Wall clock time and date at job start Wed Apr 1 2020 04:40:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42904 * 114.00480 * 2 1 4 4 C 1.52991 * 109.47288 * 179.97438 * 3 2 1 5 5 H 1.09000 * 109.47301 * 55.11558 * 4 3 2 6 6 C 1.52999 * 109.47629 * 295.11352 * 4 3 2 7 7 N 1.46502 * 109.47344 * 175.11401 * 4 3 2 8 8 C 1.36536 * 124.77078 * 68.44662 * 7 4 3 9 9 C 1.50696 * 125.38215 * 0.02562 * 8 7 4 10 10 C 1.34326 * 109.23088 * 179.97438 * 8 7 4 11 11 C 1.46968 * 106.38340 * 0.02562 * 10 8 7 12 12 C 1.41838 * 127.08563 * 180.02562 * 11 10 8 13 13 C 1.38084 * 119.99624 * 41.66681 * 12 11 10 14 14 C 1.43206 * 119.99926 * 188.77658 * 13 12 11 15 15 N 9.22797 * 158.21356 * 126.34178 * 3 1 2 16 16 C 1.46949 * 120.00346 * 8.77637 * 13 12 11 17 17 O 1.21674 * 119.99550 * 7.58767 * 16 13 12 18 18 N 1.34775 * 120.00244 * 187.59047 * 16 13 12 19 19 C 1.46499 * 120.00163 * 180.02562 * 18 16 13 20 20 C 1.50703 * 109.47142 * 179.97438 * 19 18 16 21 21 H 1.08000 * 119.99798 * 359.97438 * 20 19 18 22 22 C 1.37875 * 119.99901 * 179.97438 * 20 19 18 23 23 N 1.31516 * 119.99836 * 359.97438 * 22 20 19 24 24 Si 1.86795 * 119.99987 * 180.02562 * 22 20 19 25 25 H 1.48497 * 109.47275 * 89.99945 * 24 22 20 26 26 H 1.48495 * 109.47104 * 209.99984 * 24 22 20 27 27 H 1.48503 * 109.47139 * 329.99786 * 24 22 20 28 28 C 1.34576 * 124.77492 * 248.15473 * 7 4 3 29 29 C 1.50703 * 125.95190 * 0.02562 * 28 7 4 30 30 H 1.09003 * 109.47091 * 300.00653 * 1 2 3 31 31 H 1.09004 * 109.46725 * 59.99831 * 1 2 3 32 32 H 1.08993 * 109.47039 * 180.02562 * 1 2 3 33 33 H 1.08999 * 109.46731 * 59.99788 * 3 2 1 34 34 H 1.08996 * 109.46634 * 299.99773 * 3 2 1 35 35 H 1.09000 * 109.46947 * 300.00423 * 6 4 3 36 36 H 1.08999 * 109.46661 * 60.00194 * 6 4 3 37 37 H 1.08993 * 109.47655 * 179.97438 * 6 4 3 38 38 H 1.08996 * 109.47472 * 95.11737 * 9 8 7 39 39 H 1.09006 * 109.46706 * 215.11533 * 9 8 7 40 40 H 1.08996 * 109.47458 * 335.11368 * 9 8 7 41 41 H 1.07997 * 126.80877 * 179.97438 * 10 8 7 42 42 H 1.07994 * 120.00307 * 221.67243 * 12 11 10 43 43 H 0.96999 * 119.99811 * 359.97438 * 18 16 13 44 44 H 1.09002 * 109.46453 * 299.99690 * 19 18 16 45 45 H 1.08994 * 109.47291 * 59.99466 * 19 18 16 46 46 H 0.97005 * 119.99958 * 179.97438 * 23 22 20 47 47 H 1.08995 * 109.46744 * 90.00245 * 29 28 7 48 48 H 1.09001 * 109.47043 * 210.00529 * 29 28 7 49 49 H 1.09005 * 109.47131 * 330.00864 * 29 28 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 0.0006 5 1 3.8516 0.5698 -0.8421 6 6 3.9951 0.5342 1.3070 7 7 4.1311 2.5178 -0.1170 8 6 4.0779 3.4824 0.8479 9 6 3.4029 3.3399 2.1877 10 6 4.7232 4.5778 0.4146 11 6 5.2164 4.2624 -0.9335 12 6 5.9588 5.1118 -1.7932 13 6 6.9749 5.8943 -1.2814 14 6 7.5984 6.8865 -2.1046 15 7 8.0916 7.6744 -2.7588 16 6 7.4166 5.7089 0.1078 17 8 6.9867 4.7787 0.7638 18 7 8.2978 6.5693 0.6553 19 6 8.7385 6.3841 2.0401 20 6 9.7160 7.4713 2.4058 21 1 9.9826 8.2245 1.6791 22 6 10.2700 7.5043 3.6679 23 7 9.9449 6.5873 4.5528 24 14 11.4810 8.8522 4.1214 25 1 10.7435 10.0112 4.6852 26 1 12.4398 8.3369 5.1315 27 1 12.2227 9.2801 2.9081 28 6 4.8125 2.9622 -1.1891 29 6 5.0850 2.1827 -2.4497 30 1 -0.3633 0.5139 0.8899 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3633 -1.0276 0.0005 33 1 1.6887 1.8463 0.8900 34 1 1.6887 1.8463 -0.8900 35 1 3.6790 1.1490 2.1498 36 1 3.5520 -0.4578 1.3945 37 1 5.0816 0.4477 1.3073 38 1 4.1373 3.0373 2.9342 39 1 2.9636 4.2948 2.4765 40 1 2.6197 2.5848 2.1216 41 1 4.8531 5.5066 0.9501 42 1 5.7293 5.1467 -2.8479 43 1 8.6407 7.3106 0.1322 44 1 7.8762 6.4316 2.7051 45 1 9.2219 5.4124 2.1407 46 1 10.3349 6.6103 5.4407 47 1 4.2770 2.3496 -3.1618 48 1 6.0276 2.5142 -2.8853 49 1 5.1476 1.1203 -2.2136 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000899893324.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:40:36 Heat of formation + Delta-G solvation = 15.574214 kcal Electronic energy + Delta-G solvation = -30181.402827 eV Core-core repulsion = 26110.542874 eV Total energy + Delta-G solvation = -4070.859953 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.49105 -38.99890 -38.35088 -36.33589 -35.22096 -34.03734 -33.15447 -32.46854 -32.24062 -29.57220 -28.91488 -27.81500 -27.23052 -25.98982 -25.18211 -23.47547 -22.52733 -21.87941 -20.51145 -19.37313 -18.71231 -17.96984 -16.88452 -16.49605 -16.28779 -16.08688 -15.61043 -15.17651 -14.89607 -14.45089 -14.42356 -14.29880 -14.16765 -13.75856 -13.45462 -13.30348 -13.18981 -13.13653 -12.99494 -12.96857 -12.62824 -12.51371 -12.27886 -12.20873 -12.02787 -11.99767 -11.93057 -11.81906 -11.64102 -11.61328 -11.28032 -10.92352 -10.89688 -10.83383 -10.27253 -10.11707 -9.70056 -9.33463 -8.99974 -8.68029 -7.91944 -7.60805 -7.40113 -6.12346 -4.18015 0.74830 2.35885 2.58532 2.90034 3.09502 3.28170 3.34224 3.37780 3.41648 3.55592 4.11009 4.18325 4.25377 4.31690 4.45476 4.49230 4.65327 4.71587 4.85469 4.88287 4.91397 4.98180 5.10948 5.12341 5.21718 5.24114 5.28622 5.36394 5.39348 5.47149 5.53244 5.61949 5.69566 5.73650 5.80861 5.92454 6.02604 6.12531 6.16288 6.48618 6.53899 6.60043 7.13936 7.35671 7.37198 7.46150 7.51193 7.58153 7.72443 7.74820 8.02402 8.70109 8.84585 9.17454 9.48498 10.97750 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.013174 B = 0.002638 C = 0.002289 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2124.939915 B =10610.898984 C =12228.689153 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.387 6.387 3 C 0.050 3.950 4 C 0.133 3.867 5 H 0.104 0.896 6 C -0.169 4.169 7 N -0.429 5.429 8 C -0.010 4.010 9 C -0.085 4.085 10 C -0.076 4.076 11 C -0.181 4.181 12 C 0.099 3.901 13 C -0.147 4.147 14 C 0.259 3.741 15 N -0.433 5.433 16 C 0.549 3.451 17 O -0.523 6.523 18 N -0.709 5.709 19 C 0.253 3.747 20 C -0.542 4.542 21 H 0.061 0.939 22 C 0.064 3.936 23 N -0.886 5.886 24 Si 0.901 3.099 25 H -0.279 1.279 26 H -0.284 1.284 27 H -0.273 1.273 28 C 0.075 3.925 29 C -0.091 4.091 30 H 0.043 0.957 31 H 0.042 0.958 32 H 0.089 0.911 33 H 0.063 0.937 34 H 0.056 0.944 35 H 0.075 0.925 36 H 0.078 0.922 37 H 0.067 0.933 38 H 0.073 0.927 39 H 0.075 0.925 40 H 0.060 0.940 41 H 0.139 0.861 42 H 0.130 0.870 43 H 0.387 0.613 44 H 0.029 0.971 45 H 0.028 0.972 46 H 0.265 0.735 47 H 0.074 0.926 48 H 0.083 0.917 49 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.381 -13.955 -11.230 27.134 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.305 6.305 3 C -0.027 4.027 4 C 0.030 3.970 5 H 0.122 0.878 6 C -0.227 4.227 7 N -0.108 5.108 8 C -0.115 4.115 9 C -0.142 4.142 10 C -0.099 4.099 11 C -0.189 4.189 12 C 0.074 3.926 13 C -0.154 4.154 14 C -0.054 4.054 15 N -0.110 5.110 16 C 0.333 3.667 17 O -0.401 6.401 18 N -0.357 5.357 19 C 0.133 3.867 20 C -0.580 4.580 21 H 0.079 0.921 22 C -0.139 4.139 23 N -0.524 5.524 24 Si 0.729 3.271 25 H -0.205 1.205 26 H -0.210 1.210 27 H -0.198 1.198 28 C -0.041 4.041 29 C -0.149 4.149 30 H 0.062 0.938 31 H 0.061 0.939 32 H 0.107 0.893 33 H 0.081 0.919 34 H 0.074 0.926 35 H 0.094 0.906 36 H 0.097 0.903 37 H 0.086 0.914 38 H 0.092 0.908 39 H 0.094 0.906 40 H 0.078 0.922 41 H 0.157 0.843 42 H 0.148 0.852 43 H 0.219 0.781 44 H 0.047 0.953 45 H 0.046 0.954 46 H 0.075 0.925 47 H 0.093 0.907 48 H 0.102 0.898 49 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -19.900 -13.939 -11.410 26.842 hybrid contribution 0.676 1.079 0.370 1.326 sum -19.224 -12.861 -11.040 25.629 Atomic orbital electron populations 1.22772 0.80355 1.02992 1.00257 1.87813 1.20157 1.27046 1.95519 1.22927 0.92944 0.85228 1.01627 1.21118 0.91625 0.82600 1.01676 0.87815 1.22310 1.02623 1.01626 0.96105 1.43277 1.42729 1.11360 1.13454 1.19888 1.09231 0.89474 0.92920 1.20512 0.99268 1.02471 0.91996 1.21576 0.97403 0.98234 0.92656 1.18155 1.09046 0.94406 0.97259 1.21051 0.86534 0.87446 0.97556 1.18547 1.01633 1.00558 0.94712 1.25775 0.93312 0.93142 0.93217 1.81240 1.09302 1.10902 1.09561 1.17586 0.80587 0.83559 0.84923 1.90855 1.56247 1.31181 1.61832 1.46496 1.43603 1.28604 1.16972 1.19080 0.94870 0.97281 0.75475 1.21258 1.26231 1.12082 0.98452 0.92057 1.24917 0.96712 0.96208 0.96056 1.69973 1.43334 1.33707 1.05362 0.86446 0.80729 0.81604 0.78360 1.20457 1.21013 1.19765 1.20608 0.98597 0.94548 0.90300 1.20435 1.03025 0.98922 0.92477 0.93817 0.93927 0.89300 0.91875 0.92605 0.90638 0.90300 0.91379 0.90810 0.90646 0.92171 0.84290 0.85241 0.78066 0.95305 0.95417 0.92547 0.90701 0.89772 0.91467 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.18 11.01 101.05 1.11 1.29 16 2 O -0.39 -3.14 10.23 -35.23 -0.36 -3.50 16 3 C 0.05 0.40 5.37 37.15 0.20 0.60 16 4 C 0.13 1.20 3.00 -67.93 -0.20 1.00 16 5 H 0.10 0.84 6.44 -51.93 -0.33 0.51 16 6 C -0.17 -1.55 8.91 37.16 0.33 -1.22 16 7 N -0.43 -4.94 2.57 -100.50 -0.26 -5.19 16 8 C -0.01 -0.14 6.38 -81.88 -0.52 -0.66 16 9 C -0.09 -0.92 8.46 36.00 0.30 -0.62 16 10 C -0.08 -1.16 7.68 -37.43 -0.29 -1.45 16 11 C -0.18 -2.50 4.81 -104.88 -0.50 -3.01 16 12 C 0.10 1.27 9.32 -38.26 -0.36 0.91 16 13 C -0.15 -2.32 5.87 -104.50 -0.61 -2.93 16 14 C 0.26 4.19 14.21 -22.45 -0.32 3.87 16 15 N -0.43 -7.59 18.54 41.86 0.78 -6.81 16 16 C 0.55 10.97 7.24 -12.73 -0.09 10.88 16 17 O -0.52 -11.46 11.91 5.21 0.06 -11.40 16 18 N -0.71 -15.71 5.50 -62.71 -0.34 -16.05 16 19 C 0.25 6.76 5.43 -5.19 -0.03 6.73 16 20 C -0.54 -15.12 9.28 -34.44 -0.32 -15.44 16 21 H 0.06 1.65 7.60 -52.49 -0.40 1.25 16 22 C 0.06 1.82 5.46 -17.82 -0.10 1.72 16 23 N -0.89 -26.17 13.29 55.43 0.74 -25.44 16 24 Si 0.90 21.41 29.54 -169.99 -5.02 16.39 16 25 H -0.28 -6.52 7.11 56.52 0.40 -6.11 16 26 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 27 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 28 C 0.07 0.88 6.95 -81.28 -0.56 0.31 16 29 C -0.09 -0.73 9.77 36.01 0.35 -0.38 16 30 H 0.04 0.21 8.14 -51.93 -0.42 -0.22 16 31 H 0.04 0.20 8.14 -51.93 -0.42 -0.23 16 32 H 0.09 0.36 8.14 -51.93 -0.42 -0.06 16 33 H 0.06 0.49 5.72 -51.93 -0.30 0.20 16 34 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 35 H 0.07 0.70 4.71 -51.93 -0.24 0.46 16 36 H 0.08 0.64 7.82 -51.93 -0.41 0.23 16 37 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 38 H 0.07 0.87 7.92 -51.93 -0.41 0.46 16 39 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 40 H 0.06 0.52 4.20 -51.93 -0.22 0.30 16 41 H 0.14 2.34 7.49 -52.49 -0.39 1.95 16 42 H 0.13 1.18 8.06 -52.49 -0.42 0.75 16 43 H 0.39 8.12 7.23 -40.82 -0.29 7.82 16 44 H 0.03 0.83 8.14 -51.93 -0.42 0.41 16 45 H 0.03 0.81 8.14 -51.93 -0.42 0.39 16 46 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 47 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 48 H 0.08 0.64 7.96 -51.93 -0.41 0.23 16 49 H 0.07 0.48 6.86 -51.93 -0.36 0.12 16 LS Contribution 405.61 15.07 6.11 6.11 Total: -1.00 -33.38 405.61 -7.04 -40.42 By element: Atomic # 1 Polarization: 11.00 SS G_CDS: -7.13 Total: 3.87 kcal Atomic # 6 Polarization: 3.21 SS G_CDS: -1.61 Total: 1.60 kcal Atomic # 7 Polarization: -54.40 SS G_CDS: 0.91 Total: -53.49 kcal Atomic # 8 Polarization: -14.60 SS G_CDS: -0.30 Total: -14.90 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.39 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -33.38 -7.04 -40.42 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000899893324.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.990 kcal (2) G-P(sol) polarization free energy of solvation -33.379 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.611 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.037 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.416 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.574 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds