Wall clock time and date at job start Wed Apr 1 2020 04:40:47
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52994 * 1
3 3 C 1.53003 * 109.99724 * 2 1
4 4 C 1.50704 * 109.46958 * 184.31083 * 3 2 1
5 5 C 1.38235 * 120.00413 * 265.54142 * 4 3 2
6 6 C 1.38231 * 119.99921 * 179.76830 * 5 4 3
7 7 C 1.38239 * 120.00051 * 0.50488 * 6 5 4
8 8 C 1.38236 * 120.00003 * 359.75607 * 7 6 5
9 9 C 1.38231 * 119.99806 * 359.97438 * 8 7 6
10 10 C 1.54338 * 109.77953 * 121.16370 * 2 1 3
11 11 C 1.55152 * 103.02149 * 97.49868 * 10 2 1
12 12 C 1.54908 * 101.58096 * 35.30747 * 11 10 2
13 13 N 1.47021 * 109.88559 * 238.90173 * 2 1 3
14 14 C 1.34777 * 125.64396 * 59.56349 * 13 2 1
15 15 O 1.21588 * 120.00231 * 354.69350 * 14 13 2
16 16 N 1.34777 * 119.99906 * 174.69747 * 14 13 2
17 17 C 1.46501 * 120.00172 * 179.97438 * 16 14 13
18 18 C 1.50698 * 109.47081 * 179.97438 * 17 16 14
19 19 O 1.21288 * 120.00246 * 0.02562 * 18 17 16
20 20 N 1.34780 * 119.99550 * 179.97438 * 18 17 16
21 21 C 1.37106 * 119.99713 * 180.02562 * 20 18 17
22 22 H 1.08003 * 119.99701 * 0.02562 * 21 20 18
23 23 C 1.38947 * 119.99884 * 180.02562 * 21 20 18
24 24 N 1.31409 * 119.99741 * 180.02562 * 23 21 20
25 25 Si 1.86801 * 120.00232 * 359.72108 * 23 21 20
26 26 H 1.48498 * 109.47034 * 89.99965 * 25 23 21
27 27 H 1.48495 * 109.47147 * 210.00492 * 25 23 21
28 28 H 1.48506 * 109.46952 * 330.00561 * 25 23 21
29 29 H 1.09000 * 109.47202 * 179.63879 * 1 2 3
30 30 H 1.09002 * 109.47527 * 299.64419 * 1 2 3
31 31 H 1.09001 * 109.46807 * 59.64276 * 1 2 3
32 32 H 1.08994 * 109.47394 * 304.31124 * 3 2 1
33 33 H 1.08999 * 109.47036 * 64.31488 * 3 2 1
34 34 H 1.07997 * 119.99415 * 0.02562 * 5 4 3
35 35 H 1.08000 * 119.99971 * 180.23874 * 6 5 4
36 36 H 1.08006 * 119.99581 * 179.72118 * 7 6 5
37 37 H 1.07993 * 119.99905 * 179.97438 * 8 7 6
38 38 H 1.08005 * 119.99993 * 179.97438 * 9 8 7
39 39 H 1.09004 * 110.84594 * 339.02815 * 10 2 1
40 40 H 1.08998 * 110.51688 * 215.81236 * 10 2 1
41 41 H 1.09001 * 111.00317 * 277.23390 * 11 10 2
42 42 H 1.08991 * 111.00729 * 153.38182 * 11 10 2
43 43 H 1.09001 * 110.36712 * 204.15441 * 12 11 10
44 44 H 1.09002 * 110.46162 * 81.87833 * 12 11 10
45 45 H 0.97004 * 119.99949 * 0.02562 * 16 14 13
46 46 H 1.09002 * 109.46855 * 60.00038 * 17 16 14
47 47 H 1.08998 * 109.47059 * 300.00458 * 17 16 14
48 48 H 0.96994 * 120.00795 * 0.02562 * 20 18 17
49 49 H 0.97002 * 119.99853 * 179.97438 * 24 23 21
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5299 0.0000 0.0000
3 6 2.0532 1.4378 0.0000
4 6 3.5564 1.4253 -0.1068
5 6 4.3311 1.4819 1.0366
6 6 5.7099 1.4656 0.9388
7 6 6.3140 1.4032 -0.3030
8 6 5.5393 1.3520 -1.4467
9 6 4.1605 1.3627 -1.3486
10 6 2.0522 -0.7516 1.2427
11 6 2.3562 -2.1697 0.6916
12 6 2.8613 -1.8465 -0.7367
13 7 2.0300 -0.7141 -1.1839
14 6 1.7754 -0.3844 -2.4656
15 8 1.0007 0.5178 -2.7190
16 7 2.3795 -1.0550 -3.4666
17 6 2.1023 -0.6971 -4.8599
18 6 2.8983 -1.5906 -5.7760
19 8 3.6252 -2.4428 -5.3108
20 7 2.8016 -1.4433 -7.1122
21 6 3.5253 -2.2565 -7.9456
22 1 4.1726 -3.0154 -7.5313
23 6 3.4261 -2.1044 -9.3232
24 7 4.1194 -2.8842 -10.1219
25 14 2.3007 -0.7969 -10.0398
26 1 3.0563 0.4708 -10.2038
27 1 1.7972 -1.2478 -11.3620
28 1 1.1538 -0.5744 -9.1230
29 1 -0.3633 -1.0276 -0.0065
30 1 -0.3634 0.5083 0.8932
31 1 -0.3633 0.5194 -0.8868
32 1 1.6331 1.9773 -0.8488
33 1 1.7589 1.9315 0.9261
34 1 3.8591 1.5347 2.0065
35 1 6.3151 1.5059 1.8324
36 1 7.3913 1.3950 -0.3796
37 1 6.0113 1.3037 -2.4169
38 1 3.5552 1.3232 -2.2422
39 1 1.2884 -0.7950 2.0192
40 1 2.9605 -0.2815 1.6197
41 1 1.4522 -2.7778 0.6580
42 1 3.1327 -2.6591 1.2792
43 1 2.7178 -2.7048 -1.3931
44 1 3.9126 -1.5594 -0.7132
45 1 2.9972 -1.7751 -3.2645
46 1 2.3843 0.3418 -5.0312
47 1 1.0388 -0.8230 -5.0628
48 1 2.2201 -0.7620 -7.4843
49 1 4.0498 -2.7782 -11.0837
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000377077771.mol2 49
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 04:40:47
Heat of formation + Delta-G solvation = -54.005772 kcal
Electronic energy + Delta-G solvation = -31287.752472 eV
Core-core repulsion = 27213.875304 eV
Total energy + Delta-G solvation = -4073.877168 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 345.184 amu
Computer time = 1.02 seconds
Orbital eigenvalues (eV)
-41.95928 -40.59218 -39.82840 -38.68352 -36.30738 -35.46453 -34.18584 -33.84196
-32.64367 -31.77996 -31.65998 -29.20395 -27.44124 -26.57221 -26.16706 -23.67731
-23.41103 -22.25179 -21.86380 -21.42860 -20.77847 -20.06592 -18.63855 -17.81123
-17.46857 -17.17061 -16.96098 -16.70397 -16.43988 -16.07651 -15.99637 -15.66641
-15.54679 -14.97235 -14.83989 -14.46573 -14.41850 -14.24518 -14.20825 -14.04509
-13.98010 -13.64693 -13.48611 -13.28664 -13.01653 -12.97915 -12.87857 -12.65023
-12.47152 -12.09576 -12.02312 -11.88348 -11.78635 -11.64965 -11.60566 -11.36203
-11.06377 -10.68105 -10.35945 -10.24208 -9.77705 -9.65486 -9.36738 -8.47651
-6.09576 0.48882 0.52727 1.29060 1.31818 1.41406 1.53318 1.75909
2.15147 2.18316 2.69895 2.90188 3.06138 3.08568 3.61267 3.66888
3.87057 3.97173 4.00670 4.10142 4.16787 4.21275 4.28425 4.33881
4.36940 4.39729 4.43457 4.56256 4.66732 4.68188 4.73406 4.83410
4.91546 4.97267 5.03965 5.06385 5.13576 5.17909 5.22440 5.27941
5.34543 5.40041 5.48638 5.56208 5.62337 5.67338 5.80801 5.85754
6.09628 6.16722 6.46721 6.75598 6.95984 7.25828 7.56085 7.75442
8.68842
Molecular weight = 345.18amu
Principal moments of inertia in cm(-1)
A = 0.014273 B = 0.002882 C = 0.002688
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1961.212106 B = 9712.464732 C =10415.507275
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.153 4.153
2 C 0.183 3.817
3 C -0.086 4.086
4 C -0.073 4.073
5 C -0.115 4.115
6 C -0.118 4.118
7 C -0.132 4.132
8 C -0.136 4.136
9 C -0.124 4.124
10 C -0.120 4.120
11 C -0.119 4.119
12 C 0.092 3.908
13 N -0.619 5.619
14 C 0.725 3.275
15 O -0.619 6.619
16 N -0.731 5.731
17 C 0.140 3.860
18 C 0.446 3.554
19 O -0.613 6.613
20 N -0.577 5.577
21 C -0.331 4.331
22 H 0.063 0.937
23 C -0.006 4.006
24 N -0.925 5.925
25 Si 0.957 3.043
26 H -0.256 1.256
27 H -0.272 1.272
28 H -0.234 1.234
29 H 0.056 0.944
30 H 0.088 0.912
31 H 0.044 0.956
32 H 0.054 0.946
33 H 0.106 0.894
34 H 0.151 0.849
35 H 0.148 0.852
36 H 0.133 0.867
37 H 0.108 0.892
38 H 0.086 0.914
39 H 0.108 0.892
40 H 0.091 0.909
41 H 0.079 0.921
42 H 0.102 0.898
43 H 0.063 0.937
44 H 0.060 0.940
45 H 0.405 0.595
46 H 0.097 0.903
47 H 0.099 0.901
48 H 0.391 0.609
49 H 0.282 0.718
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -4.474 9.808 28.070 30.069
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.211 4.211
2 C 0.099 3.901
3 C -0.124 4.124
4 C -0.073 4.073
5 C -0.133 4.133
6 C -0.136 4.136
7 C -0.150 4.150
8 C -0.154 4.154
9 C -0.143 4.143
10 C -0.157 4.157
11 C -0.157 4.157
12 C -0.031 4.031
13 N -0.356 5.356
14 C 0.427 3.573
15 O -0.501 6.501
16 N -0.389 5.389
17 C 0.012 3.988
18 C 0.234 3.766
19 O -0.499 6.499
20 N -0.217 5.217
21 C -0.460 4.460
22 H 0.081 0.919
23 C -0.206 4.206
24 N -0.565 5.565
25 Si 0.777 3.223
26 H -0.181 1.181
27 H -0.196 1.196
28 H -0.158 1.158
29 H 0.075 0.925
30 H 0.107 0.893
31 H 0.063 0.937
32 H 0.073 0.927
33 H 0.125 0.875
34 H 0.169 0.831
35 H 0.166 0.834
36 H 0.151 0.849
37 H 0.126 0.874
38 H 0.104 0.896
39 H 0.126 0.874
40 H 0.110 0.890
41 H 0.098 0.902
42 H 0.121 0.879
43 H 0.082 0.918
44 H 0.078 0.922
45 H 0.242 0.758
46 H 0.115 0.885
47 H 0.117 0.883
48 H 0.227 0.773
49 H 0.091 0.909
Dipole moment (debyes) X Y Z Total
from point charges -4.510 9.832 27.875 29.900
hybrid contribution 0.131 -0.063 -1.808 1.814
sum -4.379 9.769 26.067 28.180
Atomic orbital electron populations
1.22137 0.93870 1.02193 1.02859 1.21000 0.93975 0.90931 0.84222
1.20999 0.91011 0.96797 1.03640 1.19824 0.95670 0.98916 0.92915
1.21309 0.93715 1.00065 0.98187 1.21449 0.95125 0.99149 0.97829
1.21353 1.00471 1.00524 0.92618 1.21245 0.94043 1.00968 0.99191
1.20979 0.94731 1.01206 0.97357 1.22885 1.03243 0.94453 0.95160
1.22701 1.02539 0.97380 0.93055 1.22418 0.94731 0.88230 0.97724
1.47595 1.53150 1.32062 1.02778 1.15356 0.80440 0.81435 0.80066
1.90846 1.41174 1.34757 1.83307 1.44823 1.49719 1.40103 1.04218
1.20644 0.99919 0.98219 0.80063 1.20459 0.85949 0.87078 0.83137
1.90518 1.44336 1.39228 1.75848 1.41912 1.41355 1.33216 1.05216
1.19026 1.23560 1.14976 0.88455 0.91859 1.26040 0.98945 1.00159
0.95493 1.69776 1.41897 1.39840 1.04955 0.85465 0.79245 0.78300
0.79246 1.18075 1.19649 1.15765 0.92539 0.89295 0.93670 0.92693
0.87527 0.83090 0.83386 0.84900 0.87373 0.89565 0.87409 0.89012
0.90204 0.87921 0.91820 0.92157 0.75810 0.88513 0.88306 0.77290
0.90877
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -2.87 8.36 71.98 0.60 -2.27 16
2 C 0.18 3.42 0.54 3.96 0.00 3.42 16
3 C -0.09 -1.69 4.34 29.85 0.13 -1.56 16
4 C -0.07 -1.52 4.46 -19.86 -0.09 -1.61 16
5 C -0.12 -1.76 7.97 22.27 0.18 -1.58 16
6 C -0.12 -1.81 10.05 22.27 0.22 -1.59 16
7 C -0.13 -2.58 10.05 22.27 0.22 -2.35 16
8 C -0.14 -3.42 10.05 22.27 0.22 -3.20 16
9 C -0.12 -3.33 8.65 22.27 0.19 -3.13 16
10 C -0.12 -1.37 5.84 31.79 0.19 -1.18 16
11 C -0.12 -1.52 7.09 31.98 0.23 -1.30 16
12 C 0.09 1.89 6.47 86.86 0.56 2.45 16
13 N -0.62 -15.16 1.79 -782.94 -1.40 -16.56 16
14 C 0.72 23.20 6.07 179.05 1.09 24.29 16
15 O -0.62 -22.72 14.04 -3.99 -0.06 -22.78 16
16 N -0.73 -24.87 5.49 -482.29 -2.65 -27.51 16
17 C 0.14 4.96 6.15 85.63 0.53 5.49 16
18 C 0.45 20.24 7.85 87.66 0.69 20.92 16
19 O -0.61 -32.59 15.24 -3.05 -0.05 -32.64 16
20 N -0.58 -27.29 5.09 -306.98 -1.56 -28.85 16
21 C -0.33 -19.11 10.16 84.04 0.85 -18.25 16
22 H 0.06 4.30 7.39 -2.91 -0.02 4.28 16
23 C -0.01 -0.34 5.50 84.93 0.47 0.12 16
24 N -0.92 -54.83 13.96 21.66 0.30 -54.53 16
25 Si 0.96 38.81 27.73 68.60 1.90 40.71 16
26 H -0.26 -9.91 7.11 99.48 0.71 -9.20 16
27 H -0.27 -10.87 7.11 99.48 0.71 -10.16 16
28 H -0.23 -8.20 6.53 99.48 0.65 -7.55 16
29 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16
30 H 0.09 1.14 8.14 -2.39 -0.02 1.12 16
31 H 0.04 1.17 6.59 -2.39 -0.02 1.15 16
32 H 0.05 1.46 7.15 -2.39 -0.02 1.44 16
33 H 0.11 1.43 8.06 -2.39 -0.02 1.41 16
34 H 0.15 1.33 7.62 -2.91 -0.02 1.31 16
35 H 0.15 1.40 8.06 -2.91 -0.02 1.37 16
36 H 0.13 2.11 8.06 -2.91 -0.02 2.08 16
37 H 0.11 2.81 8.06 -2.91 -0.02 2.79 16
38 H 0.09 2.81 6.41 -2.91 -0.02 2.79 16
39 H 0.11 0.74 7.83 -2.38 -0.02 0.73 16
40 H 0.09 0.94 5.12 -2.39 -0.01 0.92 16
41 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16
42 H 0.10 0.94 8.14 -2.39 -0.02 0.92 16
43 H 0.06 1.43 7.50 -2.39 -0.02 1.41 16
44 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16
45 H 0.40 14.23 6.04 -92.71 -0.56 13.67 16
46 H 0.10 3.18 8.14 -2.39 -0.02 3.16 16
47 H 0.10 3.22 8.14 -2.39 -0.02 3.20 16
48 H 0.39 15.67 5.77 -92.71 -0.53 15.13 16
49 H 0.28 15.24 8.31 -92.71 -0.77 14.47 16
Total: -1.00 -76.35 388.61 2.60 -73.74
By element:
Atomic # 1 Polarization: 49.92 SS G_CDS: -0.17 Total: 49.75 kcal
Atomic # 6 Polarization: 12.38 SS G_CDS: 6.28 Total: 18.66 kcal
Atomic # 7 Polarization: -122.14 SS G_CDS: -5.31 Total: -127.45 kcal
Atomic # 8 Polarization: -55.31 SS G_CDS: -0.10 Total: -55.42 kcal
Atomic # 14 Polarization: 38.81 SS G_CDS: 1.90 Total: 40.71 kcal
Total: -76.35 2.60 -73.74 kcal
The number of atoms in the molecule is 49
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000377077771.mol2 49
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 19.739 kcal
(2) G-P(sol) polarization free energy of solvation -76.345 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.607 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.601 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.745 kcal
(6) G-S(sol) free energy of system = (1) + (5) -54.006 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.02 seconds