Wall clock time and date at job start Wed Apr 1 2020 02:56:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38289 * 119.53437 * 2 1 4 4 C 1.38491 * 119.23982 * 179.76607 * 3 2 1 5 5 C 1.39331 * 118.35700 * 0.48216 * 4 3 2 6 6 N 1.39755 * 120.49412 * 179.75199 * 5 4 3 7 7 C 1.34774 * 119.99918 * 325.31600 * 6 5 4 8 8 O 1.21375 * 119.99783 * 4.69199 * 7 6 5 9 9 C 1.49352 * 119.99371 * 184.69270 * 7 6 5 10 10 O 1.21350 * 120.00716 * 6.28022 * 9 7 6 11 11 N 1.34790 * 119.99425 * 186.27896 * 9 7 6 12 12 C 1.46925 * 120.62606 * 175.32788 * 11 9 7 13 13 C 1.53197 * 108.88665 * 233.68093 * 12 11 9 14 14 C 1.53038 * 109.31397 * 305.29332 * 13 12 11 15 15 C 1.53006 * 109.45554 * 181.38863 * 14 13 12 16 16 C 1.50701 * 109.46500 * 175.00260 * 15 14 13 17 17 H 1.08003 * 120.00367 * 359.97438 * 16 15 14 18 18 C 1.37883 * 119.99837 * 180.02562 * 16 15 14 19 19 N 1.31510 * 119.99875 * 359.97438 * 18 16 15 20 20 Si 1.86800 * 120.00129 * 179.97438 * 18 16 15 21 21 H 1.48506 * 109.47033 * 59.99725 * 20 18 16 22 22 H 1.48495 * 109.47029 * 179.97438 * 20 18 16 23 23 H 1.48498 * 109.46917 * 299.99886 * 20 18 16 24 24 C 1.53044 * 109.53664 * 61.37130 * 14 13 12 25 25 C 1.47205 * 120.81413 * 355.47316 * 11 9 7 26 26 C 1.38908 * 119.01221 * 359.48006 * 5 4 3 27 27 C 1.50703 * 119.67056 * 180.27452 * 26 5 4 28 28 N 1.31808 * 120.65912 * 0.29945 * 26 5 4 29 29 H 1.08997 * 109.46960 * 270.02117 * 1 2 3 30 30 H 1.09001 * 109.47289 * 30.01349 * 1 2 3 31 31 H 1.08998 * 109.47329 * 150.01595 * 1 2 3 32 32 H 1.07994 * 120.37923 * 0.02658 * 3 2 1 33 33 H 1.07998 * 120.82113 * 180.23881 * 4 3 2 34 34 H 0.97003 * 119.99536 * 145.31717 * 6 5 4 35 35 H 1.08994 * 109.58627 * 113.82760 * 12 11 9 36 36 H 1.09001 * 109.59020 * 353.53945 * 12 11 9 37 37 H 1.09001 * 109.50007 * 65.25240 * 13 12 11 38 38 H 1.09009 * 109.49467 * 185.31116 * 13 12 11 39 39 H 1.08995 * 109.45944 * 301.36066 * 14 13 12 40 40 H 1.08996 * 109.47369 * 294.99960 * 15 14 13 41 41 H 1.08998 * 109.47115 * 55.00440 * 15 14 13 42 42 H 0.97001 * 120.00031 * 179.97438 * 19 18 16 43 43 H 1.08998 * 109.49801 * 58.58414 * 24 14 13 44 44 H 1.08998 * 109.49224 * 178.68180 * 24 14 13 45 45 H 1.09000 * 109.53517 * 6.53227 * 25 11 9 46 46 H 1.09002 * 109.67712 * 246.22650 * 25 11 9 47 47 H 1.08997 * 109.47042 * 90.00305 * 27 26 5 48 48 H 1.09002 * 109.46702 * 209.99740 * 27 26 5 49 49 H 1.08996 * 109.47156 * 330.00057 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1887 1.2032 0.0000 4 6 3.5736 1.1961 0.0049 5 6 4.2290 -0.0334 -0.0006 6 7 5.6253 -0.0927 -0.0012 7 6 6.3391 0.8406 -0.6614 8 8 5.7743 1.7795 -1.1836 9 6 7.8251 0.7193 -0.7505 10 8 8.3792 -0.2746 -0.3289 11 7 8.5506 1.7139 -1.2992 12 6 10.0187 1.6557 -1.3021 13 6 10.5673 2.9430 -0.6785 14 6 9.9876 4.1507 -1.4184 15 6 10.5602 5.4376 -0.8207 16 6 10.0862 6.6198 -1.6262 17 1 9.4415 6.4684 -2.4793 18 6 10.4765 7.8946 -1.2746 19 7 11.2620 8.0789 -0.2361 20 14 9.8896 9.3600 -2.2734 21 1 8.4060 9.4177 -2.2428 22 1 10.4452 10.6089 -1.6933 23 1 10.3505 9.2182 -3.6779 24 6 8.4639 4.1558 -1.2749 25 6 7.8915 2.8823 -1.9052 26 6 3.4741 -1.1994 0.0003 27 6 4.1677 -2.5373 0.0006 28 7 2.1570 -1.1473 0.0003 29 1 -0.3633 0.0004 1.0276 30 1 -0.3634 0.8899 -0.5140 31 1 -0.3634 -0.8901 -0.5136 32 1 1.6473 2.1376 0.0004 33 1 4.1316 2.1207 0.0089 34 1 6.0807 -0.8055 0.4737 35 1 10.3788 1.5638 -2.3267 36 1 10.3516 0.7968 -0.7193 37 1 10.2817 2.9887 0.3724 38 1 11.6542 2.9527 -0.7609 39 1 10.2526 4.0914 -2.4740 40 1 10.2219 5.5413 0.2103 41 1 11.6491 5.3955 -0.8433 42 1 11.5369 8.9757 0.0111 43 1 8.1981 4.1901 -0.2184 44 1 8.0537 5.0290 -1.7823 45 1 6.8187 2.8329 -1.7190 46 1 8.0758 2.8915 -2.9795 47 1 4.3353 -2.8594 1.0283 48 1 3.5446 -3.2697 -0.5126 49 1 5.1248 -2.4504 -0.5136 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592294379.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:56:29 Heat of formation + Delta-G solvation = -47.948583 kcal Electronic energy + Delta-G solvation = -30083.070131 eV Core-core repulsion = 26009.455623 eV Total energy + Delta-G solvation = -4073.614508 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.59847 -41.39211 -39.95795 -38.90853 -36.94392 -35.65018 -34.31052 -33.96711 -32.82267 -32.10139 -30.06516 -29.94016 -28.12240 -26.76031 -25.26789 -24.35337 -23.87817 -23.14790 -22.37843 -21.65165 -20.64132 -19.30708 -18.58136 -18.39644 -17.76364 -17.61580 -17.03480 -16.69595 -16.53680 -16.31657 -15.77386 -15.61505 -15.33078 -15.16152 -14.98781 -14.71691 -14.49022 -14.32997 -14.22910 -14.12368 -13.96034 -13.47634 -13.28601 -13.04234 -12.99570 -12.97419 -12.87144 -12.77465 -12.59218 -12.48820 -12.32507 -12.09636 -11.96507 -11.79760 -11.43679 -11.24059 -10.87929 -10.72825 -10.57988 -10.50573 -10.05113 -9.82562 -9.30229 -8.16742 -6.25954 -0.30441 0.17438 0.34879 1.05454 1.40911 1.43029 1.50541 1.90693 2.25156 2.42403 2.66020 2.99647 3.16838 3.23375 3.62696 3.78652 3.90585 3.96400 4.00700 4.04320 4.14162 4.18095 4.39640 4.48420 4.55403 4.61165 4.63494 4.66088 4.69438 4.79881 4.83249 4.84936 4.89171 4.96060 5.03570 5.07644 5.16784 5.18841 5.22291 5.28141 5.32463 5.38053 5.46889 5.55852 5.70101 5.77300 5.81850 5.89103 6.10496 6.29393 6.49531 6.69732 6.90377 6.93007 7.42528 8.94863 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.013901 B = 0.002396 C = 0.002096 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2013.790545 B =11683.776601 C =13354.349685 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 C 0.110 3.890 3 C -0.161 4.161 4 C -0.082 4.082 5 C 0.066 3.934 6 N -0.622 5.622 7 C 0.516 3.484 8 O -0.499 6.499 9 C 0.509 3.491 10 O -0.541 6.541 11 N -0.568 5.568 12 C 0.114 3.886 13 C -0.122 4.122 14 C -0.077 4.077 15 C 0.033 3.967 16 C -0.528 4.528 17 H 0.064 0.936 18 C -0.003 4.003 19 N -0.936 5.936 20 Si 0.958 3.042 21 H -0.267 1.267 22 H -0.288 1.288 23 H -0.267 1.267 24 C -0.108 4.108 25 C 0.055 3.945 26 C 0.114 3.886 27 C -0.108 4.108 28 N -0.488 5.488 29 H 0.090 0.910 30 H 0.094 0.906 31 H 0.075 0.925 32 H 0.163 0.837 33 H 0.144 0.856 34 H 0.432 0.568 35 H 0.090 0.910 36 H 0.097 0.903 37 H 0.050 0.950 38 H 0.080 0.920 39 H 0.063 0.937 40 H -0.015 1.015 41 H -0.011 1.011 42 H 0.261 0.739 43 H 0.042 0.958 44 H 0.071 0.929 45 H 0.155 0.845 46 H 0.078 0.922 47 H 0.097 0.903 48 H 0.087 0.913 49 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.320 -20.658 -0.099 27.611 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.028 4.028 3 C -0.181 4.181 4 C -0.109 4.109 5 C -0.030 4.030 6 N -0.269 5.269 7 C 0.299 3.701 8 O -0.376 6.376 9 C 0.291 3.709 10 O -0.419 6.419 11 N -0.300 5.300 12 C -0.008 4.008 13 C -0.160 4.160 14 C -0.096 4.096 15 C -0.004 4.004 16 C -0.566 4.566 17 H 0.082 0.918 18 C -0.200 4.200 19 N -0.577 5.577 20 Si 0.783 3.217 21 H -0.192 1.192 22 H -0.213 1.213 23 H -0.192 1.192 24 C -0.146 4.146 25 C -0.065 4.065 26 C -0.026 4.026 27 C -0.165 4.165 28 N -0.198 5.198 29 H 0.108 0.892 30 H 0.112 0.888 31 H 0.094 0.906 32 H 0.180 0.820 33 H 0.162 0.838 34 H 0.273 0.727 35 H 0.108 0.892 36 H 0.115 0.885 37 H 0.069 0.931 38 H 0.099 0.901 39 H 0.081 0.919 40 H 0.003 0.997 41 H 0.008 0.992 42 H 0.070 0.930 43 H 0.061 0.939 44 H 0.089 0.911 45 H 0.171 0.829 46 H 0.097 0.903 47 H 0.116 0.884 48 H 0.106 0.894 49 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -18.739 -21.169 -0.177 28.272 hybrid contribution 1.145 1.906 0.084 2.225 sum -17.594 -19.263 -0.093 26.088 Atomic orbital electron populations 1.20783 0.86377 1.04420 1.04095 1.21845 0.98671 0.87870 0.94388 1.22173 0.93573 1.00560 1.01772 1.21892 0.95410 0.97737 0.95895 1.18630 0.82769 0.95386 1.06201 1.42934 1.04225 1.29690 1.50097 1.20365 0.88565 0.82540 0.78625 1.90334 1.71114 1.30166 1.45964 1.19711 0.87449 0.83921 0.79775 1.90740 1.72326 1.29948 1.48914 1.48225 1.07710 1.19893 1.54180 1.21852 0.77405 0.98677 1.02848 1.21923 1.00952 0.93821 0.99279 1.21101 0.95149 0.94148 0.99187 1.19008 0.94305 0.92535 0.94516 1.21637 1.29541 0.92167 1.13271 0.91783 1.25947 0.95407 1.02325 0.96311 1.70095 1.36727 1.22604 1.28246 0.85598 0.78919 0.78121 0.79023 1.19179 1.21327 1.19187 1.21726 0.95521 0.97252 1.00101 1.23409 1.03058 0.82592 0.97463 1.21514 0.89348 0.95159 0.96614 1.20816 0.99979 0.91123 1.04565 1.67452 1.08288 1.30076 1.14023 0.89200 0.88765 0.90564 0.81989 0.83797 0.72690 0.89170 0.88492 0.93118 0.90139 0.91889 0.99697 0.99235 0.93032 0.93882 0.91067 0.82937 0.90341 0.88420 0.89438 0.90085 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.04 10.16 71.24 0.72 -0.32 16 2 C 0.11 1.91 6.78 42.56 0.29 2.20 16 3 C -0.16 -2.77 9.73 22.34 0.22 -2.55 16 4 C -0.08 -1.72 8.81 22.59 0.20 -1.52 16 5 C 0.07 1.35 6.30 38.30 0.24 1.59 16 6 N -0.62 -12.15 4.74 -304.53 -1.44 -13.60 16 7 C 0.52 12.41 7.67 87.24 0.67 13.07 16 8 O -0.50 -13.34 10.48 -3.33 -0.03 -13.38 16 9 C 0.51 13.49 7.75 87.24 0.68 14.16 16 10 O -0.54 -15.24 15.93 -3.25 -0.05 -15.29 16 11 N -0.57 -15.66 2.98 -819.88 -2.45 -18.10 16 12 C 0.11 3.00 6.41 86.36 0.55 3.56 16 13 C -0.12 -3.91 5.36 30.67 0.16 -3.74 16 14 C -0.08 -2.98 2.10 -10.76 -0.02 -3.00 16 15 C 0.03 1.71 4.45 29.85 0.13 1.84 16 16 C -0.53 -29.05 8.39 25.60 0.21 -28.84 16 17 H 0.06 3.34 7.06 -2.91 -0.02 3.32 16 18 C 0.00 -0.15 5.46 84.66 0.46 0.31 16 19 N -0.94 -56.85 13.29 21.45 0.28 -56.56 16 20 Si 0.96 43.86 29.54 68.60 2.03 45.89 16 21 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 22 H -0.29 -13.05 7.11 99.48 0.71 -12.34 16 23 H -0.27 -11.70 7.11 99.48 0.71 -11.00 16 24 C -0.11 -3.83 5.19 30.67 0.16 -3.68 16 25 C 0.05 1.57 6.28 86.31 0.54 2.11 16 26 C 0.11 2.16 6.80 42.72 0.29 2.45 16 27 C -0.11 -1.38 9.64 71.24 0.69 -0.69 16 28 N -0.49 -9.86 10.18 -171.53 -1.75 -11.60 16 29 H 0.09 0.75 8.14 -2.39 -0.02 0.73 16 30 H 0.09 0.64 8.08 -2.39 -0.02 0.62 16 31 H 0.08 0.82 8.14 -2.39 -0.02 0.80 16 32 H 0.16 1.92 8.06 -2.91 -0.02 1.90 16 33 H 0.14 3.28 6.30 -2.91 -0.02 3.26 16 34 H 0.43 6.84 7.35 -92.71 -0.68 6.16 16 35 H 0.09 2.11 8.14 -2.39 -0.02 2.09 16 36 H 0.10 2.45 7.03 -2.39 -0.02 2.43 16 37 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 38 H 0.08 2.48 8.14 -2.38 -0.02 2.46 16 39 H 0.06 2.39 8.14 -2.39 -0.02 2.37 16 40 H -0.02 -0.87 8.14 -2.39 -0.02 -0.89 16 41 H -0.01 -0.60 8.14 -2.39 -0.02 -0.62 16 42 H 0.26 15.02 8.31 -92.71 -0.77 14.25 16 43 H 0.04 1.62 8.14 -2.39 -0.02 1.60 16 44 H 0.07 2.73 6.91 -2.39 -0.02 2.71 16 45 H 0.15 4.35 3.74 -83.62 -0.31 4.03 16 46 H 0.08 2.08 8.14 -2.39 -0.02 2.06 16 47 H 0.10 0.94 8.14 -2.39 -0.02 0.92 16 48 H 0.09 1.07 8.14 -2.39 -0.02 1.05 16 49 H 0.08 0.94 7.16 -2.39 -0.02 0.92 16 Total: -1.00 -68.92 393.44 2.78 -66.14 By element: Atomic # 1 Polarization: 19.55 SS G_CDS: -0.01 Total: 19.54 kcal Atomic # 6 Polarization: -9.23 SS G_CDS: 6.20 Total: -3.03 kcal Atomic # 7 Polarization: -94.51 SS G_CDS: -5.35 Total: -99.86 kcal Atomic # 8 Polarization: -28.58 SS G_CDS: -0.09 Total: -28.67 kcal Atomic # 14 Polarization: 43.86 SS G_CDS: 2.03 Total: 45.89 kcal Total: -68.92 2.78 -66.14 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592294379.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.188 kcal (2) G-P(sol) polarization free energy of solvation -68.917 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.729 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.781 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.136 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.949 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds