Wall clock time and date at job start Wed Apr 1 2020 04:49:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38227 * 120.41603 * 2 1 4 4 N 1.31854 * 120.75890 * 180.23417 * 3 2 1 5 5 C 1.31883 * 121.73037 * 359.47598 * 4 3 2 6 6 C 1.38185 * 120.76315 * 0.52815 * 5 4 3 7 7 C 1.50698 * 120.41919 * 179.72444 * 6 5 4 8 8 C 1.50702 * 109.46884 * 270.01725 * 7 6 5 9 9 O 1.21284 * 119.99808 * 0.02562 * 8 7 6 10 10 N 1.34775 * 119.99848 * 179.97438 * 8 7 6 11 11 C 1.47482 * 125.66508 * 359.69398 * 10 8 7 12 12 C 1.55238 * 104.79267 * 155.93765 * 11 10 8 13 13 C 1.54487 * 101.44373 * 36.64675 * 12 11 10 14 14 C 1.47180 * 125.65979 * 180.02562 * 10 8 7 15 15 C 1.52520 * 110.09862 * 206.80993 * 13 12 11 16 16 N 1.47311 * 108.39555 * 186.95696 * 15 13 12 17 17 C 1.36943 * 121.06467 * 229.41883 * 16 15 13 18 18 H 1.07998 * 120.00212 * 26.65942 * 17 16 15 19 19 C 1.38807 * 119.99916 * 206.65803 * 17 16 15 20 20 N 1.31620 * 120.00081 * 17.09374 * 19 17 16 21 21 Si 1.86801 * 120.00159 * 197.08850 * 19 17 16 22 22 H 1.48500 * 109.46868 * 94.15263 * 21 19 17 23 23 H 1.48492 * 109.47261 * 214.15314 * 21 19 17 24 24 H 1.48495 * 109.47075 * 334.15797 * 21 19 17 25 25 C 1.47160 * 117.86776 * 49.39519 * 16 15 13 26 26 C 1.53277 * 108.55374 * 308.86705 * 25 16 15 27 27 O 1.42060 * 110.38538 * 83.76752 * 13 12 11 28 28 C 1.38629 * 120.42070 * 179.97438 * 2 1 3 29 29 H 1.09000 * 109.46953 * 90.00310 * 1 2 3 30 30 H 1.08998 * 109.46851 * 209.99703 * 1 2 3 31 31 H 1.08994 * 109.47146 * 329.99872 * 1 2 3 32 32 H 1.07998 * 119.61964 * 359.95507 * 3 2 1 33 33 H 1.07995 * 119.62068 * 180.26929 * 5 4 3 34 34 H 1.08995 * 109.47212 * 30.01538 * 7 6 5 35 35 H 1.09000 * 109.47279 * 150.01753 * 7 6 5 36 36 H 1.09004 * 110.35135 * 274.88205 * 11 10 8 37 37 H 1.08998 * 110.35244 * 37.16988 * 11 10 8 38 38 H 1.09004 * 111.20389 * 278.55235 * 12 11 10 39 39 H 1.08999 * 110.94777 * 154.63030 * 12 11 10 40 40 H 1.09006 * 109.90846 * 300.84120 * 14 10 8 41 41 H 1.08994 * 109.91417 * 61.91600 * 14 10 8 42 42 H 1.09002 * 109.67977 * 306.67668 * 15 13 12 43 43 H 1.08999 * 109.68185 * 67.19460 * 15 13 12 44 44 H 0.96995 * 119.99962 * 180.02562 * 20 19 17 45 45 H 1.08999 * 109.62294 * 68.58862 * 25 16 15 46 46 H 1.09001 * 109.62486 * 189.15508 * 25 16 15 47 47 H 1.08992 * 109.51562 * 172.81671 * 26 25 16 48 48 H 1.08997 * 109.51378 * 292.92580 * 26 25 16 49 49 H 1.07993 * 120.78749 * 0.04123 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2069 1.1920 0.0000 4 7 3.5254 1.1999 -0.0046 5 6 4.2257 0.0824 0.0008 6 6 3.5949 -1.1470 0.0008 7 6 4.4028 -2.4192 0.0008 8 6 4.6725 -2.8429 -1.4200 9 8 4.2506 -2.1771 -2.3418 10 7 5.3834 -3.9611 -1.6663 11 6 5.9596 -4.8560 -0.6454 12 6 6.1038 -6.2281 -1.3570 13 6 6.5031 -5.7927 -2.7844 14 6 5.7194 -4.4882 -2.9988 15 6 6.0694 -6.8492 -3.7953 16 7 6.6126 -6.4812 -5.1143 17 6 5.8132 -6.4567 -6.2259 18 1 4.7527 -6.2791 -6.1246 19 6 6.3658 -6.6602 -7.4828 20 7 7.5604 -7.2009 -7.5968 21 14 5.4141 -6.1667 -9.0126 22 1 5.8177 -4.7989 -9.4268 23 1 5.7093 -7.1234 -10.1093 24 1 3.9589 -6.1854 -8.7177 25 6 8.0417 -6.1404 -5.1990 26 6 8.3562 -5.0877 -4.1301 27 8 7.9024 -5.5586 -2.8571 28 6 2.2090 -1.1954 0.0005 29 1 -0.3633 -0.0001 -1.0277 30 1 -0.3633 -0.8900 0.5138 31 1 -0.3633 0.8899 0.5138 32 1 1.6674 2.1277 -0.0007 33 1 5.3046 0.1287 0.0012 34 1 5.3487 -2.2488 0.5149 35 1 3.8461 -3.2031 0.5143 36 1 6.9344 -4.4880 -0.3253 37 1 5.2866 -4.9408 0.2078 38 1 5.1581 -6.7700 -1.3639 39 1 6.8906 -6.8253 -0.8961 40 1 4.8064 -4.6916 -3.5585 41 1 6.3330 -3.7675 -3.5392 42 1 6.4573 -7.8233 -3.4974 43 1 4.9812 -6.8864 -3.8433 44 1 7.9467 -7.3427 -8.4752 45 1 8.6420 -7.0327 -5.0217 46 1 8.2638 -5.7366 -6.1867 47 1 9.4320 -4.9169 -4.0927 48 1 7.8478 -4.1556 -4.3765 49 1 1.6889 -2.1419 0.0003 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000972485248.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:49:14 Heat of formation + Delta-G solvation = -35.224378 kcal Electronic energy + Delta-G solvation = -30711.750170 eV Core-core repulsion = 26638.687425 eV Total energy + Delta-G solvation = -4073.062745 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.76559 -41.18383 -39.94089 -37.56409 -36.25501 -34.63328 -34.49874 -33.53034 -32.80975 -30.39911 -29.99861 -28.86557 -28.17418 -27.13921 -25.02506 -24.67417 -24.09702 -22.69748 -22.47384 -20.53830 -20.09436 -18.86123 -18.30478 -17.94228 -17.85339 -17.62434 -17.00719 -16.45768 -16.39112 -16.12429 -15.70247 -15.45104 -15.23879 -15.12785 -14.96539 -14.73063 -14.52325 -14.18620 -13.98783 -13.94706 -13.60634 -13.44885 -13.32039 -13.24677 -13.13330 -13.00603 -12.94463 -12.65821 -12.50716 -12.34169 -12.29555 -12.18127 -12.12275 -11.83582 -11.17571 -11.12609 -10.83501 -10.57667 -10.49591 -10.41985 -9.74782 -9.70666 -8.75812 -7.94731 -5.41143 0.10844 0.32751 1.40618 1.43529 1.51410 1.58573 1.94083 2.42673 2.73332 2.82853 3.19650 3.36158 3.45323 3.53106 3.68462 3.72474 3.82833 3.90301 3.93514 4.05145 4.06597 4.24102 4.25363 4.32098 4.38545 4.43162 4.52667 4.57474 4.63533 4.66722 4.73073 4.75580 4.78976 4.81807 4.87525 4.90625 4.92113 5.07565 5.17025 5.18662 5.21481 5.24211 5.27382 5.32863 5.51181 5.57371 5.78829 6.25307 6.32087 6.52399 7.00687 7.03255 7.11689 7.71242 8.24573 9.10679 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.013308 B = 0.002688 C = 0.002415 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2103.456240 B =10415.923017 C =11592.035131 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.141 4.141 3 C 0.078 3.922 4 N -0.511 5.511 5 C 0.085 3.915 6 C -0.120 4.120 7 C -0.079 4.079 8 C 0.521 3.479 9 O -0.592 6.592 10 N -0.614 5.614 11 C 0.102 3.898 12 C -0.111 4.111 13 C 0.096 3.904 14 C 0.105 3.895 15 C 0.128 3.872 16 N -0.612 5.612 17 C -0.262 4.262 18 H 0.064 0.936 19 C -0.045 4.045 20 N -0.931 5.931 21 Si 0.962 3.038 22 H -0.289 1.289 23 H -0.290 1.290 24 H -0.270 1.270 25 C 0.146 3.854 26 C 0.048 3.952 27 O -0.369 6.369 28 C -0.076 4.076 29 H 0.073 0.927 30 H 0.081 0.919 31 H 0.086 0.914 32 H 0.173 0.827 33 H 0.159 0.841 34 H 0.135 0.865 35 H 0.141 0.859 36 H 0.085 0.915 37 H 0.123 0.877 38 H 0.106 0.894 39 H 0.112 0.888 40 H 0.049 0.951 41 H 0.042 0.958 42 H 0.032 0.968 43 H 0.065 0.935 44 H 0.252 0.748 45 H 0.009 0.991 46 H 0.063 0.937 47 H 0.111 0.889 48 H 0.036 0.964 49 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.550 8.171 23.540 26.344 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.142 4.142 3 C -0.079 4.079 4 N -0.219 5.219 5 C -0.072 4.072 6 C -0.122 4.122 7 C -0.119 4.119 8 C 0.311 3.689 9 O -0.473 6.473 10 N -0.348 5.348 11 C -0.019 4.019 12 C -0.149 4.149 13 C 0.054 3.946 14 C -0.018 4.018 15 C 0.002 3.998 16 N -0.337 5.337 17 C -0.391 4.391 18 H 0.082 0.918 19 C -0.241 4.241 20 N -0.577 5.577 21 Si 0.791 3.209 22 H -0.216 1.216 23 H -0.216 1.216 24 H -0.195 1.195 25 C 0.021 3.979 26 C -0.029 4.029 27 O -0.288 6.288 28 C -0.101 4.101 29 H 0.091 0.909 30 H 0.100 0.900 31 H 0.105 0.895 32 H 0.190 0.810 33 H 0.176 0.824 34 H 0.153 0.847 35 H 0.159 0.841 36 H 0.103 0.897 37 H 0.141 0.859 38 H 0.124 0.876 39 H 0.130 0.870 40 H 0.068 0.932 41 H 0.060 0.940 42 H 0.050 0.950 43 H 0.083 0.917 44 H 0.061 0.939 45 H 0.027 0.973 46 H 0.081 0.919 47 H 0.129 0.871 48 H 0.054 0.946 49 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -8.178 9.315 23.082 26.200 hybrid contribution -0.524 -0.603 -2.200 2.341 sum -8.702 8.712 20.882 24.242 Atomic orbital electron populations 1.20776 0.87987 1.04511 1.03118 1.21264 0.99235 0.93625 1.00119 1.23080 0.89684 0.98868 0.96224 1.67634 1.09556 1.31896 1.12787 1.22811 1.00758 0.87598 0.96025 1.20509 0.94915 0.95785 1.00997 1.20629 1.03482 0.95943 0.91831 1.21008 0.76706 0.78682 0.92476 1.90736 1.53362 1.54552 1.48605 1.48720 1.52878 1.25128 1.08061 1.22735 1.00320 0.87728 0.91144 1.22867 1.03979 0.97584 0.90429 1.22329 0.81665 0.92604 0.97996 1.22106 0.98588 0.95759 0.85371 1.21554 0.97950 0.95049 0.85234 1.44339 1.06399 1.79001 1.03931 1.19424 0.92008 1.42127 0.85590 0.91789 1.25710 0.98358 0.99435 1.00621 1.70156 1.18574 1.45896 1.23045 0.85328 0.78720 0.77277 0.79616 1.21577 1.21648 1.19477 1.21244 0.84355 0.94682 0.97649 1.23193 0.99832 0.95993 0.83924 1.87679 1.21824 1.86555 1.32747 1.21694 0.93365 0.99383 0.95693 0.90859 0.90010 0.89542 0.81023 0.82408 0.84689 0.84106 0.89658 0.85889 0.87575 0.86969 0.93216 0.94012 0.94986 0.91660 0.93883 0.97319 0.91884 0.87099 0.94593 0.83209 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.20 10.04 71.24 0.72 -0.49 16 2 C -0.14 -2.56 5.90 -19.77 -0.12 -2.67 16 3 C 0.08 1.62 10.86 84.69 0.92 2.54 16 4 N -0.51 -13.04 10.36 -195.85 -2.03 -15.07 16 5 C 0.08 1.99 10.86 84.67 0.92 2.91 16 6 C -0.12 -2.46 4.39 -19.77 -0.09 -2.55 16 7 C -0.08 -1.22 4.86 29.10 0.14 -1.08 16 8 C 0.52 14.08 7.84 87.66 0.69 14.77 16 9 O -0.59 -22.89 16.36 -3.04 -0.05 -22.94 16 10 N -0.61 -15.98 3.33 -811.84 -2.70 -18.68 16 11 C 0.10 1.64 6.70 86.96 0.58 2.22 16 12 C -0.11 -2.22 6.22 31.87 0.20 -2.03 16 13 C 0.10 3.10 0.81 -10.22 -0.01 3.09 16 14 C 0.11 3.69 5.95 86.48 0.51 4.21 16 15 C 0.13 5.10 5.30 86.07 0.46 5.56 16 16 N -0.61 -30.65 2.97 -698.64 -2.07 -32.72 16 17 C -0.26 -14.49 9.66 84.03 0.81 -13.68 16 18 H 0.06 3.51 7.89 -2.91 -0.02 3.49 16 19 C -0.05 -2.55 4.94 84.86 0.42 -2.13 16 20 N -0.93 -54.87 11.18 21.65 0.24 -54.63 16 21 Si 0.96 45.70 29.59 68.60 2.03 47.73 16 22 H -0.29 -13.71 7.11 99.48 0.71 -13.01 16 23 H -0.29 -13.67 7.11 99.48 0.71 -12.96 16 24 H -0.27 -12.34 7.11 99.48 0.71 -11.64 16 25 C 0.15 7.08 5.45 86.35 0.47 7.55 16 26 C 0.05 1.86 6.76 72.07 0.49 2.35 16 27 O -0.37 -12.96 10.26 -148.97 -1.53 -14.49 16 28 C -0.08 -1.44 9.55 22.47 0.21 -1.22 16 29 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 30 H 0.08 0.71 8.09 -2.39 -0.02 0.69 16 31 H 0.09 0.68 8.09 -2.39 -0.02 0.66 16 32 H 0.17 2.59 8.06 -2.91 -0.02 2.57 16 33 H 0.16 3.20 8.06 -2.91 -0.02 3.18 16 34 H 0.14 1.33 8.09 -2.39 -0.02 1.31 16 35 H 0.14 1.16 7.81 -2.39 -0.02 1.14 16 36 H 0.09 1.27 8.14 -2.39 -0.02 1.25 16 37 H 0.12 0.90 7.48 -2.39 -0.02 0.88 16 38 H 0.11 1.82 8.01 -2.38 -0.02 1.80 16 39 H 0.11 1.93 8.14 -2.39 -0.02 1.91 16 40 H 0.05 2.00 7.61 -2.38 -0.02 1.98 16 41 H 0.04 1.72 6.02 -2.39 -0.01 1.70 16 42 H 0.03 1.28 8.14 -2.39 -0.02 1.26 16 43 H 0.06 2.53 7.70 -2.39 -0.02 2.52 16 44 H 0.25 14.37 8.31 -92.71 -0.77 13.60 16 45 H 0.01 0.45 8.14 -2.39 -0.02 0.43 16 46 H 0.06 3.43 6.15 -2.39 -0.01 3.41 16 47 H 0.11 3.65 8.14 -2.39 -0.02 3.63 16 48 H 0.04 1.46 6.23 -2.39 -0.01 1.45 16 49 H 0.15 2.17 8.06 -2.91 -0.02 2.14 16 Total: -1.00 -79.38 391.96 2.16 -77.22 By element: Atomic # 1 Polarization: 13.30 SS G_CDS: 0.95 Total: 14.24 kcal Atomic # 6 Polarization: 12.02 SS G_CDS: 7.33 Total: 19.35 kcal Atomic # 7 Polarization: -114.54 SS G_CDS: -6.56 Total: -121.10 kcal Atomic # 8 Polarization: -35.85 SS G_CDS: -1.58 Total: -37.43 kcal Atomic # 14 Polarization: 45.70 SS G_CDS: 2.03 Total: 47.73 kcal Total: -79.38 2.16 -77.22 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000972485248.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.994 kcal (2) G-P(sol) polarization free energy of solvation -79.378 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.384 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.160 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.218 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.224 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds