Wall clock time and date at job start Wed Apr 1 2020 02:56:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38289 * 119.53437 * 2 1 4 4 C 1.38491 * 119.23982 * 179.76607 * 3 2 1 5 5 C 1.39331 * 118.35700 * 0.48216 * 4 3 2 6 6 N 1.39755 * 120.49412 * 179.75199 * 5 4 3 7 7 C 1.34774 * 119.99918 * 325.31600 * 6 5 4 8 8 O 1.21375 * 119.99783 * 4.69199 * 7 6 5 9 9 C 1.49352 * 119.99371 * 184.69270 * 7 6 5 10 10 O 1.21350 * 120.00716 * 6.28022 * 9 7 6 11 11 N 1.34790 * 119.99425 * 186.27896 * 9 7 6 12 12 C 1.46925 * 120.62606 * 175.32788 * 11 9 7 13 13 C 1.53197 * 108.88665 * 233.68093 * 12 11 9 14 14 C 1.53038 * 109.31397 * 305.29332 * 13 12 11 15 15 C 1.53006 * 109.45554 * 181.38863 * 14 13 12 16 16 C 1.50701 * 109.46500 * 175.00260 * 15 14 13 17 17 H 1.08003 * 120.00367 * 359.97438 * 16 15 14 18 18 C 1.37883 * 119.99837 * 180.02562 * 16 15 14 19 19 N 1.31510 * 119.99875 * 359.97438 * 18 16 15 20 20 Si 1.86800 * 120.00129 * 179.97438 * 18 16 15 21 21 H 1.48506 * 109.47033 * 59.99725 * 20 18 16 22 22 H 1.48495 * 109.47029 * 179.97438 * 20 18 16 23 23 H 1.48498 * 109.46917 * 299.99886 * 20 18 16 24 24 C 1.53044 * 109.53664 * 61.37130 * 14 13 12 25 25 C 1.47205 * 120.81413 * 355.47316 * 11 9 7 26 26 C 1.38908 * 119.01221 * 359.48006 * 5 4 3 27 27 C 1.50703 * 119.67056 * 180.27452 * 26 5 4 28 28 N 1.31808 * 120.65912 * 0.29945 * 26 5 4 29 29 H 1.08997 * 109.46960 * 270.02117 * 1 2 3 30 30 H 1.09001 * 109.47289 * 30.01349 * 1 2 3 31 31 H 1.08998 * 109.47329 * 150.01595 * 1 2 3 32 32 H 1.07994 * 120.37923 * 0.02658 * 3 2 1 33 33 H 1.07998 * 120.82113 * 180.23881 * 4 3 2 34 34 H 0.97003 * 119.99536 * 145.31717 * 6 5 4 35 35 H 1.08994 * 109.58627 * 113.82760 * 12 11 9 36 36 H 1.09001 * 109.59020 * 353.53945 * 12 11 9 37 37 H 1.09001 * 109.50007 * 65.25240 * 13 12 11 38 38 H 1.09009 * 109.49467 * 185.31116 * 13 12 11 39 39 H 1.08995 * 109.45944 * 301.36066 * 14 13 12 40 40 H 1.08996 * 109.47369 * 294.99960 * 15 14 13 41 41 H 1.08998 * 109.47115 * 55.00440 * 15 14 13 42 42 H 0.97001 * 120.00031 * 179.97438 * 19 18 16 43 43 H 1.08998 * 109.49801 * 58.58414 * 24 14 13 44 44 H 1.08998 * 109.49224 * 178.68180 * 24 14 13 45 45 H 1.09000 * 109.53517 * 6.53227 * 25 11 9 46 46 H 1.09002 * 109.67712 * 246.22650 * 25 11 9 47 47 H 1.08997 * 109.47042 * 90.00305 * 27 26 5 48 48 H 1.09002 * 109.46702 * 209.99740 * 27 26 5 49 49 H 1.08996 * 109.47156 * 330.00057 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1887 1.2032 0.0000 4 6 3.5736 1.1961 0.0049 5 6 4.2290 -0.0334 -0.0006 6 7 5.6253 -0.0927 -0.0012 7 6 6.3391 0.8406 -0.6614 8 8 5.7743 1.7795 -1.1836 9 6 7.8251 0.7193 -0.7505 10 8 8.3792 -0.2746 -0.3289 11 7 8.5506 1.7139 -1.2992 12 6 10.0187 1.6557 -1.3021 13 6 10.5673 2.9430 -0.6785 14 6 9.9876 4.1507 -1.4184 15 6 10.5602 5.4376 -0.8207 16 6 10.0862 6.6198 -1.6262 17 1 9.4415 6.4684 -2.4793 18 6 10.4765 7.8946 -1.2746 19 7 11.2620 8.0789 -0.2361 20 14 9.8896 9.3600 -2.2734 21 1 8.4060 9.4177 -2.2428 22 1 10.4452 10.6089 -1.6933 23 1 10.3505 9.2182 -3.6779 24 6 8.4639 4.1558 -1.2749 25 6 7.8915 2.8823 -1.9052 26 6 3.4741 -1.1994 0.0003 27 6 4.1677 -2.5373 0.0006 28 7 2.1570 -1.1473 0.0003 29 1 -0.3633 0.0004 1.0276 30 1 -0.3634 0.8899 -0.5140 31 1 -0.3634 -0.8901 -0.5136 32 1 1.6473 2.1376 0.0004 33 1 4.1316 2.1207 0.0089 34 1 6.0807 -0.8055 0.4737 35 1 10.3788 1.5638 -2.3267 36 1 10.3516 0.7968 -0.7193 37 1 10.2817 2.9887 0.3724 38 1 11.6542 2.9527 -0.7609 39 1 10.2526 4.0914 -2.4740 40 1 10.2219 5.5413 0.2103 41 1 11.6491 5.3955 -0.8433 42 1 11.5369 8.9757 0.0111 43 1 8.1981 4.1901 -0.2184 44 1 8.0537 5.0290 -1.7823 45 1 6.8187 2.8329 -1.7190 46 1 8.0758 2.8915 -2.9795 47 1 4.3353 -2.8594 1.0283 48 1 3.5446 -3.2697 -0.5126 49 1 5.1248 -2.4504 -0.5136 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592294379.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:56:30 Heat of formation + Delta-G solvation = -28.922991 kcal Electronic energy + Delta-G solvation = -30082.245120 eV Core-core repulsion = 26009.455623 eV Total energy + Delta-G solvation = -4072.789496 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.66008 -40.48062 -38.91316 -37.62380 -36.00933 -34.05526 -33.55371 -32.16424 -32.06543 -30.80743 -29.39208 -28.33787 -27.20532 -25.44293 -23.92320 -23.22474 -22.79614 -22.05841 -21.27980 -20.51244 -19.30498 -18.25769 -17.60925 -16.76353 -16.70615 -16.27495 -16.07474 -15.74916 -15.43601 -15.02199 -14.62137 -14.48144 -14.21466 -14.07981 -13.69389 -13.64894 -13.58763 -13.42231 -13.02849 -12.84011 -12.68780 -12.50892 -12.46252 -12.34052 -12.17776 -11.87269 -11.37225 -11.20966 -11.16603 -11.03309 -10.79476 -10.73072 -10.52452 -10.20054 -9.99727 -9.87188 -9.70092 -9.43180 -9.04925 -8.88678 -8.59098 -8.51055 -8.35981 -6.01363 -4.03349 0.53318 0.94587 1.29168 2.03561 2.94702 3.26369 3.31507 3.36455 3.38414 3.40375 3.85183 4.03243 4.32716 4.44115 4.48290 4.66460 4.83781 5.14202 5.14316 5.18470 5.19527 5.27096 5.29075 5.33665 5.34378 5.38020 5.49704 5.55398 5.63433 5.66014 5.72746 5.75734 5.87104 5.89682 5.96497 6.17109 6.27311 6.33113 6.40648 6.49245 6.54803 6.66549 6.92140 6.97267 7.08709 7.24917 7.46753 7.64332 7.65819 7.77632 7.78758 7.97941 8.40536 9.02800 9.60476 11.09847 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.013901 B = 0.002396 C = 0.002096 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2013.790545 B =11683.776601 C =13354.349685 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C 0.116 3.884 3 C -0.158 4.158 4 C -0.069 4.069 5 C 0.083 3.917 6 N -0.638 5.638 7 C 0.514 3.486 8 O -0.485 6.485 9 C 0.507 3.493 10 O -0.532 6.532 11 N -0.562 5.562 12 C 0.107 3.893 13 C -0.129 4.129 14 C -0.085 4.085 15 C 0.028 3.972 16 C -0.517 4.517 17 H 0.056 0.944 18 C 0.056 3.944 19 N -0.896 5.896 20 Si 0.889 3.111 21 H -0.277 1.277 22 H -0.288 1.288 23 H -0.277 1.277 24 C -0.115 4.115 25 C 0.042 3.958 26 C 0.118 3.882 27 C -0.109 4.109 28 N -0.469 5.469 29 H 0.077 0.923 30 H 0.075 0.925 31 H 0.076 0.924 32 H 0.140 0.860 33 H 0.154 0.846 34 H 0.424 0.576 35 H 0.072 0.928 36 H 0.088 0.912 37 H 0.061 0.939 38 H 0.074 0.926 39 H 0.059 0.941 40 H 0.015 0.985 41 H 0.016 0.984 42 H 0.260 0.740 43 H 0.056 0.944 44 H 0.086 0.914 45 H 0.149 0.851 46 H 0.066 0.934 47 H 0.081 0.919 48 H 0.083 0.917 49 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.604 -19.553 0.964 25.670 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.022 4.022 3 C -0.178 4.178 4 C -0.096 4.096 5 C -0.013 4.013 6 N -0.285 5.285 7 C 0.297 3.703 8 O -0.360 6.360 9 C 0.288 3.712 10 O -0.411 6.411 11 N -0.294 5.294 12 C -0.015 4.015 13 C -0.167 4.167 14 C -0.103 4.103 15 C -0.009 4.009 16 C -0.555 4.555 17 H 0.074 0.926 18 C -0.145 4.145 19 N -0.535 5.535 20 Si 0.717 3.283 21 H -0.202 1.202 22 H -0.214 1.214 23 H -0.203 1.203 24 C -0.153 4.153 25 C -0.078 4.078 26 C -0.023 4.023 27 C -0.166 4.166 28 N -0.179 5.179 29 H 0.096 0.904 30 H 0.094 0.906 31 H 0.095 0.905 32 H 0.158 0.842 33 H 0.172 0.828 34 H 0.263 0.737 35 H 0.090 0.910 36 H 0.106 0.894 37 H 0.080 0.920 38 H 0.093 0.907 39 H 0.077 0.923 40 H 0.033 0.967 41 H 0.034 0.966 42 H 0.070 0.930 43 H 0.075 0.925 44 H 0.104 0.896 45 H 0.165 0.835 46 H 0.084 0.916 47 H 0.100 0.900 48 H 0.102 0.898 49 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -17.008 -20.024 0.881 26.287 hybrid contribution 0.654 1.599 -0.316 1.756 sum -16.354 -18.425 0.565 24.643 Atomic orbital electron populations 1.20691 0.88566 1.03535 1.03095 1.21290 0.97123 0.88146 0.95657 1.21915 0.94076 0.99490 1.02339 1.21816 0.94536 0.97959 0.95276 1.18536 0.82896 0.95002 1.04877 1.43093 1.04218 1.30226 1.50953 1.20638 0.89181 0.82191 0.78243 1.90357 1.71204 1.29454 1.44957 1.19539 0.86876 0.84306 0.80487 1.90745 1.71906 1.29661 1.48757 1.48203 1.07505 1.19833 1.53853 1.21894 0.77580 1.00086 1.01896 1.22039 1.00580 0.93848 1.00200 1.21252 0.94193 0.95672 0.99205 1.19114 0.95879 0.89866 0.95999 1.21198 1.29943 0.91278 1.13084 0.92629 1.25022 0.95218 0.99034 0.95188 1.69950 1.35195 1.21971 1.26395 0.86701 0.79072 0.82078 0.80406 1.20241 1.21373 1.20291 1.21857 0.96654 0.95938 1.00804 1.23543 1.02965 0.84109 0.97200 1.21123 0.89323 0.94328 0.97538 1.20738 1.00013 0.92450 1.03422 1.67352 1.07988 1.29356 1.13198 0.90391 0.90581 0.90510 0.84189 0.82824 0.73661 0.90969 0.89379 0.91980 0.90724 0.92279 0.96671 0.96615 0.92991 0.92536 0.89558 0.83502 0.91554 0.90000 0.89769 0.90643 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.64 10.16 36.00 0.37 -0.27 16 2 C 0.12 1.10 6.78 -82.56 -0.56 0.54 16 3 C -0.16 -1.46 9.73 -39.47 -0.38 -1.85 16 4 C -0.07 -0.74 8.81 -39.08 -0.34 -1.09 16 5 C 0.08 0.89 6.30 -83.59 -0.53 0.36 16 6 N -0.64 -6.57 4.74 -10.20 -0.05 -6.62 16 7 C 0.51 6.44 7.67 -11.63 -0.09 6.35 16 8 O -0.48 -6.67 10.48 5.47 0.06 -6.61 16 9 C 0.51 7.06 7.75 -11.63 -0.09 6.97 16 10 O -0.53 -7.96 15.93 5.50 0.09 -7.87 16 11 N -0.56 -8.15 2.98 -173.09 -0.52 -8.67 16 12 C 0.11 1.51 6.41 -3.71 -0.02 1.48 16 13 C -0.13 -2.08 5.36 -26.61 -0.14 -2.23 16 14 C -0.08 -1.62 2.10 -90.57 -0.19 -1.81 16 15 C 0.03 0.70 4.45 -27.88 -0.12 0.58 16 16 C -0.52 -14.00 8.39 -34.44 -0.29 -14.29 16 17 H 0.06 1.45 7.06 -52.48 -0.37 1.08 16 18 C 0.06 1.58 5.46 -17.82 -0.10 1.49 16 19 N -0.90 -26.52 13.29 55.43 0.74 -25.79 16 20 Si 0.89 21.31 29.54 -169.99 -5.02 16.29 16 21 H -0.28 -6.51 7.11 56.52 0.40 -6.10 16 22 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 23 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 24 C -0.11 -2.03 5.19 -26.61 -0.14 -2.17 16 25 C 0.04 0.62 6.28 -3.56 -0.02 0.60 16 26 C 0.12 1.19 6.80 -82.35 -0.56 0.63 16 27 C -0.11 -0.79 9.64 36.01 0.35 -0.44 16 28 N -0.47 -5.04 10.18 -5.57 -0.06 -5.09 16 29 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.08 0.36 8.08 -51.93 -0.42 -0.06 16 31 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.14 0.96 8.06 -52.49 -0.42 0.54 16 33 H 0.15 1.75 6.30 -52.49 -0.33 1.42 16 34 H 0.42 3.64 7.35 -40.82 -0.30 3.34 16 35 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 36 H 0.09 1.20 7.03 -51.93 -0.37 0.84 16 37 H 0.06 1.05 8.14 -51.93 -0.42 0.62 16 38 H 0.07 1.16 8.14 -51.92 -0.42 0.74 16 39 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 40 H 0.01 0.40 8.14 -51.93 -0.42 -0.02 16 41 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 42 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 43 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 44 H 0.09 1.64 6.91 -51.93 -0.36 1.29 16 45 H 0.15 2.17 3.74 -57.06 -0.21 1.95 16 46 H 0.07 0.95 8.14 -51.93 -0.42 0.52 16 47 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 48 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 49 H 0.07 0.50 7.16 -51.93 -0.37 0.13 16 LS Contribution 393.44 15.07 5.93 5.93 Total: -1.00 -31.74 393.44 -9.06 -40.80 By element: Atomic # 1 Polarization: 10.13 SS G_CDS: -7.36 Total: 2.77 kcal Atomic # 6 Polarization: -2.27 SS G_CDS: -2.87 Total: -5.14 kcal Atomic # 7 Polarization: -46.28 SS G_CDS: 0.11 Total: -46.17 kcal Atomic # 8 Polarization: -14.63 SS G_CDS: 0.14 Total: -14.48 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.02 Total: 16.29 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -31.74 -9.06 -40.80 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592294379.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.880 kcal (2) G-P(sol) polarization free energy of solvation -31.742 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.862 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.061 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.803 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.923 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds