Wall clock time and date at job start Wed Apr 1 2020 04:26:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38357 * 119.40484 * 2 1 4 4 C 1.38339 * 119.45815 * 179.97438 * 3 2 1 5 5 C 1.39985 * 118.34871 * 359.97438 * 4 3 2 6 6 C 1.47526 * 120.59587 * 179.97438 * 5 4 3 7 7 O 1.21587 * 120.00212 * 180.02562 * 6 5 4 8 8 N 1.34778 * 120.00221 * 0.02562 * 6 5 4 9 9 C 1.46493 * 120.00331 * 179.97438 * 8 6 5 10 10 H 1.09002 * 109.73441 * 35.00383 * 9 8 6 11 11 C 1.53330 * 109.73950 * 274.34341 * 9 8 6 12 12 C 1.52588 * 108.40604 * 176.21642 * 11 9 8 13 13 C 1.53006 * 111.05681 * 62.35016 * 12 11 9 14 14 H 1.09004 * 112.07149 * 74.01266 * 13 12 11 15 15 C 1.55344 * 106.42338 * 197.21124 * 13 12 11 16 16 N 1.47172 * 106.96229 * 91.62177 * 15 13 12 17 17 C 1.36935 * 125.64810 * 180.93474 * 16 15 13 18 18 H 1.07998 * 119.99963 * 180.02562 * 17 16 15 19 19 C 1.38814 * 120.00240 * 0.02989 * 17 16 15 20 20 N 1.31615 * 119.99711 * 359.97438 * 19 17 16 21 21 Si 1.86797 * 120.00141 * 180.02562 * 19 17 16 22 22 H 1.48497 * 109.47448 * 59.99506 * 21 19 17 23 23 H 1.48507 * 109.46987 * 179.97438 * 21 19 17 24 24 H 1.48498 * 109.47130 * 299.99349 * 21 19 17 25 25 C 1.47813 * 108.70268 * 0.95470 * 16 15 13 26 26 C 1.53906 * 104.06226 * 23.35613 * 25 16 15 27 27 H 1.08992 * 109.21149 * 77.29576 * 26 25 16 28 28 C 1.50737 * 112.98046 * 198.50632 * 26 25 16 29 29 C 1.40278 * 118.80587 * 0.02562 * 5 4 3 30 30 O 1.35427 * 119.79697 * 180.02562 * 29 5 4 31 31 N 1.31873 * 119.41005 * 179.97438 * 2 1 3 32 32 H 1.09003 * 109.47087 * 270.02196 * 1 2 3 33 33 H 1.08997 * 109.47570 * 30.01994 * 1 2 3 34 34 H 1.08999 * 109.47157 * 150.02114 * 1 2 3 35 35 H 1.08003 * 120.27450 * 0.02562 * 3 2 1 36 36 H 1.08007 * 120.82426 * 180.25245 * 4 3 2 37 37 H 0.97009 * 119.99461 * 0.02562 * 8 6 5 38 38 H 1.09000 * 109.67569 * 295.94247 * 11 9 8 39 39 H 1.08996 * 109.67783 * 56.48707 * 11 9 8 40 40 H 1.09001 * 109.16404 * 182.76064 * 12 11 9 41 41 H 1.09005 * 109.16430 * 301.94754 * 12 11 9 42 42 H 1.08998 * 109.96531 * 210.99842 * 15 13 12 43 43 H 1.09002 * 109.96280 * 332.24742 * 15 13 12 44 44 H 0.97005 * 120.00438 * 180.02562 * 20 19 17 45 45 H 1.09006 * 110.50764 * 141.99199 * 25 16 15 46 46 H 1.08998 * 110.51378 * 264.56697 * 25 16 15 47 47 H 1.09007 * 109.06456 * 304.59212 * 28 26 25 48 48 H 1.08990 * 108.98836 * 185.75995 * 28 26 25 49 49 H 0.96703 * 114.00193 * 89.99592 * 30 29 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1863 1.2053 0.0000 4 6 3.5697 1.2066 0.0005 5 6 4.2355 -0.0247 0.0016 6 6 5.7097 -0.0812 0.0017 7 8 6.2769 -1.1567 0.0021 8 7 6.4278 1.0593 0.0012 9 6 7.8917 1.0033 0.0018 10 1 8.2276 0.1490 -0.5861 11 6 8.4044 0.8752 1.4411 12 6 9.9223 0.7243 1.4003 13 6 10.5817 1.9632 0.7907 14 1 10.5713 2.8114 1.4753 15 6 12.0231 1.5426 0.3925 16 7 11.9658 1.0829 -1.0044 17 6 13.0239 0.6078 -1.7322 18 1 12.8781 0.2940 -2.7553 19 6 14.2839 0.5292 -1.1551 20 7 14.4617 0.9119 0.0916 21 14 15.7274 -0.1183 -2.1482 22 1 15.9324 0.7412 -3.3417 23 1 16.9529 -0.1005 -1.3096 24 1 15.4447 -1.5098 -2.5829 25 6 10.5770 1.2195 -1.4917 26 6 9.9652 2.2982 -0.5801 27 1 10.3152 3.2793 -0.9007 28 6 8.4579 2.2928 -0.5918 29 6 3.4758 -1.2040 0.0016 30 8 4.0993 -2.4062 0.0031 31 7 2.1546 -1.1488 0.0005 32 1 -0.3633 0.0004 1.0277 33 1 -0.3634 0.8898 -0.5141 34 1 -0.3633 -0.8902 -0.5135 35 1 1.6411 2.1376 0.0004 36 1 4.1223 2.1346 0.0046 37 1 5.9753 1.9174 0.0012 38 1 8.1395 1.7690 2.0060 39 1 7.9610 -0.0021 1.9120 40 1 10.2953 0.5830 2.4147 41 1 10.1791 -0.1491 0.8007 42 1 12.6963 2.3957 0.4762 43 1 12.3659 0.7330 1.0369 44 1 15.3422 0.8574 0.4949 45 1 10.5676 1.5478 -2.5311 46 1 10.0403 0.2769 -1.3850 47 1 8.1094 2.3938 -1.6197 48 1 8.0957 3.1405 -0.0104 49 1 4.2794 -2.7547 0.8870 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000980180131.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:26:23 Heat of formation + Delta-G solvation = -20.791504 kcal Electronic energy + Delta-G solvation = -30397.570309 eV Core-core repulsion = 26325.133421 eV Total energy + Delta-G solvation = -4072.436889 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.21361 -39.91314 -38.66134 -37.47014 -35.51451 -33.94853 -33.02381 -32.00640 -31.58686 -30.77305 -29.06128 -28.15850 -26.03262 -24.90699 -23.70336 -23.43102 -22.17567 -21.74125 -20.70558 -19.87784 -19.01506 -18.56879 -17.61994 -17.32614 -16.69867 -16.13289 -15.98066 -15.32420 -14.95353 -14.78207 -14.69871 -14.26918 -14.14598 -13.84109 -13.65529 -13.52275 -13.47059 -13.06554 -12.69860 -12.55442 -12.45402 -12.37766 -12.05354 -11.88083 -11.66931 -11.57647 -11.10063 -10.99649 -10.93800 -10.64544 -10.53487 -10.36642 -10.32063 -9.98887 -9.87187 -9.76274 -9.60746 -9.50868 -9.40433 -9.23916 -8.93828 -8.53926 -6.75578 -5.65353 -2.97969 0.19982 0.67600 2.62067 2.92780 3.17718 3.43951 3.44530 3.48622 3.49786 4.08298 4.16721 4.35667 4.52410 4.55086 4.80318 4.91782 4.93462 4.95158 5.07369 5.10816 5.28782 5.41241 5.42304 5.46474 5.49578 5.55225 5.56739 5.60805 5.73496 5.81249 5.84228 5.95661 5.99800 6.07524 6.17871 6.25898 6.36882 6.45251 6.49415 6.57506 6.67051 6.83219 6.95516 7.05314 7.21166 7.38562 7.49804 7.61896 7.67841 7.88443 8.12049 8.31503 9.28257 9.88410 10.55450 11.46256 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.024860 B = 0.002142 C = 0.002079 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1126.032717 B =13070.064763 C =13465.393015 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C 0.174 3.826 3 C -0.193 4.193 4 C -0.026 4.026 5 C -0.209 4.209 6 C 0.560 3.440 7 O -0.513 6.513 8 N -0.721 5.721 9 C 0.145 3.855 10 H 0.097 0.903 11 C -0.123 4.123 12 C -0.104 4.104 13 C -0.113 4.113 14 H 0.073 0.927 15 C 0.183 3.817 16 N -0.606 5.606 17 C -0.225 4.225 18 H 0.076 0.924 19 C -0.010 4.010 20 N -0.923 5.923 21 Si 0.911 3.089 22 H -0.286 1.286 23 H -0.291 1.291 24 H -0.285 1.285 25 C 0.139 3.861 26 C -0.092 4.092 27 H 0.071 0.929 28 C -0.107 4.107 29 C 0.377 3.623 30 O -0.459 6.459 31 N -0.510 5.510 32 H 0.084 0.916 33 H 0.081 0.919 34 H 0.081 0.919 35 H 0.145 0.855 36 H 0.143 0.857 37 H 0.393 0.607 38 H 0.058 0.942 39 H 0.060 0.940 40 H 0.059 0.941 41 H 0.070 0.930 42 H 0.038 0.962 43 H 0.048 0.952 44 H 0.252 0.748 45 H 0.035 0.965 46 H 0.021 0.979 47 H 0.064 0.936 48 H 0.061 0.939 49 H 0.407 0.593 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.192 5.086 4.180 28.951 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.035 3.965 3 C -0.213 4.213 4 C -0.052 4.052 5 C -0.216 4.216 6 C 0.345 3.655 7 O -0.389 6.389 8 N -0.372 5.372 9 C 0.041 3.959 10 H 0.115 0.885 11 C -0.161 4.161 12 C -0.142 4.142 13 C -0.132 4.132 14 H 0.091 0.909 15 C 0.059 3.941 16 N -0.332 5.332 17 C -0.354 4.354 18 H 0.094 0.906 19 C -0.206 4.206 20 N -0.571 5.571 21 Si 0.742 3.258 22 H -0.213 1.213 23 H -0.217 1.217 24 H -0.212 1.212 25 C 0.013 3.987 26 C -0.112 4.112 27 H 0.090 0.910 28 C -0.146 4.146 29 C 0.196 3.804 30 O -0.266 6.266 31 N -0.230 5.230 32 H 0.103 0.897 33 H 0.099 0.901 34 H 0.100 0.900 35 H 0.163 0.837 36 H 0.161 0.839 37 H 0.228 0.772 38 H 0.077 0.923 39 H 0.078 0.922 40 H 0.077 0.923 41 H 0.089 0.911 42 H 0.056 0.944 43 H 0.067 0.933 44 H 0.062 0.938 45 H 0.054 0.946 46 H 0.039 0.961 47 H 0.082 0.918 48 H 0.080 0.920 49 H 0.267 0.733 Dipole moment (debyes) X Y Z Total from point charges -27.927 3.477 3.609 28.373 hybrid contribution 1.166 0.830 -0.026 1.431 sum -26.761 4.307 3.583 27.341 Atomic orbital electron populations 1.20840 0.88110 1.04090 1.03631 1.21296 0.97131 0.87235 0.90801 1.21903 0.94485 0.99627 1.05249 1.21733 0.94572 0.97037 0.91827 1.21199 0.95220 0.94411 1.10794 1.17788 0.85742 0.84660 0.77283 1.90855 1.71550 1.28312 1.48161 1.46027 1.07764 1.07983 1.75405 1.21151 0.77014 1.00097 0.97613 0.88519 1.21889 0.97259 1.01292 0.95679 1.21463 0.92588 0.99214 1.00974 1.22460 0.99036 0.96697 0.95013 0.90902 1.21461 0.88884 0.98287 0.85487 1.44550 1.02941 1.75509 1.10222 1.19020 0.86402 1.35012 0.94924 0.90608 1.24784 0.97505 1.01794 0.96523 1.69946 1.21880 1.53251 1.12047 0.86209 0.82042 0.78743 0.78836 1.21276 1.21663 1.21210 1.21494 0.86947 0.94820 0.95461 1.21344 0.92033 1.00431 0.97343 0.91041 1.21154 0.96609 0.96107 1.00689 1.19166 0.86010 0.85273 0.89921 1.84731 1.76289 1.31776 1.33829 1.67157 1.09417 1.30449 1.16013 0.89736 0.90068 0.89991 0.83723 0.83900 0.77217 0.92312 0.92162 0.92269 0.91125 0.94389 0.93342 0.93807 0.94643 0.96114 0.91775 0.91991 0.73337 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.49 10.16 36.01 0.37 -0.13 16 2 C 0.17 1.36 6.78 -82.53 -0.56 0.80 16 3 C -0.19 -1.18 9.71 -39.50 -0.38 -1.56 16 4 C -0.03 -0.18 9.64 -38.89 -0.37 -0.56 16 5 C -0.21 -2.24 5.90 -104.69 -0.62 -2.86 16 6 C 0.56 7.27 7.75 -12.47 -0.10 7.17 16 7 O -0.51 -8.71 14.86 -16.48 -0.24 -8.95 16 8 N -0.72 -7.80 5.05 -54.77 -0.28 -8.08 16 9 C 0.14 1.94 2.29 -67.85 -0.16 1.79 16 10 H 0.10 1.62 6.26 -51.93 -0.32 1.30 16 11 C -0.12 -1.69 5.53 -26.77 -0.15 -1.84 16 12 C -0.10 -1.75 4.63 -26.94 -0.12 -1.88 16 13 C -0.11 -2.03 3.61 -88.85 -0.32 -2.35 16 14 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 15 C 0.18 4.42 4.66 -2.43 -0.01 4.41 16 16 N -0.61 -15.58 3.41 -169.62 -0.58 -16.16 16 17 C -0.23 -6.39 10.28 -15.06 -0.15 -6.55 16 18 H 0.08 2.09 7.83 -52.49 -0.41 1.68 16 19 C -0.01 -0.29 5.49 -17.43 -0.10 -0.39 16 20 N -0.92 -27.45 10.32 55.49 0.57 -26.88 16 21 Si 0.91 22.57 29.55 -169.99 -5.02 17.55 16 22 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 23 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 24 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 25 C 0.14 2.88 6.18 -2.85 -0.02 2.86 16 26 C -0.09 -1.53 2.81 -90.76 -0.26 -1.79 16 27 H 0.07 1.22 8.14 -51.93 -0.42 0.79 16 28 C -0.11 -1.35 4.85 -27.95 -0.14 -1.48 16 29 C 0.38 4.48 7.77 -16.61 -0.13 4.35 16 30 O -0.46 -5.77 11.66 -39.74 -0.46 -6.23 16 31 N -0.51 -5.59 10.28 -9.21 -0.09 -5.69 16 32 H 0.08 0.29 8.14 -51.93 -0.42 -0.14 16 33 H 0.08 0.19 8.07 -51.93 -0.42 -0.23 16 34 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 35 H 0.14 0.41 8.06 -52.48 -0.42 -0.01 16 36 H 0.14 0.58 6.52 -52.48 -0.34 0.24 16 37 H 0.39 2.91 6.71 -40.82 -0.27 2.63 16 38 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 39 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 40 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 41 H 0.07 1.40 7.16 -51.93 -0.37 1.02 16 42 H 0.04 1.02 7.51 -51.93 -0.39 0.63 16 43 H 0.05 1.30 6.99 -51.93 -0.36 0.94 16 44 H 0.25 7.29 8.31 -40.82 -0.34 6.96 16 45 H 0.04 0.73 8.14 -51.93 -0.42 0.30 16 46 H 0.02 0.45 6.17 -51.93 -0.32 0.13 16 47 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 48 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 49 H 0.41 3.44 9.06 45.56 0.41 3.85 16 LS Contribution 384.54 15.07 5.79 5.79 Total: -1.00 -35.83 384.54 -10.12 -45.94 By element: Atomic # 1 Polarization: 9.28 SS G_CDS: -6.59 Total: 2.69 kcal Atomic # 6 Polarization: 3.22 SS G_CDS: -3.22 Total: 0.01 kcal Atomic # 7 Polarization: -56.42 SS G_CDS: -0.38 Total: -56.80 kcal Atomic # 8 Polarization: -14.48 SS G_CDS: -0.71 Total: -15.18 kcal Atomic # 14 Polarization: 22.57 SS G_CDS: -5.02 Total: 17.55 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -35.83 -10.12 -45.94 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000980180131.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.150 kcal (2) G-P(sol) polarization free energy of solvation -35.825 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.675 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.117 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.942 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.792 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds