Wall clock time and date at job start Wed Apr 1 2020 04:40:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42899 * 114.00128 * 2 1 4 4 C 1.52992 * 109.47537 * 179.97438 * 3 2 1 5 5 H 1.09005 * 109.47313 * 59.96864 * 4 3 2 6 6 C 1.53001 * 109.47076 * 299.97419 * 4 3 2 7 7 N 1.46494 * 109.47637 * 179.97438 * 4 3 2 8 8 C 1.36540 * 124.77365 * 66.63752 * 7 4 3 9 9 C 1.50700 * 125.37836 * 359.92923 * 8 7 4 10 10 C 1.34325 * 109.23542 * 179.97438 * 8 7 4 11 11 C 1.46969 * 106.37939 * 359.97438 * 10 8 7 12 12 C 1.41841 * 127.08137 * 180.02562 * 11 10 8 13 13 C 1.38082 * 119.99798 * 17.07644 * 12 11 10 14 14 C 1.43198 * 120.00230 * 6.88096 * 13 12 11 15 15 N 8.49690 * 127.35634 * 15.00597 * 2 1 3 16 16 C 1.46951 * 119.99619 * 186.86983 * 13 12 11 17 17 O 1.21666 * 120.00262 * 0.02562 * 16 13 12 18 18 N 1.34774 * 119.99517 * 180.02562 * 16 13 12 19 19 C 1.46505 * 119.99764 * 180.02562 * 18 16 13 20 20 C 1.50699 * 109.46909 * 179.97438 * 19 18 16 21 21 H 1.08000 * 120.00634 * 0.02562 * 20 19 18 22 22 C 1.37882 * 119.99934 * 180.02562 * 20 19 18 23 23 N 1.31519 * 119.99660 * 0.02562 * 22 20 19 24 24 Si 1.86798 * 120.00183 * 180.02562 * 22 20 19 25 25 H 1.48505 * 109.46913 * 0.02562 * 24 22 20 26 26 H 1.48508 * 109.46987 * 119.99850 * 24 22 20 27 27 H 1.48499 * 109.47395 * 240.00130 * 24 22 20 28 28 C 1.34577 * 124.77440 * 246.33996 * 7 4 3 29 29 C 1.50697 * 125.95401 * 0.03145 * 28 7 4 30 30 H 1.09004 * 109.46942 * 299.99811 * 1 2 3 31 31 H 1.08997 * 109.47115 * 60.00249 * 1 2 3 32 32 H 1.09003 * 109.46780 * 180.02562 * 1 2 3 33 33 H 1.08998 * 109.47149 * 59.99486 * 3 2 1 34 34 H 1.09006 * 109.46938 * 300.00275 * 3 2 1 35 35 H 1.09006 * 109.47301 * 179.97438 * 6 4 3 36 36 H 1.08991 * 109.47144 * 299.99771 * 6 4 3 37 37 H 1.09005 * 109.47134 * 60.00196 * 6 4 3 38 38 H 1.09004 * 109.46781 * 95.07755 * 9 8 7 39 39 H 1.09000 * 109.47124 * 215.07757 * 9 8 7 40 40 H 1.09002 * 109.47231 * 335.07633 * 9 8 7 41 41 H 1.07998 * 126.81049 * 180.02562 * 10 8 7 42 42 H 1.08003 * 119.99716 * 197.08399 * 12 11 10 43 43 H 0.97004 * 120.00567 * 0.02562 * 18 16 13 44 44 H 1.08996 * 109.47185 * 300.00089 * 19 18 16 45 45 H 1.09000 * 109.47075 * 60.00750 * 19 18 16 46 46 H 0.97003 * 119.99765 * 179.97438 * 23 22 20 47 47 H 1.08998 * 109.47052 * 90.00050 * 29 28 7 48 48 H 1.08990 * 109.47593 * 210.00457 * 29 28 7 49 49 H 1.09000 * 109.46856 * 330.00784 * 29 28 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5354 1.1847 0.0006 5 1 3.8574 0.6431 -0.8889 6 6 3.9864 0.4262 1.2505 7 7 4.1313 2.5230 0.0000 8 6 4.0414 3.4159 1.0290 9 6 3.3180 3.1785 2.3296 10 6 4.6988 4.5397 0.6985 11 6 5.2413 4.3212 -0.6498 12 6 6.0118 5.2300 -1.4194 13 6 6.6216 6.3078 -0.8084 14 6 6.6006 6.4282 0.6183 15 7 6.5847 6.5237 1.7487 16 6 7.2922 7.3311 -1.6224 17 8 7.3098 7.2289 -2.8347 18 7 7.8878 8.3827 -1.0261 19 6 8.5559 9.4032 -1.8376 20 6 9.1353 10.4623 -0.9356 21 1 9.0181 10.3830 0.1351 22 6 9.8152 11.5326 -1.4772 23 7 9.9576 11.6294 -2.7810 24 14 10.5341 12.8450 -0.3591 25 1 10.2390 12.5054 1.0562 26 1 12.0046 12.9113 -0.5555 27 1 9.9307 14.1612 -0.6890 28 6 4.8492 3.0431 -1.0125 29 6 5.1683 2.3559 -2.3152 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 1.6886 1.8464 0.8899 34 1 1.6886 1.8464 -0.8900 35 1 5.0731 0.3398 1.2508 36 1 3.6645 0.9677 2.1400 37 1 3.5431 -0.5696 1.2510 38 1 4.0250 2.8216 3.0786 39 1 2.8676 4.1108 2.6702 40 1 2.5384 2.4315 2.1806 41 1 4.8078 5.4274 1.3038 42 1 6.1215 5.0790 -2.4832 43 1 7.8741 8.4641 -0.0595 44 1 9.3556 8.9411 -2.4163 45 1 7.8337 9.8590 -2.5150 46 1 10.4356 12.3826 -3.1621 47 1 4.3856 2.5734 -3.0419 48 1 6.1248 2.7178 -2.6921 49 1 5.2251 1.2795 -2.1537 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000899893327.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:40:39 Heat of formation + Delta-G solvation = -14.340335 kcal Electronic energy + Delta-G solvation = -29314.430600 eV Core-core repulsion = 25242.273455 eV Total energy + Delta-G solvation = -4072.157145 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.75824 -40.59960 -39.13722 -37.93247 -36.32770 -35.89652 -34.35368 -34.28091 -33.63651 -30.72002 -30.06791 -29.11944 -28.41638 -26.80113 -26.40431 -24.99340 -23.89124 -23.12973 -22.13874 -21.00076 -20.08427 -19.15755 -17.97738 -17.77793 -17.28471 -17.07100 -16.97384 -16.51090 -16.23043 -16.14531 -16.09388 -15.67571 -15.28493 -15.00748 -14.68117 -14.49286 -14.35110 -14.29222 -14.18403 -14.02184 -13.82300 -13.78916 -13.76194 -13.64011 -13.20165 -12.96920 -12.92164 -12.88728 -12.84438 -12.75242 -12.55236 -12.43071 -12.24973 -12.18547 -11.75250 -11.46834 -11.14809 -10.89592 -10.81083 -10.71517 -9.86869 -9.42399 -8.66147 -8.29219 -6.44848 -0.54013 1.14970 1.41474 1.42465 1.51567 1.56101 1.67585 1.75929 1.82559 2.32916 2.59841 2.78698 2.80609 3.05111 3.07978 3.44855 3.60520 3.72154 3.78438 3.88618 3.93526 4.02566 4.20991 4.30688 4.35369 4.45968 4.49445 4.54653 4.56891 4.60798 4.69495 4.71384 4.78275 4.79554 4.85812 4.88949 5.01735 5.11583 5.12550 5.20052 5.23821 5.28451 5.30750 5.46937 5.66299 5.72670 5.85662 5.99882 6.02646 6.21346 6.52129 6.64030 6.85584 7.22017 7.40648 8.82880 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.025115 B = 0.001912 C = 0.001831 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1114.592705 B =14638.667033 C =15289.169424 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.397 6.397 3 C 0.052 3.948 4 C 0.124 3.876 5 H 0.127 0.873 6 C -0.165 4.165 7 N -0.419 5.419 8 C 0.016 3.984 9 C -0.091 4.091 10 C -0.188 4.188 11 C -0.237 4.237 12 C 0.152 3.848 13 C -0.198 4.198 14 C 0.286 3.714 15 N -0.464 5.464 16 C 0.564 3.436 17 O -0.586 6.586 18 N -0.712 5.712 19 C 0.267 3.733 20 C -0.561 4.561 21 H 0.071 0.929 22 C 0.010 3.990 23 N -0.924 5.924 24 Si 0.981 3.019 25 H -0.263 1.263 26 H -0.274 1.274 27 H -0.274 1.274 28 C 0.126 3.874 29 C -0.104 4.104 30 H 0.050 0.950 31 H 0.048 0.952 32 H 0.102 0.898 33 H 0.065 0.935 34 H 0.058 0.942 35 H 0.061 0.939 36 H 0.072 0.928 37 H 0.094 0.906 38 H 0.080 0.920 39 H 0.080 0.920 40 H 0.088 0.912 41 H 0.130 0.870 42 H 0.169 0.831 43 H 0.396 0.604 44 H -0.001 1.001 45 H -0.002 1.002 46 H 0.270 0.730 47 H 0.103 0.897 48 H 0.097 0.903 49 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.851 -30.257 6.481 37.313 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.316 6.316 3 C -0.026 4.026 4 C 0.023 3.977 5 H 0.145 0.855 6 C -0.222 4.222 7 N -0.095 5.095 8 C -0.091 4.091 9 C -0.148 4.148 10 C -0.211 4.211 11 C -0.244 4.244 12 C 0.128 3.872 13 C -0.206 4.206 14 C -0.026 4.026 15 N -0.142 5.142 16 C 0.353 3.647 17 O -0.469 6.469 18 N -0.359 5.359 19 C 0.144 3.856 20 C -0.599 4.599 21 H 0.089 0.911 22 C -0.190 4.190 23 N -0.562 5.562 24 Si 0.804 3.196 25 H -0.187 1.187 26 H -0.199 1.199 27 H -0.200 1.200 28 C 0.007 3.993 29 C -0.161 4.161 30 H 0.068 0.932 31 H 0.067 0.933 32 H 0.121 0.879 33 H 0.083 0.917 34 H 0.076 0.924 35 H 0.080 0.920 36 H 0.091 0.909 37 H 0.112 0.888 38 H 0.098 0.902 39 H 0.099 0.901 40 H 0.106 0.894 41 H 0.148 0.852 42 H 0.186 0.814 43 H 0.230 0.770 44 H 0.017 0.983 45 H 0.016 0.984 46 H 0.079 0.921 47 H 0.122 0.878 48 H 0.116 0.884 49 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -20.833 -30.521 7.298 37.667 hybrid contribution 0.432 1.586 0.280 1.668 sum -20.401 -28.934 7.577 36.205 Atomic orbital electron populations 1.22968 0.78919 1.04220 1.00919 1.87786 1.21628 1.26548 1.95623 1.22822 0.92016 0.85744 1.01992 1.21511 0.92527 0.80017 1.03653 0.85526 1.22262 1.02113 1.01664 0.96179 1.43839 1.39622 1.13375 1.12687 1.20399 1.05735 0.89975 0.92948 1.20698 0.99614 1.03781 0.90713 1.22352 1.03721 0.99094 0.95925 1.18625 1.11893 0.96469 0.97385 1.21483 0.80903 0.85021 0.99828 1.17753 1.15781 1.02769 0.84265 1.25419 0.91992 0.92521 0.92622 1.81077 1.11302 1.09362 1.12445 1.17991 0.78141 0.81434 0.87156 1.90728 1.63161 1.78366 1.14679 1.46199 1.54995 1.24029 1.10687 1.18632 0.90786 0.85284 0.90861 1.21601 1.36732 1.07741 0.93847 0.91102 1.25960 0.95882 1.00388 0.96811 1.70117 1.41892 1.31873 1.12306 0.85168 0.77994 0.77797 0.78604 1.18682 1.19948 1.19960 1.21495 0.93404 0.92596 0.91840 1.20807 1.04820 1.00892 0.89560 0.93162 0.93319 0.87928 0.91675 0.92362 0.92003 0.90868 0.88774 0.90155 0.90126 0.89377 0.85199 0.81363 0.77001 0.98284 0.98376 0.92073 0.87841 0.88403 0.88729 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.13 11.01 113.37 1.25 1.38 16 2 O -0.40 -3.69 10.03 -148.98 -1.49 -5.18 16 3 C 0.05 0.44 5.41 71.98 0.39 0.83 16 4 C 0.12 1.12 3.04 44.99 0.14 1.25 16 5 H 0.13 0.78 6.44 -2.38 -0.02 0.76 16 6 C -0.16 -1.37 8.90 71.98 0.64 -0.73 16 7 N -0.42 -6.06 2.56 -471.88 -1.21 -7.27 16 8 C 0.02 0.30 6.36 40.93 0.26 0.56 16 9 C -0.09 -1.17 8.43 71.24 0.60 -0.57 16 10 C -0.19 -4.71 9.37 23.67 0.22 -4.49 16 11 C -0.24 -5.52 5.90 -20.03 -0.12 -5.64 16 12 C 0.15 4.04 9.19 23.12 0.21 4.25 16 13 C -0.20 -6.78 5.90 -19.79 -0.12 -6.89 16 14 C 0.29 10.06 10.94 88.35 0.97 11.02 16 15 N -0.46 -16.91 17.25 18.99 0.33 -16.59 16 16 C 0.56 24.71 7.74 86.53 0.67 25.38 16 17 O -0.59 -28.66 16.30 -4.24 -0.07 -28.73 16 18 N -0.71 -34.22 5.50 -470.55 -2.59 -36.81 16 19 C 0.27 15.39 5.43 85.63 0.46 15.86 16 20 C -0.56 -32.65 9.28 25.60 0.24 -32.41 16 21 H 0.07 3.91 7.60 -2.91 -0.02 3.89 16 22 C 0.01 0.56 5.46 84.66 0.46 1.02 16 23 N -0.92 -56.51 13.29 21.45 0.28 -56.22 16 24 Si 0.98 44.49 29.54 68.60 2.03 46.52 16 25 H -0.26 -11.45 7.11 99.48 0.71 -10.74 16 26 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 27 H -0.27 -12.03 7.11 99.48 0.71 -11.33 16 28 C 0.13 2.04 6.95 42.20 0.29 2.33 16 29 C -0.10 -0.88 9.75 71.23 0.69 -0.19 16 30 H 0.05 0.20 8.14 -2.38 -0.02 0.18 16 31 H 0.05 0.22 8.14 -2.39 -0.02 0.20 16 32 H 0.10 0.28 8.14 -2.39 -0.02 0.26 16 33 H 0.07 0.54 5.47 -2.39 -0.01 0.53 16 34 H 0.06 0.52 8.14 -2.38 -0.02 0.50 16 35 H 0.06 0.60 8.14 -2.38 -0.02 0.58 16 36 H 0.07 0.62 4.89 -2.39 -0.01 0.61 16 37 H 0.09 0.66 7.68 -2.38 -0.02 0.64 16 38 H 0.08 0.97 7.90 -2.38 -0.02 0.95 16 39 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 40 H 0.09 0.75 4.20 -2.39 -0.01 0.74 16 41 H 0.13 3.83 5.19 -2.91 -0.02 3.82 16 42 H 0.17 3.84 7.50 -2.91 -0.02 3.82 16 43 H 0.40 17.78 7.19 -92.71 -0.67 17.11 16 44 H 0.00 -0.05 8.14 -2.39 -0.02 -0.07 16 45 H 0.00 -0.11 8.14 -2.39 -0.02 -0.13 16 46 H 0.27 15.31 8.31 -92.71 -0.77 14.54 16 47 H 0.10 0.61 8.14 -2.39 -0.02 0.59 16 48 H 0.10 0.85 7.86 -2.39 -0.02 0.83 16 49 H 0.09 0.42 6.87 -2.39 -0.02 0.40 16 Total: -1.00 -77.79 405.25 4.87 -72.92 By element: Atomic # 1 Polarization: 18.06 SS G_CDS: 0.33 Total: 18.39 kcal Atomic # 6 Polarization: 5.71 SS G_CDS: 7.26 Total: 12.97 kcal Atomic # 7 Polarization: -113.70 SS G_CDS: -3.19 Total: -116.89 kcal Atomic # 8 Polarization: -32.35 SS G_CDS: -1.56 Total: -33.92 kcal Atomic # 14 Polarization: 44.49 SS G_CDS: 2.03 Total: 46.52 kcal Total: -77.79 4.87 -72.92 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000899893327.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.579 kcal (2) G-P(sol) polarization free energy of solvation -77.788 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.209 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.869 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.919 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.340 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds