Wall clock time and date at job start Wed Apr 1 2020 03:24:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38165 * 119.55237 * 2 1 4 4 C 1.39799 * 119.00577 * 180.02562 * 3 2 1 5 5 C 1.48148 * 120.92873 * 179.97438 * 4 3 2 6 6 O 1.21509 * 119.99828 * 31.89885 * 5 4 3 7 7 N 1.34773 * 120.00022 * 211.90805 * 5 4 3 8 8 C 1.47153 * 120.98889 * 5.55868 * 7 5 4 9 9 C 1.53304 * 108.36944 * 129.40913 * 8 7 5 10 10 O 1.42970 * 109.22563 * 52.35701 * 9 8 7 11 11 C 1.42893 * 114.20910 * 297.50192 * 10 9 8 12 12 C 1.52983 * 109.56703 * 302.52435 * 11 10 9 13 13 C 1.53191 * 109.34800 * 300.95848 * 12 11 10 14 14 N 1.46935 * 108.77220 * 305.42632 * 13 12 11 15 15 C 1.36943 * 120.63970 * 233.64560 * 14 13 12 16 16 H 1.07994 * 119.99756 * 34.31335 * 15 14 13 17 17 C 1.38808 * 120.00266 * 214.30767 * 15 14 13 18 18 N 1.31625 * 119.99668 * 17.67153 * 17 15 14 19 19 Si 1.86794 * 120.00488 * 197.66469 * 17 15 14 20 20 H 1.48498 * 109.46973 * 59.99910 * 19 17 15 21 21 H 1.48497 * 109.47607 * 180.02562 * 19 17 15 22 22 H 1.48499 * 109.46981 * 300.00278 * 19 17 15 23 23 C 1.46924 * 118.71923 * 53.66963 * 14 13 12 24 24 C 1.52995 * 109.54876 * 182.21778 * 11 10 9 25 25 C 1.47152 * 120.98622 * 185.28836 * 7 5 4 26 26 C 1.39841 * 118.15074 * 359.97438 * 4 3 2 27 27 C 1.38129 * 119.00482 * 0.02562 * 26 4 3 28 28 N 1.31797 * 119.55374 * 180.02562 * 2 1 3 29 29 H 1.09005 * 109.47065 * 269.99897 * 1 2 3 30 30 H 1.08998 * 109.47262 * 29.99952 * 1 2 3 31 31 H 1.08998 * 109.46892 * 150.00427 * 1 2 3 32 32 H 1.08005 * 120.49947 * 359.97438 * 3 2 1 33 33 H 1.08993 * 109.68680 * 249.12758 * 8 7 5 34 34 H 1.09007 * 109.68256 * 9.69374 * 8 7 5 35 35 H 1.08997 * 109.51064 * 172.28273 * 9 8 7 36 36 H 1.09001 * 109.51513 * 292.37917 * 9 8 7 37 37 H 1.09002 * 109.49167 * 60.91592 * 12 11 10 38 38 H 1.08995 * 109.49526 * 180.99034 * 12 11 10 39 39 H 1.08997 * 109.58741 * 185.63884 * 13 12 11 40 40 H 1.09001 * 109.70752 * 65.28098 * 13 12 11 41 41 H 0.97001 * 120.00081 * 180.02562 * 18 17 15 42 42 H 1.08994 * 109.58390 * 186.53875 * 23 14 13 43 43 H 1.09007 * 109.70240 * 66.18409 * 23 14 13 44 44 H 1.09003 * 109.49368 * 179.01068 * 24 11 10 45 45 H 1.08994 * 109.49242 * 299.06154 * 24 11 10 46 46 H 1.09002 * 109.67640 * 350.20301 * 25 7 5 47 47 H 1.08995 * 109.67774 * 110.73748 * 25 7 5 48 48 H 1.08000 * 120.49905 * 179.97438 * 26 4 3 49 49 H 1.07997 * 119.55190 * 179.97438 * 27 26 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1884 1.2019 0.0000 4 6 3.5864 1.1886 -0.0005 5 6 4.3599 2.4521 -0.0011 6 8 3.9153 3.4368 0.5549 7 7 5.5565 2.5093 -0.6185 8 6 6.0607 1.3695 -1.4008 9 6 6.4979 1.8839 -2.7772 10 8 7.3968 2.9823 -2.6056 11 6 6.8215 4.1129 -1.9478 12 6 5.5960 4.5912 -2.7286 13 6 6.0160 4.9636 -4.1540 14 7 7.1084 5.9438 -4.0843 15 6 7.0193 7.1366 -4.7510 16 1 6.0625 7.6265 -4.8559 17 6 8.1587 7.7162 -5.2920 18 7 9.2408 6.9905 -5.4788 19 14 8.1563 9.5259 -5.7550 20 1 7.8753 10.3451 -4.5487 21 1 9.4836 9.8972 -6.3079 22 1 7.1079 9.7739 -6.7770 23 6 8.2983 5.6192 -3.2859 24 6 7.8535 5.2398 -1.8700 25 6 6.3950 3.7157 -0.5352 26 6 4.2343 -0.0507 -0.0005 27 6 3.4741 -1.2039 -0.0005 28 7 2.1570 -1.1465 -0.0005 29 1 -0.3633 0.0000 1.0277 30 1 -0.3634 0.8900 -0.5138 31 1 -0.3633 -0.8900 -0.5138 32 1 1.6492 2.1377 -0.0004 33 1 6.9121 0.9209 -0.8891 34 1 5.2708 0.6278 -1.5200 35 1 6.9999 1.0844 -3.3220 36 1 5.6229 2.2127 -3.3379 37 1 4.8538 3.7937 -2.7648 38 1 5.1685 5.4642 -2.2356 39 1 5.1680 5.3985 -4.6830 40 1 6.3575 4.0727 -4.6811 41 1 10.0372 7.3956 -5.8564 42 1 8.9566 6.4868 -3.2420 43 1 8.8278 4.7813 -3.7395 44 1 7.4082 6.1078 -1.3838 45 1 8.7163 4.9037 -1.2951 46 1 5.8258 4.5278 -0.0830 47 1 7.2793 3.5072 0.0668 48 1 5.3129 -0.1052 -0.0013 49 1 3.9654 -2.1657 -0.0009 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000949212782.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:24:51 Heat of formation + Delta-G solvation = -0.275323 kcal Electronic energy + Delta-G solvation = -31511.316745 eV Core-core repulsion = 27439.769505 eV Total energy + Delta-G solvation = -4071.547240 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -41.32076 -40.17288 -38.68341 -36.31527 -34.88336 -33.59572 -32.96184 -32.64532 -31.16668 -29.89358 -28.96733 -28.04275 -27.30011 -24.86014 -23.93894 -23.66197 -22.86245 -22.17634 -20.99054 -19.57964 -19.02419 -17.79889 -16.99851 -16.87337 -16.48582 -16.13668 -15.74064 -15.30188 -15.12056 -14.89894 -14.76459 -14.69449 -14.42131 -13.87843 -13.69678 -13.56151 -13.48491 -13.34697 -13.01651 -12.86080 -12.64032 -12.39613 -12.09794 -11.98326 -11.76634 -11.53515 -11.37626 -11.08917 -10.83885 -10.70580 -10.55948 -10.41454 -10.26920 -10.18615 -10.10445 -9.91698 -9.71638 -9.56020 -9.38183 -9.29073 -8.52902 -8.44142 -6.55230 -5.77540 -3.25092 0.41974 0.67257 2.47522 2.64588 3.38896 3.39032 3.44698 3.46421 3.87357 3.92968 3.97149 4.33534 4.50604 4.51287 4.61658 4.71669 4.81146 4.95202 5.00878 5.05669 5.09959 5.20432 5.23316 5.30061 5.33737 5.39224 5.47757 5.52882 5.60905 5.63106 5.65404 5.66408 5.75610 5.82103 6.00588 6.17936 6.23816 6.25497 6.30271 6.49582 6.51871 6.63474 6.76429 7.01220 7.08999 7.32277 7.51266 7.54082 7.66193 7.83244 7.83765 8.50833 9.23978 9.85851 10.48228 11.30313 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.022010 B = 0.002608 C = 0.002516 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1271.856998 B =10733.105683 C =11127.189217 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C 0.126 3.874 3 C -0.118 4.118 4 C -0.076 4.076 5 C 0.559 3.441 6 O -0.526 6.526 7 N -0.599 5.599 8 C 0.057 3.943 9 C 0.043 3.957 10 O -0.354 6.354 11 C 0.118 3.882 12 C -0.153 4.153 13 C 0.153 3.847 14 N -0.588 5.588 15 C -0.261 4.261 16 H 0.060 0.940 17 C 0.011 3.989 18 N -0.896 5.896 19 Si 0.899 3.101 20 H -0.283 1.283 21 H -0.290 1.290 22 H -0.282 1.282 23 C 0.182 3.818 24 C -0.126 4.126 25 C 0.088 3.912 26 C -0.159 4.159 27 C 0.101 3.899 28 N -0.473 5.473 29 H 0.080 0.920 30 H 0.078 0.922 31 H 0.080 0.920 32 H 0.145 0.855 33 H 0.081 0.919 34 H 0.101 0.899 35 H 0.103 0.897 36 H 0.060 0.940 37 H 0.049 0.951 38 H 0.068 0.932 39 H 0.050 0.950 40 H 0.020 0.980 41 H 0.254 0.746 42 H 0.073 0.927 43 H 0.030 0.970 44 H 0.071 0.929 45 H 0.059 0.941 46 H 0.101 0.899 47 H 0.075 0.925 48 H 0.149 0.851 49 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.328 -17.418 11.718 23.396 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.011 4.011 3 C -0.139 4.139 4 C -0.087 4.087 5 C 0.346 3.654 6 O -0.403 6.403 7 N -0.332 5.332 8 C -0.066 4.066 9 C -0.035 4.035 10 O -0.273 6.273 11 C 0.078 3.922 12 C -0.192 4.192 13 C 0.026 3.974 14 N -0.310 5.310 15 C -0.391 4.391 16 H 0.078 0.922 17 C -0.189 4.189 18 N -0.538 5.538 19 Si 0.729 3.271 20 H -0.209 1.209 21 H -0.216 1.216 22 H -0.208 1.208 23 C 0.056 3.944 24 C -0.166 4.166 25 C -0.034 4.034 26 C -0.179 4.179 27 C -0.055 4.055 28 N -0.183 5.183 29 H 0.099 0.901 30 H 0.097 0.903 31 H 0.098 0.902 32 H 0.163 0.837 33 H 0.099 0.901 34 H 0.119 0.881 35 H 0.121 0.879 36 H 0.078 0.922 37 H 0.068 0.932 38 H 0.087 0.913 39 H 0.069 0.931 40 H 0.038 0.962 41 H 0.064 0.936 42 H 0.092 0.908 43 H 0.048 0.952 44 H 0.090 0.910 45 H 0.077 0.923 46 H 0.119 0.881 47 H 0.093 0.907 48 H 0.166 0.834 49 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -10.664 -17.577 11.859 23.734 hybrid contribution 0.449 1.558 -0.145 1.627 sum -10.215 -16.019 11.714 22.320 Atomic orbital electron populations 1.20750 0.88180 1.03862 1.03424 1.21318 0.97385 0.87722 0.94706 1.22100 0.93062 1.00184 0.98542 1.20346 0.94493 0.93722 1.00148 1.18222 0.80624 0.87423 0.79117 1.90796 1.68488 1.36067 1.44943 1.47988 1.18303 1.16719 1.50230 1.23071 1.00467 0.89243 0.93824 1.22927 0.95548 0.90635 0.94398 1.88088 1.36650 1.23574 1.78951 1.21670 0.94899 0.86717 0.88892 1.22531 0.96112 1.00295 1.00271 1.20776 0.92022 0.92832 0.91738 1.43937 1.16499 1.15975 1.54638 1.19043 0.94443 0.96112 1.29458 0.92203 1.25182 0.97606 0.98442 0.97714 1.70054 1.03344 1.34206 1.46216 0.86435 0.76758 0.85577 0.78352 1.20927 1.21632 1.20830 1.20560 0.89115 0.99359 0.85321 1.22196 0.96784 0.94917 1.02680 1.22483 0.94421 0.87388 0.99065 1.22636 1.02240 0.92451 1.00589 1.22757 0.89158 0.98369 0.95252 1.67407 1.10306 1.29444 1.11158 0.90099 0.90331 0.90154 0.83707 0.90084 0.88084 0.87892 0.92195 0.93218 0.91327 0.93115 0.96179 0.93581 0.90841 0.95170 0.91033 0.92278 0.88113 0.90669 0.83359 0.81936 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.69 10.17 36.00 0.37 -0.32 16 2 C 0.13 1.19 6.78 -82.64 -0.56 0.63 16 3 C -0.12 -1.24 9.34 -39.02 -0.36 -1.60 16 4 C -0.08 -0.84 5.41 -104.65 -0.57 -1.41 16 5 C 0.56 7.62 7.48 -12.19 -0.09 7.53 16 6 O -0.53 -8.95 16.30 5.36 0.09 -8.86 16 7 N -0.60 -7.61 2.53 -173.57 -0.44 -8.05 16 8 C 0.06 0.56 4.94 -3.53 -0.02 0.54 16 9 C 0.04 0.53 6.60 37.31 0.25 0.77 16 10 O -0.35 -5.85 9.01 -35.23 -0.32 -6.17 16 11 C 0.12 1.97 0.68 -90.73 -0.06 1.91 16 12 C -0.15 -2.74 4.31 -26.64 -0.11 -2.86 16 13 C 0.15 3.29 6.28 -3.71 -0.02 3.27 16 14 N -0.59 -14.81 2.95 -172.32 -0.51 -15.32 16 15 C -0.26 -7.21 9.50 -15.06 -0.14 -7.36 16 16 H 0.06 1.64 7.89 -52.49 -0.41 1.23 16 17 C 0.01 0.29 4.85 -17.43 -0.08 0.21 16 18 N -0.90 -26.12 11.73 55.49 0.65 -25.47 16 19 Si 0.90 21.71 29.59 -169.99 -5.03 16.68 16 20 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 21 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 22 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 23 C 0.18 4.32 5.05 -3.71 -0.02 4.30 16 24 C -0.13 -2.35 5.10 -26.64 -0.14 -2.49 16 25 C 0.09 1.27 5.27 -3.78 -0.02 1.25 16 26 C -0.16 -1.33 7.52 -39.02 -0.29 -1.63 16 27 C 0.10 0.81 11.17 -17.59 -0.20 0.62 16 28 N -0.47 -4.67 10.25 -9.52 -0.10 -4.77 16 29 H 0.08 0.46 8.14 -51.93 -0.42 0.03 16 30 H 0.08 0.42 8.08 -51.93 -0.42 0.00 16 31 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 32 H 0.15 1.46 8.02 -52.48 -0.42 1.03 16 33 H 0.08 0.67 7.97 -51.93 -0.41 0.26 16 34 H 0.10 0.81 4.52 -51.92 -0.23 0.57 16 35 H 0.10 1.03 8.14 -51.93 -0.42 0.61 16 36 H 0.06 0.79 6.29 -51.93 -0.33 0.46 16 37 H 0.05 0.82 6.16 -51.93 -0.32 0.50 16 38 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 39 H 0.05 1.09 7.93 -51.93 -0.41 0.68 16 40 H 0.02 0.45 7.83 -51.93 -0.41 0.04 16 41 H 0.25 7.17 8.31 -40.82 -0.34 6.83 16 42 H 0.07 1.92 6.57 -51.93 -0.34 1.58 16 43 H 0.03 0.77 7.83 -51.93 -0.41 0.37 16 44 H 0.07 1.33 8.14 -51.93 -0.42 0.91 16 45 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 46 H 0.10 1.57 7.05 -51.93 -0.37 1.20 16 47 H 0.08 0.99 8.13 -51.93 -0.42 0.57 16 48 H 0.15 0.95 5.74 -52.49 -0.30 0.65 16 49 H 0.16 0.79 8.06 -52.49 -0.42 0.37 16 LS Contribution 379.35 15.07 5.72 5.72 Total: -1.00 -33.47 379.35 -9.32 -42.78 By element: Atomic # 1 Polarization: 7.39 SS G_CDS: -7.30 Total: 0.09 kcal Atomic # 6 Polarization: 5.45 SS G_CDS: -2.08 Total: 3.37 kcal Atomic # 7 Polarization: -53.21 SS G_CDS: -0.40 Total: -53.61 kcal Atomic # 8 Polarization: -14.81 SS G_CDS: -0.23 Total: -15.04 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.03 Total: 16.68 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -33.47 -9.32 -42.78 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000949212782.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.507 kcal (2) G-P(sol) polarization free energy of solvation -33.465 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.041 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.316 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.782 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.275 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds