H 0.08 1.02 6.59 -51.93 -0.34 0.68 16
32 H 0.09 1.15 7.15 -51.93 -0.37 0.78 16
33 H 0.08 0.65 8.06 -51.93 -0.42 0.23 16
34 H 0.12 0.85 7.62 -52.49 -0.40 0.45 16
35 H 0.12 0.84 8.06 -52.49 -0.42 0.41 16
36 H 0.12 1.02 8.06 -52.48 -0.42 0.60 16
37 H 0.12 1.42 8.06 -52.49 -0.42 1.00 16
38 H 0.12 1.77 6.41 -52.48 -0.34 1.43 16
39 H 0.08 0.50 7.83 -51.93 -0.41 0.09 16
40 H 0.08 0.63 5.12 -51.93 -0.27 0.36 16
41 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16
42 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16
43 H 0.07 0.82 7.50 -51.93 -0.39 0.43 16
44 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16
45 H 0.41 6.81 6.04 -40.82 -0.25 6.56 16
46 H 0.08 1.34 8.14 -51.93 -0.42 0.92 16
47 H 0.08 1.37 8.14 -51.93 -0.42 0.95 16
48 H 0.37 7.72 5.77 -40.82 -0.24 7.48 16
49 H 0.28 7.26 8.31 -40.82 -0.34 6.92 16
LS Contribution 388.61 15.07 5.86 5.86
Total: -1.00 -32.15 388.61 -9.26 -41.41
By element:
Atomic # 1 Polarization: 24.85 SS G_CDS: -7.19 Total: 17.66 kcal
Atomic # 6 Polarization: 7.24 SS G_CDS: -3.43 Total: 3.81 kcal
Atomic # 7 Polarization: -58.08 SS G_CDS: 0.06 Total: -58.02 kcal
Atomic # 8 Polarization: -25.23 SS G_CDS: 0.16 Total: -25.07 kcal
Atomic # 14 Polarization: 19.06 SS G_CDS: -4.71 Total: 14.35 kcal
Total LS contribution 5.86 Total: 5.86 kcal
Total: -32.15 -9.26 -41.41 kcal
The number of atoms in the molecule is 49
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000377077771.mol2 49
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 7.999 kcal
(2) G-P(sol) polarization free energy of solvation -32.149 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.150 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.257 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.405 kcal
(6) G-S(sol) free energy of system = (1) + (5) -33.406 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.78 seconds