Wall clock time and date at job start Wed Apr 1 2020 04:49:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38630 * 120.32168 * 2 1 4 4 C 1.38585 * 118.48924 * 180.29799 * 3 2 1 5 5 C 1.39314 * 119.05710 * 359.47826 * 4 3 2 6 6 C 1.48173 * 119.72245 * 180.27665 * 5 4 3 7 7 O 1.21512 * 119.99702 * 0.25338 * 6 5 4 8 8 N 1.34772 * 119.99697 * 180.25320 * 6 5 4 9 9 C 1.47483 * 125.66639 * 0.02562 * 8 6 5 10 10 C 1.55024 * 104.90420 * 204.02276 * 9 8 6 11 11 C 1.54521 * 101.51711 * 323.62130 * 10 9 8 12 12 C 1.47191 * 125.66251 * 179.71490 * 8 6 5 13 13 C 1.52518 * 110.05621 * 153.09740 * 11 10 9 14 14 N 1.47309 * 108.38096 * 72.02645 * 13 11 10 15 15 C 1.36937 * 121.05931 * 229.39568 * 14 13 11 16 16 H 1.08000 * 120.00140 * 153.85496 * 15 14 13 17 17 C 1.38808 * 119.99772 * 333.84824 * 15 14 13 18 18 N 1.31622 * 120.00123 * 343.62859 * 17 15 14 19 19 Si 1.86803 * 119.99988 * 163.62970 * 17 15 14 20 20 H 1.48492 * 109.47049 * 60.00480 * 19 17 15 21 21 H 1.48504 * 109.47116 * 180.02562 * 19 17 15 22 22 H 1.48494 * 109.47153 * 299.99991 * 19 17 15 23 23 C 1.47168 * 117.88253 * 49.41078 * 14 13 11 24 24 C 1.53274 * 108.54026 * 308.89041 * 23 14 13 25 25 O 1.42068 * 110.33541 * 276.05114 * 11 10 9 26 26 N 1.32716 * 120.55071 * 0.52775 * 5 4 3 27 27 C 1.31520 * 121.64719 * 359.72818 * 26 5 4 28 28 C 1.50700 * 119.54949 * 179.97438 * 27 26 5 29 29 H 1.09005 * 109.47104 * 90.00172 * 1 2 3 30 30 H 1.09007 * 109.47140 * 210.00188 * 1 2 3 31 31 H 1.08999 * 109.47435 * 329.99828 * 1 2 3 32 32 H 1.08000 * 120.75802 * 0.02562 * 3 2 1 33 33 H 1.07998 * 120.47239 * 179.70461 * 4 3 2 34 34 H 1.08996 * 110.35460 * 322.88006 * 9 8 6 35 35 H 1.08997 * 110.35322 * 85.16582 * 9 8 6 36 36 H 1.09000 * 111.01396 * 81.67566 * 10 9 8 37 37 H 1.08999 * 111.01779 * 205.52083 * 10 9 8 38 38 H 1.08999 * 109.91003 * 297.86188 * 12 8 6 39 39 H 1.09002 * 109.91099 * 59.12130 * 12 8 6 40 40 H 1.09005 * 109.68169 * 191.74224 * 13 11 10 41 41 H 1.08996 * 109.68639 * 312.26756 * 13 11 10 42 42 H 0.97002 * 120.00001 * 179.97438 * 18 17 15 43 43 H 1.08998 * 109.62191 * 68.60470 * 23 14 13 44 44 H 1.08996 * 109.62400 * 188.97930 * 23 14 13 45 45 H 1.09006 * 109.50942 * 172.79864 * 24 23 14 46 46 H 1.08998 * 109.51565 * 292.95087 * 24 23 14 47 47 H 1.09006 * 109.46644 * 270.01789 * 28 27 26 48 48 H 1.09003 * 109.47075 * 30.01404 * 28 27 26 49 49 H 1.08998 * 109.47238 * 150.02215 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2068 1.1967 0.0000 4 6 3.5920 1.1524 -0.0063 5 6 4.2293 -0.0864 -0.0014 6 6 5.7097 -0.1510 -0.0018 7 8 6.3624 0.8739 -0.0018 8 7 6.3320 -1.3464 -0.0022 9 6 5.6663 -2.6624 -0.0027 10 6 6.7072 -3.6361 0.6069 11 6 8.0280 -3.0727 0.0360 12 6 7.7890 -1.5554 -0.0086 13 6 9.1867 -3.4094 0.9688 14 7 9.4670 -4.8514 0.8598 15 6 9.5871 -5.6343 1.9768 16 1 9.3720 -6.6912 1.9213 17 6 9.9855 -5.0694 3.1806 18 7 10.5518 -3.8814 3.1945 19 14 9.7178 -5.9953 4.7807 20 1 10.4469 -7.2880 4.7325 21 1 10.2261 -5.1818 5.9144 22 1 8.2672 -6.2518 4.9675 23 6 9.6141 -5.4240 -0.4880 24 6 8.4043 -5.0044 -1.3305 25 8 8.2583 -3.5821 -1.2701 26 7 3.5217 -1.2092 -0.0012 27 6 2.2065 -1.1960 -0.0004 28 6 1.4502 -2.4994 -0.0009 29 1 -0.3633 0.0000 -1.0277 30 1 -0.3634 -0.8900 0.5139 31 1 -0.3634 0.8899 0.5138 32 1 1.6845 2.1420 0.0004 33 1 4.1691 2.0652 -0.0113 34 1 4.7680 -2.6331 0.6139 35 1 5.4184 -2.9615 -1.0211 36 1 6.6990 -3.5855 1.6957 37 1 6.5360 -4.6564 0.2638 38 1 8.2201 -1.1359 -0.9176 39 1 8.2352 -1.0855 0.8679 40 1 10.0698 -2.8408 0.6773 41 1 8.9147 -3.1644 1.9955 42 1 10.8299 -3.4865 4.0358 43 1 10.5282 -5.0482 -0.9475 44 1 9.6580 -6.5110 -0.4212 45 1 8.5574 -5.3109 -2.3653 46 1 7.5051 -5.4796 -0.9384 47 1 1.2675 -2.8131 -1.0288 48 1 2.0378 -3.2607 0.5123 49 1 0.4982 -2.3673 0.5132 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000972466834.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:49:02 Heat of formation + Delta-G solvation = -20.499512 kcal Electronic energy + Delta-G solvation = -31351.103579 eV Core-core repulsion = 27278.679352 eV Total energy + Delta-G solvation = -4072.424227 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -42.03437 -41.17359 -39.87718 -37.59601 -36.27864 -34.99761 -34.04841 -33.26509 -32.82008 -30.90138 -29.49880 -29.10511 -28.56214 -27.14601 -25.34867 -24.53464 -23.52549 -23.32717 -22.59384 -20.92441 -20.41650 -18.97665 -18.79537 -17.80971 -17.37293 -16.95971 -16.86271 -16.54467 -16.21632 -16.00783 -15.80583 -15.61268 -15.28963 -15.22956 -14.94852 -14.56949 -14.39003 -14.19447 -14.04915 -13.70177 -13.66619 -13.58852 -13.50471 -13.14876 -13.11176 -12.92381 -12.79993 -12.63091 -12.50459 -12.34572 -12.29391 -12.19508 -11.86739 -11.82068 -11.48504 -11.17739 -10.78090 -10.76740 -10.49858 -10.31594 -9.95155 -9.65979 -8.73406 -7.89688 -5.36398 -0.42427 0.21133 1.46488 1.48861 1.55574 1.58361 1.73617 2.47823 2.71963 2.76775 2.92703 3.22799 3.38011 3.56891 3.62167 3.77114 3.87496 3.88772 3.92782 3.98751 4.19870 4.24679 4.31591 4.36971 4.48845 4.50999 4.56704 4.66198 4.69866 4.73790 4.77165 4.78316 4.86332 4.92002 4.93079 4.97688 5.03494 5.08654 5.14942 5.17830 5.20195 5.24968 5.26900 5.32465 5.48775 5.61222 5.71998 6.28682 6.30629 6.39641 6.65897 6.97587 7.05747 7.75097 8.30170 9.16564 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.013766 B = 0.002985 C = 0.002883 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2033.440157 B = 9377.099256 C = 9711.142712 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.106 4.106 3 C -0.078 4.078 4 C -0.121 4.121 5 C 0.055 3.945 6 C 0.573 3.427 7 O -0.577 6.577 8 N -0.595 5.595 9 C 0.124 3.876 10 C -0.138 4.138 11 C 0.097 3.903 12 C 0.128 3.872 13 C 0.177 3.823 14 N -0.608 5.608 15 C -0.258 4.258 16 H 0.077 0.923 17 C -0.051 4.051 18 N -0.938 5.938 19 Si 0.968 3.032 20 H -0.274 1.274 21 H -0.299 1.299 22 H -0.274 1.274 23 C 0.103 3.897 24 C 0.052 3.948 25 O -0.383 6.383 26 N -0.467 5.467 27 C 0.108 3.892 28 C -0.106 4.106 29 H 0.092 0.908 30 H 0.090 0.910 31 H 0.085 0.915 32 H 0.176 0.824 33 H 0.143 0.857 34 H 0.112 0.888 35 H 0.073 0.927 36 H 0.065 0.935 37 H 0.097 0.903 38 H 0.072 0.928 39 H 0.069 0.931 40 H -0.007 1.007 41 H 0.067 0.933 42 H 0.249 0.751 43 H 0.014 0.986 44 H 0.077 0.923 45 H 0.120 0.880 46 H 0.062 0.938 47 H 0.092 0.908 48 H 0.071 0.929 49 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.922 4.433 -8.631 26.744 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.108 4.108 3 C -0.103 4.103 4 C -0.142 4.142 5 C -0.082 4.082 6 C 0.362 3.638 7 O -0.457 6.457 8 N -0.326 5.326 9 C 0.002 3.998 10 C -0.177 4.177 11 C 0.055 3.945 12 C 0.005 3.995 13 C 0.050 3.950 14 N -0.332 5.332 15 C -0.387 4.387 16 H 0.095 0.905 17 C -0.247 4.247 18 N -0.584 5.584 19 Si 0.796 3.204 20 H -0.199 1.199 21 H -0.225 1.225 22 H -0.200 1.200 23 C -0.022 4.022 24 C -0.025 4.025 25 O -0.302 6.302 26 N -0.179 5.179 27 C -0.032 4.032 28 C -0.163 4.163 29 H 0.110 0.890 30 H 0.109 0.891 31 H 0.104 0.896 32 H 0.193 0.807 33 H 0.161 0.839 34 H 0.130 0.870 35 H 0.092 0.908 36 H 0.084 0.916 37 H 0.116 0.884 38 H 0.090 0.910 39 H 0.087 0.913 40 H 0.011 0.989 41 H 0.085 0.915 42 H 0.059 0.941 43 H 0.032 0.968 44 H 0.095 0.905 45 H 0.138 0.862 46 H 0.080 0.920 47 H 0.111 0.889 48 H 0.090 0.910 49 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -24.036 4.408 -8.659 25.925 hybrid contribution 0.875 0.525 1.221 1.591 sum -23.161 4.932 -7.438 24.821 Atomic orbital electron populations 1.20991 0.86832 1.05002 1.04225 1.21416 0.99800 0.92656 0.96918 1.21879 0.92174 1.00259 0.96022 1.22174 0.96419 0.97831 0.97782 1.20680 0.92113 0.91168 1.04239 1.18110 0.87262 0.81832 0.76551 1.90731 1.67157 1.34461 1.53354 1.48460 1.07080 1.06915 1.70137 1.22660 0.95992 0.79211 1.01930 1.23147 0.93806 1.00229 1.00483 1.22293 0.96013 0.91600 0.84608 1.21641 0.81236 0.94657 1.01992 1.20874 0.92091 0.84622 0.97367 1.44310 1.82667 1.04766 1.01475 1.19491 1.38547 0.93011 0.87700 0.90548 1.25821 0.98564 0.98339 1.01933 1.70181 1.43456 1.19010 1.25799 0.85334 0.78238 0.77827 0.79041 1.19938 1.22518 1.19989 1.21807 0.96107 0.98486 0.85827 1.23210 0.97715 0.80262 1.01350 1.87680 1.92669 1.23063 1.26825 1.67553 1.09231 1.29531 1.11614 1.21886 0.88592 0.97472 0.95293 1.20928 0.99844 0.91093 1.04397 0.88963 0.89114 0.89598 0.80680 0.83910 0.86982 0.90829 0.91619 0.88433 0.90998 0.91321 0.98930 0.91490 0.94146 0.96803 0.90467 0.86189 0.92007 0.88935 0.90953 0.87615 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.61 9.62 71.23 0.69 0.07 16 2 C -0.11 -1.47 5.91 -19.70 -0.12 -1.59 16 3 C -0.08 -1.21 9.85 22.45 0.22 -0.99 16 4 C -0.12 -2.85 9.63 22.61 0.22 -2.63 16 5 C 0.05 1.61 6.72 41.91 0.28 1.89 16 6 C 0.57 21.14 7.84 86.88 0.68 21.82 16 7 O -0.58 -24.34 16.65 -3.75 -0.06 -24.40 16 8 N -0.60 -21.78 3.33 -815.31 -2.72 -24.49 16 9 C 0.12 3.91 5.94 86.88 0.52 4.42 16 10 C -0.14 -4.96 5.91 31.80 0.19 -4.77 16 11 C 0.10 3.92 0.83 -10.21 -0.01 3.91 16 12 C 0.13 5.14 6.25 86.47 0.54 5.68 16 13 C 0.18 8.84 3.95 86.06 0.34 9.18 16 14 N -0.61 -30.34 2.94 -698.64 -2.06 -32.39 16 15 C -0.26 -13.82 9.66 84.03 0.81 -13.01 16 16 H 0.08 3.90 7.88 -2.91 -0.02 3.87 16 17 C -0.05 -2.84 4.96 84.86 0.42 -2.42 16 18 N -0.94 -56.05 11.13 21.65 0.24 -55.81 16 19 Si 0.97 44.42 29.58 68.60 2.03 46.45 16 20 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 21 H -0.30 -14.03 7.11 99.48 0.71 -13.32 16 22 H -0.27 -12.06 7.11 99.48 0.71 -11.36 16 23 C 0.10 4.19 6.72 86.34 0.58 4.77 16 24 C 0.05 1.72 6.76 72.07 0.49 2.20 16 25 O -0.38 -14.79 10.21 -148.97 -1.52 -16.31 16 26 N -0.47 -12.04 6.51 -173.08 -1.13 -13.17 16 27 C 0.11 1.99 6.78 42.68 0.29 2.28 16 28 C -0.11 -1.20 9.77 71.24 0.70 -0.51 16 29 H 0.09 0.31 8.14 -2.38 -0.02 0.29 16 30 H 0.09 0.28 5.95 -2.38 -0.01 0.27 16 31 H 0.09 0.26 8.09 -2.39 -0.02 0.25 16 32 H 0.18 1.40 8.06 -2.91 -0.02 1.37 16 33 H 0.14 3.38 7.64 -2.91 -0.02 3.35 16 34 H 0.11 3.32 5.89 -2.39 -0.01 3.31 16 35 H 0.07 2.21 8.14 -2.39 -0.02 2.19 16 36 H 0.07 2.59 7.86 -2.39 -0.02 2.57 16 37 H 0.10 3.27 5.98 -2.39 -0.01 3.26 16 38 H 0.07 2.91 8.06 -2.39 -0.02 2.89 16 39 H 0.07 2.96 7.79 -2.39 -0.02 2.94 16 40 H -0.01 -0.41 8.14 -2.38 -0.02 -0.43 16 41 H 0.07 3.74 5.99 -2.39 -0.01 3.72 16 42 H 0.25 14.58 8.31 -92.71 -0.77 13.81 16 43 H 0.01 0.60 8.14 -2.39 -0.02 0.58 16 44 H 0.08 2.88 7.96 -2.39 -0.02 2.86 16 45 H 0.12 3.13 8.14 -2.38 -0.02 3.11 16 46 H 0.06 1.93 6.13 -2.39 -0.01 1.91 16 47 H 0.09 0.85 8.14 -2.38 -0.02 0.83 16 48 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 49 H 0.11 0.61 5.94 -2.39 -0.01 0.60 16 Total: -1.00 -73.91 383.29 2.58 -71.32 By element: Atomic # 1 Polarization: 17.52 SS G_CDS: 0.96 Total: 18.48 kcal Atomic # 6 Polarization: 23.49 SS G_CDS: 6.83 Total: 30.32 kcal Atomic # 7 Polarization: -120.21 SS G_CDS: -5.66 Total: -125.87 kcal Atomic # 8 Polarization: -39.13 SS G_CDS: -1.58 Total: -40.72 kcal Atomic # 14 Polarization: 44.42 SS G_CDS: 2.03 Total: 46.45 kcal Total: -73.91 2.58 -71.32 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000972466834.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.823 kcal (2) G-P(sol) polarization free energy of solvation -73.906 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.083 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.584 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.322 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.500 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds