Wall clock time and date at job start Wed Apr 1 2020 04:40:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42904 * 114.00480 * 2 1 4 4 C 1.52991 * 109.47288 * 179.97438 * 3 2 1 5 5 H 1.09000 * 109.47301 * 55.11558 * 4 3 2 6 6 C 1.52999 * 109.47629 * 295.11352 * 4 3 2 7 7 N 1.46502 * 109.47344 * 175.11401 * 4 3 2 8 8 C 1.36536 * 124.77078 * 68.44662 * 7 4 3 9 9 C 1.50696 * 125.38215 * 0.02562 * 8 7 4 10 10 C 1.34326 * 109.23088 * 179.97438 * 8 7 4 11 11 C 1.46968 * 106.38340 * 0.02562 * 10 8 7 12 12 C 1.41838 * 127.08563 * 180.02562 * 11 10 8 13 13 C 1.38084 * 119.99624 * 41.66681 * 12 11 10 14 14 C 1.43206 * 119.99926 * 188.77658 * 13 12 11 15 15 N 9.22797 * 158.21356 * 126.34178 * 3 1 2 16 16 C 1.46949 * 120.00346 * 8.77637 * 13 12 11 17 17 O 1.21674 * 119.99550 * 7.58767 * 16 13 12 18 18 N 1.34775 * 120.00244 * 187.59047 * 16 13 12 19 19 C 1.46499 * 120.00163 * 180.02562 * 18 16 13 20 20 C 1.50703 * 109.47142 * 179.97438 * 19 18 16 21 21 H 1.08000 * 119.99798 * 359.97438 * 20 19 18 22 22 C 1.37875 * 119.99901 * 179.97438 * 20 19 18 23 23 N 1.31516 * 119.99836 * 359.97438 * 22 20 19 24 24 Si 1.86795 * 119.99987 * 180.02562 * 22 20 19 25 25 H 1.48497 * 109.47275 * 89.99945 * 24 22 20 26 26 H 1.48495 * 109.47104 * 209.99984 * 24 22 20 27 27 H 1.48503 * 109.47139 * 329.99786 * 24 22 20 28 28 C 1.34576 * 124.77492 * 248.15473 * 7 4 3 29 29 C 1.50703 * 125.95190 * 0.02562 * 28 7 4 30 30 H 1.09003 * 109.47091 * 300.00653 * 1 2 3 31 31 H 1.09004 * 109.46725 * 59.99831 * 1 2 3 32 32 H 1.08993 * 109.47039 * 180.02562 * 1 2 3 33 33 H 1.08999 * 109.46731 * 59.99788 * 3 2 1 34 34 H 1.08996 * 109.46634 * 299.99773 * 3 2 1 35 35 H 1.09000 * 109.46947 * 300.00423 * 6 4 3 36 36 H 1.08999 * 109.46661 * 60.00194 * 6 4 3 37 37 H 1.08993 * 109.47655 * 179.97438 * 6 4 3 38 38 H 1.08996 * 109.47472 * 95.11737 * 9 8 7 39 39 H 1.09006 * 109.46706 * 215.11533 * 9 8 7 40 40 H 1.08996 * 109.47458 * 335.11368 * 9 8 7 41 41 H 1.07997 * 126.80877 * 179.97438 * 10 8 7 42 42 H 1.07994 * 120.00307 * 221.67243 * 12 11 10 43 43 H 0.96999 * 119.99811 * 359.97438 * 18 16 13 44 44 H 1.09002 * 109.46453 * 299.99690 * 19 18 16 45 45 H 1.08994 * 109.47291 * 59.99466 * 19 18 16 46 46 H 0.97005 * 119.99958 * 179.97438 * 23 22 20 47 47 H 1.08995 * 109.46744 * 90.00245 * 29 28 7 48 48 H 1.09001 * 109.47043 * 210.00529 * 29 28 7 49 49 H 1.09005 * 109.47131 * 330.00864 * 29 28 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 0.0006 5 1 3.8516 0.5698 -0.8421 6 6 3.9951 0.5342 1.3070 7 7 4.1311 2.5178 -0.1170 8 6 4.0779 3.4824 0.8479 9 6 3.4029 3.3399 2.1877 10 6 4.7232 4.5778 0.4146 11 6 5.2164 4.2624 -0.9335 12 6 5.9588 5.1118 -1.7932 13 6 6.9749 5.8943 -1.2814 14 6 7.5984 6.8865 -2.1046 15 7 8.0916 7.6744 -2.7588 16 6 7.4166 5.7089 0.1078 17 8 6.9867 4.7787 0.7638 18 7 8.2978 6.5693 0.6553 19 6 8.7385 6.3841 2.0401 20 6 9.7160 7.4713 2.4058 21 1 9.9826 8.2245 1.6791 22 6 10.2700 7.5043 3.6679 23 7 9.9449 6.5873 4.5528 24 14 11.4810 8.8522 4.1214 25 1 10.7435 10.0112 4.6852 26 1 12.4398 8.3369 5.1315 27 1 12.2227 9.2801 2.9081 28 6 4.8125 2.9622 -1.1891 29 6 5.0850 2.1827 -2.4497 30 1 -0.3633 0.5139 0.8899 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3633 -1.0276 0.0005 33 1 1.6887 1.8463 0.8900 34 1 1.6887 1.8463 -0.8900 35 1 3.6790 1.1490 2.1498 36 1 3.5520 -0.4578 1.3945 37 1 5.0816 0.4477 1.3073 38 1 4.1373 3.0373 2.9342 39 1 2.9636 4.2948 2.4765 40 1 2.6197 2.5848 2.1216 41 1 4.8531 5.5066 0.9501 42 1 5.7293 5.1467 -2.8479 43 1 8.6407 7.3106 0.1322 44 1 7.8762 6.4316 2.7051 45 1 9.2219 5.4124 2.1407 46 1 10.3349 6.6103 5.4407 47 1 4.2770 2.3496 -3.1618 48 1 6.0276 2.5142 -2.8853 49 1 5.1476 1.1203 -2.2136 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000899893324.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:40:35 Heat of formation + Delta-G solvation = -5.581542 kcal Electronic energy + Delta-G solvation = -30182.320209 eV Core-core repulsion = 26110.542874 eV Total energy + Delta-G solvation = -4071.777335 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -42.47889 -40.50939 -39.00452 -37.66289 -36.43648 -35.67446 -34.29625 -34.13955 -33.47217 -30.56677 -29.93618 -29.07159 -28.36053 -26.68728 -26.28762 -24.95822 -23.86107 -22.86828 -22.12574 -20.40687 -20.13913 -19.16772 -18.12673 -17.55618 -17.25959 -16.97793 -16.90517 -16.41306 -16.15918 -16.07908 -15.86951 -15.38387 -15.19797 -14.66135 -14.58869 -14.51164 -14.25969 -14.12943 -14.10143 -14.01590 -13.78031 -13.69788 -13.65912 -13.54411 -13.29870 -12.92850 -12.91668 -12.83981 -12.79616 -12.72315 -12.57244 -12.40977 -12.25851 -12.07748 -11.64836 -11.48750 -10.96224 -10.79557 -10.67002 -10.44311 -9.73525 -8.84491 -8.48580 -8.29776 -6.45233 -0.38482 1.35837 1.39946 1.41976 1.53233 1.61747 1.76550 1.78816 2.17598 2.32945 2.67382 2.77406 2.91669 3.04365 3.06763 3.56243 3.78976 3.88840 3.93551 4.02295 4.08799 4.17912 4.36828 4.39353 4.43723 4.53282 4.56258 4.63790 4.68931 4.69736 4.78747 4.79689 4.87603 4.88395 4.90280 5.02194 5.08989 5.15063 5.18944 5.25644 5.30330 5.43035 5.46735 5.51900 5.72711 5.87367 6.05762 6.07742 6.31958 6.49577 6.51102 6.64883 6.95602 7.23424 7.54237 8.81846 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.013174 B = 0.002638 C = 0.002289 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2124.939915 B =10610.898984 C =12228.689153 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.401 6.401 3 C 0.058 3.942 4 C 0.129 3.871 5 H 0.121 0.879 6 C -0.167 4.167 7 N -0.426 5.426 8 C -0.014 4.014 9 C -0.084 4.084 10 C -0.109 4.109 11 C -0.222 4.222 12 C 0.153 3.847 13 C -0.184 4.184 14 C 0.281 3.719 15 N -0.463 5.463 16 C 0.550 3.450 17 O -0.548 6.548 18 N -0.717 5.717 19 C 0.276 3.724 20 C -0.561 4.561 21 H 0.070 0.930 22 C 0.010 3.990 23 N -0.924 5.924 24 Si 0.978 3.022 25 H -0.269 1.269 26 H -0.278 1.278 27 H -0.264 1.264 28 C 0.100 3.900 29 C -0.094 4.094 30 H 0.048 0.952 31 H 0.051 0.949 32 H 0.101 0.899 33 H 0.062 0.938 34 H 0.062 0.938 35 H 0.070 0.930 36 H 0.092 0.908 37 H 0.050 0.950 38 H 0.059 0.941 39 H 0.078 0.922 40 H 0.085 0.915 41 H 0.109 0.891 42 H 0.180 0.820 43 H 0.392 0.608 44 H -0.005 1.005 45 H -0.009 1.009 46 H 0.270 0.730 47 H 0.105 0.895 48 H 0.092 0.908 49 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.703 -15.100 -13.396 29.640 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.319 6.319 3 C -0.020 4.020 4 C 0.028 3.972 5 H 0.139 0.861 6 C -0.224 4.224 7 N -0.104 5.104 8 C -0.119 4.119 9 C -0.141 4.141 10 C -0.133 4.133 11 C -0.229 4.229 12 C 0.129 3.871 13 C -0.193 4.193 14 C -0.032 4.032 15 N -0.141 5.141 16 C 0.338 3.662 17 O -0.428 6.428 18 N -0.366 5.366 19 C 0.153 3.847 20 C -0.598 4.598 21 H 0.088 0.912 22 C -0.190 4.190 23 N -0.563 5.563 24 Si 0.801 3.199 25 H -0.194 1.194 26 H -0.203 1.203 27 H -0.188 1.188 28 C -0.017 4.017 29 C -0.151 4.151 30 H 0.067 0.933 31 H 0.069 0.931 32 H 0.120 0.880 33 H 0.080 0.920 34 H 0.080 0.920 35 H 0.089 0.911 36 H 0.111 0.889 37 H 0.070 0.930 38 H 0.078 0.922 39 H 0.097 0.903 40 H 0.103 0.897 41 H 0.127 0.873 42 H 0.197 0.803 43 H 0.226 0.774 44 H 0.013 0.987 45 H 0.009 0.991 46 H 0.078 0.922 47 H 0.124 0.876 48 H 0.111 0.889 49 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -21.256 -15.096 -13.604 29.407 hybrid contribution 0.829 1.163 1.078 1.790 sum -20.426 -13.933 -12.527 27.718 Atomic orbital electron populations 1.22960 0.78945 1.04139 1.00935 1.87787 1.21676 1.26834 1.95626 1.22781 0.91841 0.85480 1.01881 1.21332 0.92575 0.81167 1.02147 0.86097 1.22284 1.01572 1.02392 0.96196 1.43521 1.42108 1.11885 1.12909 1.20104 1.08691 0.89316 0.93805 1.20542 0.99452 1.03505 0.90576 1.21506 0.99557 0.98196 0.94003 1.18389 1.11064 0.96246 0.97230 1.21561 0.82726 0.83388 0.99422 1.17936 1.04859 1.04016 0.92442 1.25601 0.92496 0.92423 0.92632 1.81254 1.10365 1.11882 1.10606 1.18147 0.79171 0.82367 0.86481 1.90839 1.56762 1.32042 1.63138 1.46298 1.45039 1.29882 1.15409 1.18462 0.93135 0.95408 0.77651 1.21589 1.26633 1.12478 0.99141 0.91227 1.25941 0.98561 0.98717 0.95802 1.70111 1.44569 1.35671 1.05913 0.85256 0.78056 0.78258 0.78284 1.19432 1.20322 1.18795 1.21279 0.95513 0.93848 0.91103 1.20673 1.04595 0.99060 0.90815 0.93321 0.93079 0.88013 0.92004 0.91998 0.91122 0.88885 0.93040 0.92180 0.90316 0.89686 0.87286 0.80342 0.77414 0.98677 0.99093 0.92155 0.87636 0.88921 0.90101 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 11.01 113.37 1.25 1.46 16 2 O -0.40 -5.37 10.23 -148.98 -1.52 -6.89 16 3 C 0.06 0.76 5.37 71.98 0.39 1.15 16 4 C 0.13 2.03 3.00 44.99 0.14 2.16 16 5 H 0.12 1.53 6.44 -2.39 -0.02 1.51 16 6 C -0.17 -2.84 8.91 71.98 0.64 -2.20 16 7 N -0.43 -9.10 2.57 -471.87 -1.21 -10.31 16 8 C -0.01 -0.37 6.38 40.93 0.26 -0.11 16 9 C -0.08 -1.85 8.46 71.23 0.60 -1.25 16 10 C -0.11 -3.50 7.68 23.66 0.18 -3.31 16 11 C -0.22 -5.91 4.81 -20.03 -0.10 -6.01 16 12 C 0.15 3.63 9.32 23.12 0.22 3.85 16 13 C -0.18 -5.83 5.87 -19.78 -0.12 -5.94 16 14 C 0.28 9.01 14.21 88.33 1.26 10.27 16 15 N -0.46 -16.11 18.54 19.01 0.35 -15.76 16 16 C 0.55 23.15 7.24 86.53 0.63 23.78 16 17 O -0.55 -25.53 11.91 -4.26 -0.05 -25.58 16 18 N -0.72 -33.68 5.50 -470.55 -2.59 -36.27 16 19 C 0.28 15.73 5.43 85.63 0.46 16.19 16 20 C -0.56 -32.40 9.28 25.60 0.24 -32.16 16 21 H 0.07 3.82 7.60 -2.91 -0.02 3.80 16 22 C 0.01 0.57 5.46 84.65 0.46 1.03 16 23 N -0.92 -56.45 13.29 21.45 0.28 -56.17 16 24 Si 0.98 44.36 29.54 68.60 2.03 46.39 16 25 H -0.27 -11.74 7.11 99.48 0.71 -11.04 16 26 H -0.28 -12.24 7.11 99.48 0.71 -11.53 16 27 H -0.26 -11.50 7.11 99.48 0.71 -10.80 16 28 C 0.10 2.10 6.95 42.21 0.29 2.39 16 29 C -0.09 -1.09 9.77 71.24 0.70 -0.39 16 30 H 0.05 0.35 8.14 -2.39 -0.02 0.33 16 31 H 0.05 0.33 8.14 -2.38 -0.02 0.31 16 32 H 0.10 0.56 8.14 -2.39 -0.02 0.54 16 33 H 0.06 0.83 5.72 -2.39 -0.01 0.81 16 34 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 35 H 0.07 1.26 4.71 -2.39 -0.01 1.25 16 36 H 0.09 1.33 7.82 -2.39 -0.02 1.31 16 37 H 0.05 1.05 8.14 -2.39 -0.02 1.03 16 38 H 0.06 1.50 7.92 -2.39 -0.02 1.48 16 39 H 0.08 1.66 8.14 -2.38 -0.02 1.64 16 40 H 0.08 1.41 4.20 -2.39 -0.01 1.40 16 41 H 0.11 4.06 7.49 -2.91 -0.02 4.04 16 42 H 0.18 2.45 8.06 -2.91 -0.02 2.42 16 43 H 0.39 17.26 7.23 -92.71 -0.67 16.59 16 44 H 0.00 -0.29 8.14 -2.39 -0.02 -0.31 16 45 H -0.01 -0.56 8.14 -2.39 -0.02 -0.58 16 46 H 0.27 15.30 8.31 -92.70 -0.77 14.53 16 47 H 0.11 0.69 8.14 -2.39 -0.02 0.67 16 48 H 0.09 1.00 7.96 -2.39 -0.02 0.98 16 49 H 0.08 0.78 6.86 -2.38 -0.02 0.76 16 Total: -1.00 -76.92 405.61 5.10 -71.82 By element: Atomic # 1 Polarization: 21.56 SS G_CDS: 0.31 Total: 21.88 kcal Atomic # 6 Polarization: 3.40 SS G_CDS: 7.49 Total: 10.89 kcal Atomic # 7 Polarization: -115.34 SS G_CDS: -3.16 Total: -118.50 kcal Atomic # 8 Polarization: -30.89 SS G_CDS: -1.58 Total: -32.47 kcal Atomic # 14 Polarization: 44.36 SS G_CDS: 2.03 Total: 46.39 kcal Total: -76.92 5.10 -71.82 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000899893324.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.234 kcal (2) G-P(sol) polarization free energy of solvation -76.916 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.682 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.100 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.815 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.582 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds